Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0016042

Physical Location & Seq

Genomic Coordinates Forward (+)

63683411 .. 63684642

Gene Structure 1232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG364600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCGCAGCCACGACTGGACCGACTGCCCCTACGCCCATCGAGGCGAGAAAGCACAGCGCCGCGACCCGCGTAGGTATCCCTACGCCGCCATAGTCTGCCCGGCCTTCCGCAACGGCGTCTGCTACAAGGGCGACGCGTGCGAGTACGCGCACGGGGTGTTCGAGTACTGGCTCCACCCTGCGCGTTACCGCACGCGCGCCTGCAATGCGGGCCTGTTGTGCACCCGCAAGGTCTGCTTCTTTGCTCACTCCCCGGACCAGCTGCGGGTCCCGCCACCCGAGTCGACCAAATCGTTCAAGTGTCGACAGCACCACAACAACTATGTCTATCGCCCCGTCGGAGATCACTTGCTGATGAGCGGTGCCAATGGAGCCACCTCAGTGCGGTCGCCAGAACGGTTGGCGACAAATAACAATAAGGGCTATGATTTTATGAAAATTAAAGGGAAAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

151

Amino Acids

17.34

Weight (kDa)

9.61

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH_AtC3H23	PF25512	2 - 20	7.2e-10	AtC3H23-like, CCCH zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07500
fragaria_vesca	FvH4_7g26870
malus_domestica	MD07G1248000.v1.1
prunus_persica	Prupe.2G272000_v2.0.a1
pyrus_communis	pycom07g22170
rosa_chinensis	RchiOBHm_Chr1g0373551
rosa_laevigata	RLG00000026816
rosa_multiflora	Rmu_sc0002860.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284150
rosa_rugosa	Rorug01G0378100
rosa_samantha	Rh1AG387600 Rh1BG351900 Rh1CG364600 Rh1DG382300
rosa_wichuraiana	Rw1G034780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AccB1I	GGYRCC	1 cut(s)	362
AccBSI	CCGCTC	1 cut(s)	360
AccI	GTMKAC	2 cut(s)	284, 304
AccII	CGCG	7 cut(s)	63, 70, 137, 149, 184, 196, 198
AcyI	GRCGYC	1 cut(s)	117
AdeI	CACNNNGTG	1 cut(s)	157
AfaI	GTAC	2 cut(s)	146, 167
AfiI	CCNNNNNNNGG	2 cut(s)	265, 384
AflIII	ACRYGT	1 cut(s)	135
AgsI	TTSAA	1 cut(s)	298
AleI	CACNNNNGTG	1 cut(s)	380
AluBI	AGCT	1 cut(s)	262
AluI	AGCT	1 cut(s)	262
Alw21I	GWGCWC	1 cut(s)	224
Alw44I	GTGCAC	1 cut(s)	220
Ama87I	CYCGRG	1 cut(s)	278
AoxI	GGCC	2 cut(s)	102, 211
ApaLI	GTGCAC	1 cut(s)	220
ApeKI	GCWGC	2 cut(s)	6, 262
AspLEI	GCGC	6 cut(s)	6, 60, 151, 184, 198, 200
AspS9I	GGNCC	4 cut(s)	18, 211, 256, 268
AsuC2I	CCSGG	2 cut(s)	101, 254
AvaI	CYCGRG	1 cut(s)	278
AvaII	GGWCC	3 cut(s)	18, 256, 268
BaeGI	GKGCMC	1 cut(s)	224
BanI	GGYRCC	1 cut(s)	362
Bbv12I	GWGCWC	1 cut(s)	224
BbvI	GCAGC	2 cut(s)	18, 249
BccI	CCATC	1 cut(s)	45
BceAI	ACGGC	1 cut(s)	130
BciVI	GTATCC	1 cut(s)	87
BcnI	CCSGG	2 cut(s)	101, 254
BfoI	RGCGCY	1 cut(s)	61
BfuI	GTATCC	1 cut(s)	87
BisI	GCNGC	4 cut(s)	7, 61, 87, 263
BlsI	GCNGC	4 cut(s)	8, 62, 88, 264
BmcAI	AGTACT	1 cut(s)	167
Bme1390I	CCNGG	2 cut(s)	101, 254
Bme18I	GGWCC	3 cut(s)	18, 256, 268
BmeT110I	CYCGRG	1 cut(s)	278
BmgT120I	GGNCC	4 cut(s)	18, 211, 256, 268
BmiI	GGNNCC	5 cut(s)	173, 269, 270, 364, 373
BmrFI	CCNGG	2 cut(s)	101, 254
BpuMI	CCSGG	2 cut(s)	101, 254
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 384
Bse1I	ACTGG	2 cut(s)	20, 173
