FvH4_7g26870

Zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016042
Physical Location & Seq
Forward (+)
20190870 .. 20191601
732 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26870.t1

Sequence Viewer

Length: 732 bp
ATGTTTAACGGGTACCAATTCTATGAGTTCGTCCCTGTTACGGTTCCGGTTGAGCAGCTCTTCCACCATGACCATGACAATGGTCTCTTCACCTCAGACGACTTCCGGATGTACTCCTACAAAATCAAGCGTTGCCCGAGAATGCGCAGCCACGACTGGACCGACTGCCCCTACGCGCATCGTGGCGAGAAGGCTCAGCGCCGCGACCCGCGTAGGTATCCCTACTCCGCCATAGTCTGCCCGGCGTTCCGCAACGGCATCTGCTACAAGGGCGACGCGTGCCAGTACGCGCACGGGGTGTTTGAGTATTGGCTCCACCCTGCGCGTTACCGCACGCGCGTCTGCAATGCGGGCCTGTTGTGCACCCGAAAGGTCTGTTTCTTTGCTCACTCGCCGGACCAGCTGCGGACCCCGCCACCGGAGTCGACCAAGTCGTTCAAGTGTCGGCAGCACCACCACAACCATGTCTATCGCCCCGTCGGAGATCACTTGCTGATGAACGGTGCCAATGGAGCCACCTCAGTGCGGTCGCCAGAACGGTTGGCGACAAATAACAATGTTAATGTCGCCGGCAGGTTCTCGAAAATTTTGAGCAGTTTGAGGGCATTGAGGCTAAGTGATCAGGATGGCAATGGTGGTAGTGGTGAGATGGATGTGAGGGTTGATGAGTATGGGCTGCCGGAAACTTTGGATGTGGGGGAGGTTGATTGGGTTTCGGAGTTGTTGCAGTAA

Protein Analysis

244

Amino Acids

28.0

Weight (kDa)

8.55

Isoelectric Point (pI)

