MD07G1248000.v1.1

Zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
31714870 .. 31715733
864 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1248000.v1.1.491

Sequence Viewer

Length: 864 bp
ATGATGCAAGGTGTGCATCCGGGTTACTATTACCAGTTGGTTGACCTGAGCGTGTACTATTCGGGTCTTCTCAGGAGTCCGGTCCAGTACCAGTGCCAGTACCACGACCCGATGATCGACAATGCCATCTTTGGGTCGGACGAATTCCGGATGTACGCTTACAAGGTGAAGCGTTGCCAACGCATGGGAGCCCACGACTGGACGGAGTGCCCGTACGCTCACCGCGGCGAGAAGGCCCAGCGCCGTGACCCCCGCAAATTCGCCTACGCGGCGATTATTTGCCCGGCATTTCGCAGCACCGGTTACTGCCGCAAGGGAGACCGTTGCGAATGTGCTCACGGAGTGTTCGAGTATTGGCTCCACCCGGCCAAGTACCGCACCCGTGCATGCGCTAGTCTCGAGAATGGGTACTGCCCGCGCAAAGTGTGCTTCTTCGCTCATACGCCCGACGAGCTCCGCCCGCAACACACGTATTCCGGCCACAAGTACTATGTTGCTTATGATCAGCAAGCAGGTTTTTATCCTCCCTACCACTACTACCAGTACCAGAACAACAGCGACCTGTACCGTGCGGCCCCAAGGACCCCGAAGGCCAACCGTGGAGGAGGAGGCGTGGCAACGGAAGCACCGTGGACGGCTGCGAAGTATCAGACTATGATGACCAACAAGAAGATCGTCGACGAGTCTTGCTTGAAGGTGGAGGAATTCCTGAACAGTCTGAGGGCGTTGAAGCTGAGTGACTATGAGATGGAGTATGACCAAGGTGAAATCGATGCTGCTTGTGGGATGAAGAGTTATGGTGGTGGGGAGGCGTCGGTGTCGGAGATGCCTCAGTTTGACTGGATTAACAAGCTGCTGCAGTAA

Protein Analysis

288

Amino Acids

33.24

Weight (kDa)