Bse3DI	GCAATG	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	252
BseLI	CCNNNNNNNGG	2 cut(s)	265, 384
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	2 cut(s)	20, 173
BsePI	GCGCGC	1 cut(s)	196
BseSI	GKGCMC	1 cut(s)	224
BseXI	GCAGC	2 cut(s)	18, 249
Bsh1236I	CGCG	7 cut(s)	63, 70, 137, 149, 184, 196, 198
Bsh1285I	CGRYCG	1 cut(s)	389
BshFI	GGCC	2 cut(s)	104, 213
BshNI	GGYRCC	1 cut(s)	362
BsiEI	CGRYCG	1 cut(s)	389
BsiHKAI	GWGCWC	1 cut(s)	224
BsiHKCI	CYCGRG	1 cut(s)	278
BsiSI	CCGG	2 cut(s)	101, 254
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	2 cut(s)	265, 384
BsmFI	GGGAC	1 cut(s)	254
BsnI	GGCC	2 cut(s)	104, 213
BsoBI	CYCGRG	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp143I	GATC	1 cut(s)	343
BspANI	GGCC	2 cut(s)	104, 213
BspCNI	CTCAG	1 cut(s)	392
BspFNI	CGCG	7 cut(s)	63, 70, 137, 149, 184, 196, 198
BspLI	GGNNCC	5 cut(s)	173, 269, 270, 364, 373
BspT107I	GGYRCC	1 cut(s)	362
BsrBI	CCGCTC	1 cut(s)	360
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	2 cut(s)	20, 173
BssECI	CCNNGG	1 cut(s)	252
BssHII	GCGCGC	1 cut(s)	196
BssMI	GATC	1 cut(s)	343
BssNI	GRCGYC	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	399
BstACI	GRCGYC	1 cut(s)	117
BstAPI	GCANNNNNTGC	1 cut(s)	234
BstC8I	GCNNGC	5 cut(s)	139, 194, 198, 202, 211
BstDEI	CTNAG	1 cut(s)	379
BstFNI	CGCG	7 cut(s)	63, 70, 137, 149, 184, 196, 198
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	6 cut(s)	6, 60, 151, 184, 198, 200
BstKTI	GATC	1 cut(s)	346
BstMBI	GATC	1 cut(s)	343
BstMCI	CGRYCG	1 cut(s)	389
BstMWI	GCNNNNNNNGC	8 cut(s)	129, 138, 206, 210, 219, 234, 271, 371
BstSCI	CCNGG	2 cut(s)	99, 252
BstSLI	GKGCMC	1 cut(s)	224
BstUI	CGCG	7 cut(s)	63, 70, 137, 149, 184, 196, 198
BstV1I	GCAGC	2 cut(s)	18, 249
BsuI	GTATCC	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	104, 213
BtsIMutI	CAGTG	1 cut(s)	387
Cac8I	GCNNGC	5 cut(s)	139, 194, 198, 202, 211
CfoI	GCGC	6 cut(s)	6, 60, 151, 184, 198, 200
Cfr13I	GGNCC	4 cut(s)	18, 211, 256, 268
CseI	GACGC	2 cut(s)	106, 143
Csp6I	GTAC	2 cut(s)	145, 166
CviJI	RGCY	7 cut(s)	9, 104, 172, 213, 262, 374, 423
CviKI_1	RGCY	7 cut(s)	9, 104, 172, 213, 262, 374, 423
CviQI	GTAC	2 cut(s)	145, 166
DdeI	CTNAG	1 cut(s)	379
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
DraIII	CACNNNGTG	1 cut(s)	157
Eco47I	GGWCC	3 cut(s)	18, 256, 268
Eco88I	CYCGRG	1 cut(s)	278
EcoO109I	RGGNCCY	1 cut(s)	268
FaiI	YATR	4 cut(s)	92, 324, 426, 434
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FaqI	GGGAC	1 cut(s)	254
FauI	CCCGC	5 cut(s)	75, 202, 233, 258, 279
FblI	GTMKAC	2 cut(s)	284, 304
Fnu4HI	GCNGC	4 cut(s)	7, 61, 87, 263
Fsp4HI	GCNGC	4 cut(s)	7, 61, 87, 263
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	6 cut(s)	5, 59, 150, 183, 197, 199
GluI	GCNGC	4 cut(s)	7, 61, 87, 263
HaeII	RGCGCY	1 cut(s)	61
HaeIII	GGCC	2 cut(s)	104, 213
HapII	CCGG	2 cut(s)	101, 254
HgaI	GACGC	2 cut(s)	106, 143
HhaI	GCGC	6 cut(s)	6, 60, 151, 184, 198, 200
