Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0016042

Physical Location & Seq

Genomic Coordinates Reverse (-)

49160829 .. 49164179

Gene Structure 3351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0378100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAAGGTGTTTTTTGGGAGTCCAGGAAAGATAAGTGGGCTGCTCCTCAGAATTGGACAGTGCTTTTTTGCTGCTGCTTCTATTGGGGTCATGGTCTCTGCTCATGGCTTCTACACCTCGACTGCATTTTGCTATTTAATTGCATCAATGGGGCTTGAATTCCTTTGGAGTTTTGGACTTGCTTGCCTTGATTTTCATGCTTTGAGGTCAAAGAGGAGCTTGCAGAATCCTGTTTTAGTGAGCCTATTTGTTGTTGGAGACTGGGTAACTGCTACTCTTTCACTGGCAGGTGCATGCTCATCAGCTGGGGTGGCAGTTCTGTTCTCAAGAGACTTGGGTTACTGCTCCAAGACATTTCCATGCACCAGGTTCCAAATCGGGGTGGCTTTCGCTTTTATCTCATGGTTCCTCCTCGCTATTTCCTCACTTGTCATGTTTTGGCTGCTAGGTGCAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

152

Amino Acids

16.37

Weight (kDa)

9.08

Isoelectric Point (pI)

37.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	7 - 137	1.2e-26	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07500
fragaria_vesca	FvH4_7g26870
malus_domestica	MD07G1248000.v1.1
prunus_persica	Prupe.2G272000_v2.0.a1
pyrus_communis	pycom07g22170
rosa_chinensis	RchiOBHm_Chr1g0373551
rosa_laevigata	RLG00000026816
rosa_multiflora	Rmu_sc0002860.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284150
rosa_rugosa	Rorug01G0378100
rosa_samantha	Rh1AG387600 Rh1BG351900 Rh1CG364600 Rh1DG382300
rosa_wichuraiana	Rw1G034780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	278
Acc36I	ACCTGC	1 cut(s)	278
AcsI	RAATTY	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	379
AgsI	TTSAA	1 cut(s)	158
AjnI	CCWGG	2 cut(s)	22, 365
AluBI	AGCT	2 cut(s)	219, 305
AluI	AGCT	2 cut(s)	219, 305
Alw26I	GTCTC	3 cut(s)	100, 252, 324
ApeKI	GCWGC	4 cut(s)	40, 71, 74, 442
ApoI	RAATTY	1 cut(s)	158
BbvI	GCAGC	4 cut(s)	27, 58, 61, 429
BciT130I	CCWGG	2 cut(s)	24, 367
BcoDI	GTCTC	3 cut(s)	100, 252, 324
BfaI	CTAG	1 cut(s)	446
BfuAI	ACCTGC	1 cut(s)	278
BisI	GCNGC	4 cut(s)	41, 72, 75, 443
BlsI	GCNGC	4 cut(s)	42, 73, 76, 444
Bme1390I	CCNGG	2 cut(s)	24, 367
BmiI	GGNNCC	2 cut(s)	371, 407
BmrFI	CCNGG	2 cut(s)	24, 367
BmrI	ACTGGG	1 cut(s)	271
BmsI	GCATC	1 cut(s)	152
BmuI	ACTGGG	1 cut(s)	271
BpuEI	CTTGAG	1 cut(s)	310
BsaI	GGTCTC	1 cut(s)	100
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
Bse1I	ACTGG	2 cut(s)	266, 288
BseBI	CCWGG	2 cut(s)	24, 367
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseMII	CTCAG	1 cut(s)	61
BseNI	ACTGG	2 cut(s)	266, 288
BseRI	GAGGAG	3 cut(s)	35, 229, 401
BseXI	GCAGC	4 cut(s)	27, 58, 61, 429
BseYI	CCCAGC	1 cut(s)	305
BslI	CCNNNNNNNGG	1 cut(s)	379
BsmAI	GTCTC	3 cut(s)	100, 252, 324
Bso31I	GGTCTC	1 cut(s)	100
BspCNI	CTCAG	1 cut(s)	60
BspLI	GGNNCC	2 cut(s)	371, 407
BspMI	ACCTGC	1 cut(s)	278
BspTNI	GGTCTC	1 cut(s)	100
BsrI	ACTGG	2 cut(s)	266, 288
Bst2UI	CCWGG	2 cut(s)	24, 367
Bst4CI	ACNGT	1 cut(s)	60
BstC8I	GCNNGC	3 cut(s)	184, 221, 295
BstDEI	CTNAG	1 cut(s)	47
BstMAI	GTCTC	3 cut(s)	100, 252, 324
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstNI	CCWGG	2 cut(s)	24, 367
BstNSI	RCATGY	1 cut(s)	297
BstSCI	CCNGG	2 cut(s)	22, 365
BstV1I	GCAGC	4 cut(s)	27, 58, 61, 429