8.34

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH_AtC3H23 PF25512 48 - 81 5.9e-18 AtC3H23-like, CCCH zinc finger
zf-CCCH PF00642 93 - 114 8e-06 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016042)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07500
fragaria_vesca FvH4_7g26870
malus_domestica MD07G1248000.v1.1
prunus_persica Prupe.2G272000_v2.0.a1
pyrus_communis pycom07g22170
rosa_chinensis RchiOBHm_Chr1g0373551
rosa_laevigata RLG00000026816
rosa_multiflora Rmu_sc0002860.1_g000004
rosa_roxburghii Rroxscaffold_4G00284150
rosa_rugosa Rorug01G0378100
rosa_samantha Rh1AG387600 Rh1BG351900 Rh1CG364600 Rh1DG382300
rosa_wichuraiana Rw1G034780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 503
AccB7I CCANNNNNTGG 1 cut(s) 184
AccI GTMKAC 1 cut(s) 678
AccII CGCG 3 cut(s) 225, 269, 418
AccIII TCCGGA 1 cut(s) 147
AcoI YGGCCR 2 cut(s) 366, 478
AcsI RAATTY 3 cut(s) 143, 257, 704
AcyI GRCGYC 1 cut(s) 812
AdeI CACNNNGTG 1 cut(s) 343
AfiI CCNNNNNNNGG 3 cut(s) 132, 184, 198
AflIII ACRYGT 1 cut(s) 468
AgeI ACCGGT 1 cut(s) 299
AgsI TTSAA 2 cut(s) 694, 730
AluBI AGCT 3 cut(s) 454, 733, 853
AluI AGCT 3 cut(s) 454, 733, 853
Alw21I GWGCWC 2 cut(s) 337, 456
Alw26I GTCTC 2 cut(s) 312, 401
Ama87I CYCGRG 1 cut(s) 398
Aor13HI TCCGGA 1 cut(s) 147
AoxI GGCC 5 cut(s) 234, 366, 478, 573, 591
ApeKI GCWGC 5 cut(s) 294, 638, 776, 853, 856
ApoI RAATTY 3 cut(s) 143, 257, 704
AsiGI ACCGGT 1 cut(s) 299
AspLEI GCGC 3 cut(s) 243, 392, 420
AspS9I GGNCC 4 cut(s) 82, 235, 574, 582
AsuC2I CCSGG 3 cut(s) 21, 284, 365
AsuHPI GGTGA 3 cut(s) 178, 212, 776
AvaI CYCGRG 1 cut(s) 398
AvaII GGWCC 2 cut(s) 82, 582
BaeGI GKGCMC 1 cut(s) 212
BanII GRGCYC 2 cut(s) 193, 456
BbsI GAAGAC 1 cut(s) 59
Bbv12I GWGCWC 2 cut(s) 337, 456
BbvI GCAGC 5 cut(s) 306, 625, 763, 840, 843
BccI CCATC 2 cut(s) 134, 742
BceAI ACGGC 2 cut(s) 228, 651
BclI TGATCA 1 cut(s) 502
BcnI CCSGG 3 cut(s) 21, 284, 365
BcoDI GTCTC 2 cut(s) 312, 401
BfaI CTAG 1 cut(s) 393
BfmI CTRYAG 1 cut(s) 857
BfoI RGCGCY 1 cut(s) 244
BfuAI ACCTGC 1 cut(s) 503
BglI GCCNNNNNGGC 1 cut(s) 269
BisI GCNGC 9 cut(s) 226, 270, 295, 310, 573, 639, 777, 854, 857
BlsI GCNGC 9 cut(s) 227, 271, 296, 311, 574, 640, 778, 855, 858
BmcAI AGTACT 1 cut(s) 488
Bme1390I CCNGG 3 cut(s) 21, 284, 365
Bme18I GGWCC 2 cut(s) 82, 582
BmeT110I CYCGRG 1 cut(s) 398
BmgT120I GGNCC 4 cut(s) 82, 235, 574, 582
BmiI GGNNCC 4 cut(s) 190, 359, 576, 584
BmrFI CCNGG 3 cut(s) 21, 284, 365
BmsI GCATC 3 cut(s) 25, 763, 816
BpiI GAAGAC 1 cut(s) 59
Bpu10I CCTNAGC 1 cut(s) 47
BpuMI CCSGG 3 cut(s) 21, 284, 365
Bsa29I ATCGAT 1 cut(s) 771
BsaAI YACGTR 1 cut(s) 471
BsaHI GRCGYC 1 cut(s) 812
BsaI GGTCTC 1 cut(s) 312
BsaJI CCNNGG 5 cut(s) 223, 578, 598, 629, 760
BsaWI WCCGGW 3 cut(s) 79, 147, 299
BsaXI ACNNNNNCTCC 4 cut(s) 197, 227, 597, 627