Hin1I	GRCGYC	1 cut(s)	117
Hin6I	GCGC	6 cut(s)	4, 58, 149, 182, 196, 198
HinP1I	GCGC	6 cut(s)	4, 58, 149, 182, 196, 198
HincII	GTYRAC	2 cut(s)	285, 305
HindII	GTYRAC	2 cut(s)	285, 305
HinfI	GANTC	1 cut(s)	281
HpaII	CCGG	2 cut(s)	101, 254
Hpy166II	GTNNAC	3 cut(s)	222, 285, 305
Hpy188I	TCNGA	1 cut(s)	341
Hpy8I	GTNNAC	3 cut(s)	222, 285, 305
Hpy99I	CGWCG	2 cut(s)	137, 341
HpyAV	CCTTC	1 cut(s)	115
HpyCH4III	ACNGT	1 cut(s)	399
HpyCH4V	TGCA	2 cut(s)	204, 222
HpyF10VI	GCNNNNNNNGC	8 cut(s)	129, 138, 206, 210, 219, 234, 271, 371
HpyF3I	CTNAG	1 cut(s)	379
Hsp92I	GRCGYC	1 cut(s)	117
HspAI	GCGC	6 cut(s)	4, 58, 149, 182, 196, 198
KflI	GGGWCCC	1 cut(s)	268
Kzo9I	GATC	1 cut(s)	343
LmnI	GCTCC	2 cut(s)	177, 371
LpnPI	CCDG	8 cut(s)	114, 154, 192, 214, 227, 267, 272, 405
Lsp1109I	GCAGC	2 cut(s)	18, 249
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	1 cut(s)	345
MbiI	CCGCTC	1 cut(s)	360
MboI	GATC	1 cut(s)	343
MhlI	GDGCHC	1 cut(s)	224
MluCI	AATT	1 cut(s)	438
MluI	ACGCGT	1 cut(s)	135
MlyI	GAGTC	1 cut(s)	290
MmeI	TCCRAC	1 cut(s)	319
MnlI	CCTC	2 cut(s)	35, 388
MseI	TTAA	1 cut(s)	441
MslI	CAYNNNNRTG	1 cut(s)	380
MspA1I	CMGCKG	1 cut(s)	262
MspI	CCGG	2 cut(s)	101, 254
MspR9I	CCNGG	2 cut(s)	101, 254
MvnI	CGCG	7 cut(s)	63, 70, 137, 149, 184, 196, 198
MwoI	GCNNNNNNNGC	8 cut(s)	129, 138, 206, 210, 219, 234, 271, 371
NciI	CCSGG	2 cut(s)	101, 254
NdeII	GATC	1 cut(s)	343
NlaIV	GGNNCC	5 cut(s)	173, 269, 270, 364, 373
NsbI	TGCGCA	1 cut(s)	5
OliI	CACNNNNGTG	1 cut(s)	380
PauI	GCGCGC	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	3 cut(s)	18, 159, 290
PkrI	GCNGC	4 cut(s)	8, 62, 88, 264
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
PpuMI	RGGWCCY	1 cut(s)	268
Psp5II	RGGWCCY	1 cut(s)	268
PspN4I	GGNNCC	5 cut(s)	173, 269, 270, 364, 373
PspPI	GGNCC	4 cut(s)	18, 211, 256, 268
PspPPI	RGGWCCY	1 cut(s)	268
PteI	GCGCGC	1 cut(s)	196
PvuII	CAGCTG	1 cut(s)	262
RsaI	GTAC	2 cut(s)	146, 167
RsaNI	GTAC	2 cut(s)	145, 166
RseI	CAYNNNNRTG	1 cut(s)	380
SalI	GTCGAC	2 cut(s)	283, 303
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	4 cut(s)	7, 61, 87, 263
Sau3AI	GATC	1 cut(s)	343
Sau96I	GGNCC	4 cut(s)	18, 211, 256, 268
ScaI	AGTACT	1 cut(s)	167
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	2 cut(s)	101, 254
SduI	GDGCHC	1 cut(s)	224
SetI	ASST	5 cut(s)	77, 234, 264, 380, 454
SinI	GGWCC	3 cut(s)	18, 256, 268
SmiMI	CAYNNNNRTG	1 cut(s)	380
Sse9I	AATT	1 cut(s)	438
StyD4I	CCNGG	2 cut(s)	99, 252
TaaI	ACNGT	1 cut(s)	399
TaqI	TCGA	4 cut(s)	40, 162, 284, 304
TaqII	GACCGA	1 cut(s)	35
TasI	AATT	1 cut(s)	438
TatI	WGTACW	1 cut(s)	165
TauI	GCSGC	2 cut(s)	63, 89
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	1 cut(s)	387
TseI	GCWGC	2 cut(s)	6, 262
TspDTI	ATGAA	1 cut(s)	449
TspRI	CASTG	1 cut(s)	387
VneI	GTGCAC	1 cut(s)	220
VpaK11BI	GGWCC	3 cut(s)	18, 256, 268
XmiI	GTMKAC	2 cut(s)	284, 304
ZrmI	AGTACT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.