35.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH_AtC3H23 PF25512 34 - 67 2.3e-19 AtC3H23-like, CCCH zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016042)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07500
fragaria_vesca FvH4_7g26870
malus_domestica MD07G1248000.v1.1
prunus_persica Prupe.2G272000_v2.0.a1
pyrus_communis pycom07g22170
rosa_chinensis RchiOBHm_Chr1g0373551
rosa_laevigata RLG00000026816
rosa_multiflora Rmu_sc0002860.1_g000004
rosa_roxburghii Rroxscaffold_4G00284150
rosa_rugosa Rorug01G0378100
rosa_samantha Rh1AG387600 Rh1BG351900 Rh1CG364600 Rh1DG382300
rosa_wichuraiana Rw1G034780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 146
Acc36I ACCTGC 1 cut(s) 564
Acc65I GGTACC 1 cut(s) 12
AccB1I GGYRCC 2 cut(s) 12, 503
AccI GTMKAC 1 cut(s) 425
AccII CGCG 8 cut(s) 176, 204, 211, 278, 290, 325, 337, 339
AccIII TCCGGA 1 cut(s) 105
AciI CCGC 9 cut(s) 202, 209, 228, 250, 331, 350, 406, 413, 526
AcsI RAATTY 1 cut(s) 585
AdeI CACNNNGTG 1 cut(s) 298
AfaI GTAC 3 cut(s) 14, 113, 287
AfiI CCNNNNNNNGG 3 cut(s) 40, 418, 525
AflIII ACRYGT 1 cut(s) 276
AgsI TTSAA 1 cut(s) 439
AleI CACNNNNGTG 1 cut(s) 521
AluBI AGCT 2 cut(s) 58, 403
AluI AGCT 2 cut(s) 58, 403
Alw21I GWGCWC 1 cut(s) 365
Alw26I GTCTC 1 cut(s) 89
Alw44I GTGCAC 1 cut(s) 361
Ama87I CYCGRG 1 cut(s) 136
Aor13HI TCCGGA 1 cut(s) 105
AoxI GGCC 1 cut(s) 352
ApaLI GTGCAC 1 cut(s) 361
ApeKI GCWGC 5 cut(s) 55, 147, 403, 448, 676
ApoI RAATTY 1 cut(s) 585
Asp718I GGTACC 1 cut(s) 12
AspLEI GCGC 6 cut(s) 147, 178, 201, 292, 325, 339
AspS9I GGNCC 4 cut(s) 159, 352, 397, 408
AsuC2I CCSGG 1 cut(s) 242
AsuHPI GGTGA 2 cut(s) 82, 656
AvaI CYCGRG 1 cut(s) 136
AvaII GGWCC 3 cut(s) 159, 397, 408
BaeGI GKGCMC 1 cut(s) 365
BanI GGYRCC 2 cut(s) 12, 503
Bbv12I GWGCWC 1 cut(s) 365
BbvI GCAGC 5 cut(s) 67, 159, 390, 460, 663
BccI CCATC 2 cut(s) 620, 643
BceAI ACGGC 1 cut(s) 271
BciVI GTATCC 1 cut(s) 228
BclI TGATCA 1 cut(s) 619
BcnI CCSGG 1 cut(s) 242
BcoDI GTCTC 1 cut(s) 89
BfoI RGCGCY 1 cut(s) 202
BfuAI ACCTGC 1 cut(s) 564
BfuI GTATCC 1 cut(s) 228
BisI GCNGC 6 cut(s) 56, 148, 202, 404, 449, 677
BlpI GCTNAGC 1 cut(s) 195
BlsI GCNGC 6 cut(s) 57, 149, 203, 405, 450, 678
Bme1390I CCNGG 1 cut(s) 242
Bme18I GGWCC 3 cut(s) 159, 397, 408
BmeT110I CYCGRG 1 cut(s) 136
BmgT120I GGNCC 4 cut(s) 159, 352, 397, 408
BmiI GGNNCC 6 cut(s) 14, 45, 314, 410, 505, 514
BmrFI CCNGG 1 cut(s) 242
BmsI GCATC 2 cut(s) 187, 267
BoxI GACNNNNGTC 1 cut(s) 81
Bpu1102I GCTNAGC 1 cut(s) 195
BpuMI CCSGG 1 cut(s) 242
BsaI GGTCTC 1 cut(s) 89
BsaWI WCCGGW 3 cut(s) 46, 105, 418
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 418, 525