Bsc4I CCNNNNNNNGG 3 cut(s) 132, 184, 198
Bse118I RCCGGY 1 cut(s) 299
Bse1I ACTGG 7 cut(s) 34, 85, 91, 97, 203, 541, 845
BseAI TCCGGA 1 cut(s) 147
BseCI ATCGAT 1 cut(s) 771
BseDI CCNNGG 5 cut(s) 223, 578, 598, 629, 760
BseGI GGATG 3 cut(s) 16, 156, 792
BseLI CCNNNNNNNGG 3 cut(s) 132, 184, 198
BseMII CTCAG 5 cut(s) 38, 85, 710, 725, 845
BseNI ACTGG 7 cut(s) 34, 85, 91, 97, 203, 541, 845
BseRI GAGGAG 2 cut(s) 618, 621
BseSI GKGCMC 1 cut(s) 212
BseXI GCAGC 5 cut(s) 306, 625, 763, 840, 843
BseYI CCCAGC 1 cut(s) 237
Bsh1236I CGCG 3 cut(s) 225, 269, 418
BshFI GGCC 5 cut(s) 236, 368, 480, 575, 593
BshTI ACCGGT 1 cut(s) 299
BshVI ATCGAT 1 cut(s) 771
BsiHKAI GWGCWC 2 cut(s) 337, 456
BsiHKCI CYCGRG 1 cut(s) 398
BsiSI CCGG 7 cut(s) 20, 80, 148, 284, 300, 365, 477
BsiWI CGTACG 1 cut(s) 213
BslI CCNNNNNNNGG 3 cut(s) 132, 184, 198
BsmAI GTCTC 2 cut(s) 312, 401
BsnI GGCC 5 cut(s) 236, 368, 480, 575, 593
Bso31I GGTCTC 1 cut(s) 312
BsoBI CYCGRG 1 cut(s) 398
Bsp1286I GDGCHC 4 cut(s) 193, 212, 337, 456
Bsp13I TCCGGA 1 cut(s) 147
Bsp143I GATC 3 cut(s) 114, 502, 672
BspANI GGCC 5 cut(s) 236, 368, 480, 575, 593
BspCNI CTCAG 5 cut(s) 39, 84, 711, 726, 844
BspDI ATCGAT 1 cut(s) 771
BspEI TCCGGA 1 cut(s) 147
BspFNI CGCG 3 cut(s) 225, 269, 418
BspLI GGNNCC 4 cut(s) 190, 359, 576, 584
BspMAI CTGCAG 1 cut(s) 861
BspMI ACCTGC 1 cut(s) 503
BspTNI GGTCTC 1 cut(s) 312
BsrFI RCCGGY 1 cut(s) 299
BsrI ACTGG 7 cut(s) 34, 85, 91, 97, 203, 541, 845
BssAI RCCGGY 1 cut(s) 299
BssECI CCNNGG 5 cut(s) 223, 578, 598, 629, 760
BssMI GATC 3 cut(s) 114, 502, 672
BssNI GRCGYC 1 cut(s) 812
BssT1I CCWWGG 2 cut(s) 578, 760
Bst4CI ACNGT 5 cut(s) 323, 569, 599, 630, 716
Bst6I CTCTTC 1 cut(s) 785
BstACI GRCGYC 1 cut(s) 812
BstAPI GCANNNNNTGC 2 cut(s) 13, 426
BstBAI YACGTR 1 cut(s) 471
BstC8I GCNNGC 4 cut(s) 388, 416, 461, 510
BstDEI CTNAG 5 cut(s) 47, 71, 719, 734, 831
BstDSI CCRYGG 3 cut(s) 223, 598, 629
BstF5I GGATG 3 cut(s) 16, 156, 792
BstFNI CGCG 3 cut(s) 225, 269, 418
BstH2I RGCGCY 1 cut(s) 244
BstHHI GCGC 3 cut(s) 243, 392, 420
BstKTI GATC 3 cut(s) 117, 505, 675
BstMAI GTCTC 2 cut(s) 312, 401
BstMBI GATC 3 cut(s) 114, 502, 672
BstMWI GCNNNNNNNGC 6 cut(s) 13, 269, 426, 451, 460, 623
BstNSI RCATGY 1 cut(s) 390
BstSCI CCNGG 3 cut(s) 19, 282, 363
BstSFI CTRYAG 1 cut(s) 857
BstSLI GKGCMC 1 cut(s) 212
BstUI CGCG 3 cut(s) 225, 269, 418
BstV1I GCAGC 5 cut(s) 306, 625, 763, 840, 843
BstV2I GAAGAC 1 cut(s) 59
Bsu15I ATCGAT 1 cut(s) 771
BsuRI GGCC 5 cut(s) 236, 368, 480, 575, 593
BsuTUI ATCGAT 1 cut(s) 771
BtgI CCRYGG 3 cut(s) 223, 598, 629
BtsCI GGATG 3 cut(s) 16, 156, 792
BtsIMutI CAGTG 1 cut(s) 98
BveI ACCTGC 1 cut(s) 503
Cac8I GCNNGC 4 cut(s) 388, 416, 461, 510
CfoI GCGC 3 cut(s) 243, 392, 420
Cfr10I RCCGGY 1 cut(s) 299
Cfr13I GGNCC 4 cut(s) 82, 235, 574, 582
Cfr42I CCGCGG 1 cut(s) 226