BtsI	GCAGTG	1 cut(s)	459
BtsIMutI	CAGTG	3 cut(s)	65, 281, 459
BveI	ACCTGC	1 cut(s)	278
Cac8I	GCNNGC	3 cut(s)	184, 221, 295
CsiI	ACCWGGT	1 cut(s)	365
CviAII	CATG	7 cut(s)	91, 104, 197, 294, 360, 402, 433
CviJI	RGCY	8 cut(s)	40, 108, 154, 219, 243, 305, 386, 442
CviKI_1	RGCY	8 cut(s)	40, 108, 154, 219, 243, 305, 386, 442
DdeI	CTNAG	1 cut(s)	47
Eco31I	GGTCTC	1 cut(s)	100
EcoRI	GAATTC	1 cut(s)	158
EcoRII	CCWGG	2 cut(s)	22, 365
FaeI	CATG	7 cut(s)	94, 107, 200, 297, 363, 405, 436
FaiI	YATR	7 cut(s)	92, 105, 198, 295, 361, 403, 434
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FatI	CATG	7 cut(s)	90, 103, 196, 293, 359, 401, 432
Fnu4HI	GCNGC	4 cut(s)	41, 72, 75, 443
Fsp4HI	GCNGC	4 cut(s)	41, 72, 75, 443
FspBI	CTAG	1 cut(s)	446
GluI	GCNGC	4 cut(s)	41, 72, 75, 443
GsaI	CCCAGC	1 cut(s)	309
Hin1II	CATG	7 cut(s)	94, 107, 200, 297, 363, 405, 436
HinfI	GANTC	2 cut(s)	19, 226
Hpy188I	TCNGA	1 cut(s)	50
Hpy188III	TCNNGA	1 cut(s)	327
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4V	TGCA	6 cut(s)	125, 143, 223, 293, 363, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	1 cut(s)	47
Hsp92II	CATG	7 cut(s)	94, 107, 200, 297, 363, 405, 436
LmnI	GCTCC	3 cut(s)	48, 216, 350
LpnPI	CCDG	9 cut(s)	9, 36, 243, 247, 269, 273, 291, 352, 379
Lsp1109I	GCAGC	4 cut(s)	27, 58, 61, 429
LweI	GCATC	1 cut(s)	152
MabI	ACCWGGT	1 cut(s)	365
MaeI	CTAG	1 cut(s)	446
MaeIII	GTNAC	2 cut(s)	265, 338
MluCI	AATT	3 cut(s)	51, 138, 158
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	7 cut(s)	56, 127, 198, 207, 419, 422, 433
MseI	TTAA	1 cut(s)	137
MslI	CAYNNNNRTG	1 cut(s)	358
MspA1I	CMGCKG	1 cut(s)	305
MspR9I	CCNGG	2 cut(s)	24, 367
MvaI	CCWGG	2 cut(s)	24, 367
MwoI	GCNNNNNNNGC	1 cut(s)	311
NlaIII	CATG	7 cut(s)	94, 107, 200, 297, 363, 405, 436
NlaIV	GGNNCC	2 cut(s)	371, 407
NspI	RCATGY	1 cut(s)	297
PaeI	GCATGC	1 cut(s)	297
PaqCI	CACCTGC	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	226
PfoI	TCCNGGA	1 cut(s)	22
PkrI	GCNGC	4 cut(s)	42, 73, 76, 444
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
Psp6I	CCWGG	2 cut(s)	22, 365
PspFI	CCCAGC	1 cut(s)	305
PspGI	CCWGG	2 cut(s)	22, 365
PspN4I	GGNNCC	2 cut(s)	371, 407
PvuII	CAGCTG	1 cut(s)	305
RseI	CAYNNNNRTG	1 cut(s)	358
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	4 cut(s)	41, 72, 75, 443
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	2 cut(s)	24, 367
SetI	ASST	8 cut(s)	9, 119, 209, 221, 292, 307, 371, 451
SexAI	ACCWGGT	1 cut(s)	365
SfaNI	GCATC	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	358
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
SphI	GCATGC	1 cut(s)	297
Sse9I	AATT	3 cut(s)	51, 138, 158
SspMI	CTAG	1 cut(s)	446
StyD4I	CCNGG	2 cut(s)	22, 365
TaaI	ACNGT	1 cut(s)	60
TaqI	TCGA	1 cut(s)	119
TasI	AATT	3 cut(s)	51, 138, 158
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TscAI	CASTG	3 cut(s)	65, 288, 459
TseI	GCWGC	4 cut(s)	40, 71, 74, 442
TspDTI	ATGAA	2 cut(s)	17, 185
TspRI	CASTG	3 cut(s)	65, 288, 459
XapI	RAATTY	1 cut(s)	158
XceI	RCATGY	1 cut(s)	297
XspI	CTAG	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.