Bse118I RCCGGY 1 cut(s) 569
Bse1I ACTGG 2 cut(s) 161, 283
Bse3DI GCAATG 2 cut(s) 352, 637
BseAI TCCGGA 1 cut(s) 105
BseGI GGATG 4 cut(s) 114, 631, 658, 697
BseLI CCNNNNNNNGG 3 cut(s) 40, 418, 525
BseMI GCAATG 2 cut(s) 352, 637
BseMII CTCAG 3 cut(s) 108, 209, 534
BseNI ACTGG 2 cut(s) 161, 283
BseSI GKGCMC 1 cut(s) 365
BseXI GCAGC 5 cut(s) 67, 159, 390, 460, 663
Bsh1236I CGCG 8 cut(s) 176, 204, 211, 278, 290, 325, 337, 339
Bsh1285I CGRYCG 1 cut(s) 530
BshFI GGCC 1 cut(s) 354
BshNI GGYRCC 2 cut(s) 12, 503
BsiEI CGRYCG 1 cut(s) 530
BsiHKAI GWGCWC 1 cut(s) 365
BsiHKCI CYCGRG 1 cut(s) 136
BsiSI CCGG 7 cut(s) 47, 106, 242, 395, 419, 570, 680
BslFI GGGAC 1 cut(s) 17
BslI CCNNNNNNNGG 3 cut(s) 40, 418, 525
BsmAI GTCTC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 17
BsmI GAATGC 1 cut(s) 147
BsnI GGCC 1 cut(s) 354
Bso31I GGTCTC 1 cut(s) 89
BsoBI CYCGRG 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 365
Bsp13I TCCGGA 1 cut(s) 105
Bsp143I GATC 2 cut(s) 484, 619
Bsp1720I GCTNAGC 1 cut(s) 195
BspACI CCGC 9 cut(s) 202, 209, 228, 250, 331, 350, 406, 413, 526
BspANI GGCC 1 cut(s) 354
BspCNI CTCAG 3 cut(s) 107, 208, 533
BspEI TCCGGA 1 cut(s) 105
BspFNI CGCG 8 cut(s) 176, 204, 211, 278, 290, 325, 337, 339
BspLI GGNNCC 6 cut(s) 14, 45, 314, 410, 505, 514
BspMI ACCTGC 1 cut(s) 564
BspQI GCTCTTC 1 cut(s) 65
BspT107I GGYRCC 2 cut(s) 12, 503
BspTNI GGTCTC 1 cut(s) 89
BsrDI GCAATG 2 cut(s) 352, 637
BsrFI RCCGGY 1 cut(s) 569
BsrI ACTGG 2 cut(s) 161, 283
BssAI RCCGGY 1 cut(s) 569
BssMI GATC 2 cut(s) 484, 619
Bst4CI ACNGT 3 cut(s) 43, 503, 540
Bst6I CTCTTC 2 cut(s) 65, 92
BstC8I GCNNGC 4 cut(s) 280, 335, 352, 571
BstDEI CTNAG 4 cut(s) 94, 195, 520, 614
BstF5I GGATG 4 cut(s) 114, 631, 658, 697
BstFNI CGCG 8 cut(s) 176, 204, 211, 278, 290, 325, 337, 339
BstH2I RGCGCY 1 cut(s) 202
BstHHI GCGC 6 cut(s) 147, 178, 201, 292, 325, 339
BstKTI GATC 2 cut(s) 487, 622
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 2 cut(s) 484, 619
BstMCI CGRYCG 1 cut(s) 530
BstMWI GCNNNNNNNGC 7 cut(s) 270, 279, 351, 360, 400, 412, 512
BstPAI GACNNNNGTC 1 cut(s) 81
BstSCI CCNGG 1 cut(s) 240
BstSLI GKGCMC 1 cut(s) 365
BstUI CGCG 8 cut(s) 176, 204, 211, 278, 290, 325, 337, 339
BstV1I GCAGC 5 cut(s) 67, 159, 390, 460, 663
BstXI CCANNNNNNTGG 1 cut(s) 80
BsuI GTATCC 1 cut(s) 228
BsuRI GGCC 1 cut(s) 354
BtsCI GGATG 4 cut(s) 114, 631, 658, 697
BtsIMutI CAGTG 1 cut(s) 528
BveI ACCTGC 1 cut(s) 564
Cac8I GCNNGC 4 cut(s) 280, 335, 352, 571
CfoI GCGC 6 cut(s) 147, 178, 201, 292, 325, 339
Cfr10I RCCGGY 1 cut(s) 569
Cfr13I GGNCC 4 cut(s) 159, 352, 397, 408
CseI GACGC 2 cut(s) 284, 328