ClaI ATCGAT 1 cut(s) 771
CseI GACGC 1 cut(s) 801
CspAI ACCGGT 1 cut(s) 299
CviAII CATG 2 cut(s) 184, 387
DdeI CTNAG 5 cut(s) 47, 71, 719, 734, 831
DpnI GATC 3 cut(s) 116, 504, 674
DpnII GATC 3 cut(s) 114, 502, 672
DraIII CACNNNGTG 1 cut(s) 343
EaeI YGGCCR 2 cut(s) 366, 478
Eam1104I CTCTTC 1 cut(s) 785
EarI CTCTTC 1 cut(s) 785
EciI GGCGGA 1 cut(s) 446
Ecl136II GAGCTC 1 cut(s) 454
Eco130I CCWWGG 2 cut(s) 578, 760
Eco24I GRGCYC 2 cut(s) 193, 456
Eco31I GGTCTC 1 cut(s) 312
Eco47I GGWCC 2 cut(s) 82, 582
Eco53kI GAGCTC 1 cut(s) 454
Eco88I CYCGRG 1 cut(s) 398
EcoICRI GAGCTC 1 cut(s) 454
EcoO109I RGGNCCY 1 cut(s) 582
EcoRI GAATTC 2 cut(s) 143, 704
EcoT14I CCWWGG 2 cut(s) 578, 760
EcoT38I GRGCYC 2 cut(s) 193, 456
ErhI CCWWGG 2 cut(s) 578, 760
FaeI CATG 2 cut(s) 187, 390
FaiI YATR 9 cut(s) 185, 388, 441, 492, 501, 656, 744, 756, 798
FatI CATG 2 cut(s) 183, 386
FauI CCCGC 3 cut(s) 260, 423, 468
FbaI TGATCA 1 cut(s) 502
FblI GTMKAC 1 cut(s) 678
Fnu4HI GCNGC 9 cut(s) 226, 270, 295, 310, 573, 639, 777, 854, 857
FokI GGATG 3 cut(s) 3, 163, 799
FriOI GRGCYC 2 cut(s) 193, 456
Fsp4HI GCNGC 9 cut(s) 226, 270, 295, 310, 573, 639, 777, 854, 857
FspBI CTAG 1 cut(s) 393
GlaI GCGC 3 cut(s) 242, 391, 419
GluI GCNGC 9 cut(s) 226, 270, 295, 310, 573, 639, 777, 854, 857
GsaI CCCAGC 1 cut(s) 241
HaeII RGCGCY 1 cut(s) 244
HaeIII GGCC 5 cut(s) 236, 368, 480, 575, 593
HapII CCGG 7 cut(s) 20, 80, 148, 284, 300, 365, 477
HgaI GACGC 1 cut(s) 801
HhaI GCGC 3 cut(s) 243, 392, 420
Hin1I GRCGYC 1 cut(s) 812
Hin1II CATG 2 cut(s) 187, 390
Hin6I GCGC 3 cut(s) 241, 390, 418
HinP1I GCGC 3 cut(s) 241, 390, 418
HincII GTYRAC 2 cut(s) 43, 679
HindII GTYRAC 2 cut(s) 43, 679
HinfI GANTC 2 cut(s) 76, 683
HpaII CCGG 7 cut(s) 20, 80, 148, 284, 300, 365, 477
HphI GGTGA 3 cut(s) 178, 212, 776
Hpy166II GTNNAC 4 cut(s) 43, 55, 633, 679
Hpy188I TCNGA 4 cut(s) 139, 651, 720, 823
Hpy188III TCNNGA 5 cut(s) 73, 148, 398, 400, 709
Hpy8I GTNNAC 4 cut(s) 43, 55, 633, 679
Hpy99I CGWCG 4 cut(s) 452, 680, 683, 817
HpyAV CCTTC 3 cut(s) 226, 583, 688
HpyCH4III ACNGT 5 cut(s) 323, 569, 599, 630, 716
HpyCH4IV ACGT 1 cut(s) 470
HpyCH4V TGCA 4 cut(s) 7, 16, 386, 859
HpyF10VI GCNNNNNNNGC 6 cut(s) 13, 269, 426, 451, 460, 623
HpyF3I CTNAG 5 cut(s) 47, 71, 719, 734, 831
HpySE526I ACGT 1 cut(s) 470
Hsp92I GRCGYC 1 cut(s) 812
Hsp92II CATG 2 cut(s) 187, 390
HspAI GCGC 3 cut(s) 241, 390, 418
Kpn2I TCCGGA 1 cut(s) 147
Ksp22I TGATCA 1 cut(s) 502
KspI CCGCGG 1 cut(s) 226
Kzo9I GATC 3 cut(s) 114, 502, 672
LmnI GCTCC 3 cut(s) 188, 363, 459
Lsp1109I GCAGC 5 cut(s) 306, 625, 763, 840, 843
LweI GCATC 3 cut(s) 25, 763, 816
MaeI CTAG 1 cut(s) 393
MaeII ACGT 1 cut(s) 470
MaeIII GTNAC 4 cut(s) 23, 245, 302, 737
MalI GATC 3 cut(s) 116, 504, 674
MboI GATC 3 cut(s) 114, 502, 672
MboII GAAGA 4 cut(s) 59, 424, 682, 802
MhlI GDGCHC 4 cut(s) 193, 212, 337, 456
MluCI AATT 3 cut(s) 143, 257, 704
MlyI GAGTC 2 cut(s) 85, 692
MmeI TCCRAC 2 cut(s) 117, 801
MnlI CCTC 8 cut(s) 534, 596, 599, 602, 694, 714, 802, 840
MroI TCCGGA 1 cut(s) 147
MseI TTAA 1 cut(s) 846
MspA1I CMGCKG 1 cut(s) 225
MspI CCGG 7 cut(s) 20, 80, 148, 284, 300, 365, 477
MspR9I CCNGG 3 cut(s) 21, 284, 365
MvnI CGCG 3 cut(s) 225, 269, 418
MwoI GCNNNNNNNGC 6 cut(s) 13, 269, 426, 451, 460, 623
NciI CCSGG 3 cut(s) 21, 284, 365
NdeII GATC 3 cut(s) 114, 502, 672
NlaIII CATG 2 cut(s) 187, 390
NlaIV GGNNCC 4 cut(s) 190, 359, 576, 584
NmuCI GTSAC 2 cut(s) 245, 737
NspI RCATGY 1 cut(s) 390
PaeI GCATGC 1 cut(s) 390
PaeR7I CTCGAG 1 cut(s) 398
PcsI WCGNNNNNNNCGW 3 cut(s) 209, 345, 626
Pfl23II CGTACG 1 cut(s) 213
PflMI CCANNNNNTGG 1 cut(s) 184
PinAI ACCGGT 1 cut(s) 299
PkrI GCNGC 9 cut(s) 227, 271, 296, 311, 574, 640, 778, 855, 858
PleI GAGTC 2 cut(s) 84, 691
PpsI GAGTC 2 cut(s) 84, 691
Ppu21I YACGTR 1 cut(s) 471
PpuMI RGGWCCY 1 cut(s) 582
Psp124BI GAGCTC 1 cut(s) 456
Psp5II RGGWCCY 1 cut(s) 582
PspFI CCCAGC 1 cut(s) 237
PspLI CGTACG 1 cut(s) 213
PspN4I GGNNCC 4 cut(s) 190, 359, 576, 584
PspPI GGNCC 4 cut(s) 82, 235, 574, 582
PspPPI RGGWCCY 1 cut(s) 582
PstI CTGCAG 1 cut(s) 861
SacI GAGCTC 1 cut(s) 456
SacII CCGCGG 1 cut(s) 226
SalI GTCGAC 1 cut(s) 677
SaqAI TTAA 1 cut(s) 846
SatI GCNGC 9 cut(s) 226, 270, 295, 310, 573, 639, 777, 854, 857
Sau3AI GATC 3 cut(s) 114, 502, 672
Sau96I GGNCC 4 cut(s) 82, 235, 574, 582
ScaI AGTACT 1 cut(s) 488
SchI GAGTC 2 cut(s) 85, 692
ScrFI CCNGG 3 cut(s) 21, 284, 365
SduI GDGCHC 4 cut(s) 193, 212, 337, 456
SfaNI GCATC 3 cut(s) 25, 763, 816
SfcI CTRYAG 1 cut(s) 857
Sfr274I CTCGAG 1 cut(s) 398
Sfr303I CCGCGG 1 cut(s) 226
SgrBI CCGCGG 1 cut(s) 226
SgrDI CGTCGACG 1 cut(s) 677
SinI GGWCC 2 cut(s) 82, 582
SlaI CTCGAG 1 cut(s) 398
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
SphI GCATGC 1 cut(s) 390
Sse9I AATT 3 cut(s) 143, 257, 704
SspMI CTAG 1 cut(s) 393
SstI GAGCTC 1 cut(s) 456
StyD4I CCNGG 3 cut(s) 19, 282, 363
StyI CCWWGG 2 cut(s) 578, 760
TaaI ACNGT 5 cut(s) 323, 569, 599, 630, 716
TaiI ACGT 1 cut(s) 473
TaqI TCGA 5 cut(s) 117, 348, 399, 678, 771
TasI AATT 3 cut(s) 143, 257, 704
TatI WGTACW 2 cut(s) 54, 486
TauI GCSGC 4 cut(s) 228, 272, 312, 575
Tru1I TTAA 1 cut(s) 846
Tru9I TTAA 1 cut(s) 846
TscAI CASTG 1 cut(s) 98
TseFI GTSAC 2 cut(s) 245, 737
TseI GCWGC 5 cut(s) 294, 638, 776, 853, 856
Tsp45I GTSAC 2 cut(s) 245, 737
TspDTI ATGAA 1 cut(s) 803
TspGWI ACGGA 3 cut(s) 218, 354, 635
TspRI CASTG 1 cut(s) 98
Van91I CCANNNNNTGG 1 cut(s) 184
VpaK11BI GGWCC 2 cut(s) 82, 582
XapI RAATTY 3 cut(s) 143, 257, 704
XceI RCATGY 1 cut(s) 390
XhoI CTCGAG 1 cut(s) 398
XmiI GTMKAC 1 cut(s) 678
XspI CTAG 1 cut(s) 393
ZrmI AGTACT 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.