Csp6I GTAC 3 cut(s) 13, 112, 286
CviAII CATG 3 cut(s) 68, 74, 464
CviJI RGCY 9 cut(s) 58, 150, 194, 313, 354, 403, 515, 613, 676
CviKI_1 RGCY 9 cut(s) 58, 150, 194, 313, 354, 403, 515, 613, 676
CviQI GTAC 3 cut(s) 13, 112, 286
DdeI CTNAG 4 cut(s) 94, 195, 520, 614
DpnI GATC 2 cut(s) 486, 621
DpnII GATC 2 cut(s) 484, 619
DraIII CACNNNGTG 1 cut(s) 298
Eam1104I CTCTTC 2 cut(s) 65, 92
EarI CTCTTC 2 cut(s) 65, 92
EciI GGCGGA 1 cut(s) 217
Eco31I GGTCTC 1 cut(s) 89
Eco47I GGWCC 3 cut(s) 159, 397, 408
Eco88I CYCGRG 1 cut(s) 136
FaeI CATG 3 cut(s) 71, 77, 467
FaiI YATR 6 cut(s) 24, 69, 75, 233, 465, 672
FaqI GGGAC 1 cut(s) 17
FatI CATG 3 cut(s) 67, 73, 463
FauI CCCGC 3 cut(s) 216, 343, 420
FbaI TGATCA 1 cut(s) 619
FblI GTMKAC 1 cut(s) 425
Fnu4HI GCNGC 6 cut(s) 56, 148, 202, 404, 449, 677
FokI GGATG 4 cut(s) 121, 638, 665, 704
Fsp4HI GCNGC 6 cut(s) 56, 148, 202, 404, 449, 677
FspI TGCGCA 1 cut(s) 146
GlaI GCGC 6 cut(s) 146, 177, 200, 291, 324, 338
GluI GCNGC 6 cut(s) 56, 148, 202, 404, 449, 677
HaeII RGCGCY 1 cut(s) 202
HaeIII GGCC 1 cut(s) 354
HapII CCGG 7 cut(s) 47, 106, 242, 395, 419, 570, 680
HgaI GACGC 2 cut(s) 284, 328
HhaI GCGC 6 cut(s) 147, 178, 201, 292, 325, 339
Hin1II CATG 3 cut(s) 71, 77, 467
Hin6I GCGC 6 cut(s) 145, 176, 199, 290, 323, 337
HinP1I GCGC 6 cut(s) 145, 176, 199, 290, 323, 337
HincII GTYRAC 1 cut(s) 426
HindII GTYRAC 1 cut(s) 426
HinfI GANTC 1 cut(s) 422
HpaII CCGG 7 cut(s) 47, 106, 242, 395, 419, 570, 680
HphI GGTGA 2 cut(s) 82, 656
Hpy166II GTNNAC 2 cut(s) 363, 426
Hpy188I TCNGA 3 cut(s) 97, 482, 718
Hpy188III TCNNGA 3 cut(s) 106, 580, 623
Hpy8I GTNNAC 2 cut(s) 363, 426
Hpy99I CGWCG 2 cut(s) 278, 482
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 3 cut(s) 43, 503, 540
HpyCH4V TGCA 3 cut(s) 345, 363, 727
HpyF10VI GCNNNNNNNGC 7 cut(s) 270, 279, 351, 360, 400, 412, 512
HpyF3I CTNAG 4 cut(s) 94, 195, 520, 614
Hsp92II CATG 3 cut(s) 71, 77, 467
HspAI GCGC 6 cut(s) 145, 176, 199, 290, 323, 337
Kpn2I TCCGGA 1 cut(s) 105
KpnI GGTACC 1 cut(s) 16
KroI GCCGGC 1 cut(s) 569
KroNI GCCGGC 1 cut(s) 571
Ksp22I TGATCA 1 cut(s) 619
Kzo9I GATC 2 cut(s) 484, 619
LguI GCTCTTC 1 cut(s) 65
LmnI GCTCC 2 cut(s) 318, 512
Lsp1109I GCAGC 5 cut(s) 67, 159, 390, 460, 663
LweI GCATC 2 cut(s) 187, 267
MaeIII GTNAC 2 cut(s) 37, 326
MalI GATC 2 cut(s) 486, 621
MboI GATC 2 cut(s) 484, 619
MboII GAAGA 2 cut(s) 52, 79
MhlI GDGCHC 1 cut(s) 365
MluCI AATT 2 cut(s) 17, 585
MluI ACGCGT 1 cut(s) 276
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 1 cut(s) 460
MnlI CCTC 6 cut(s) 103, 529, 594, 603, 651, 694
MroI TCCGGA 1 cut(s) 105
MroNI GCCGGC 1 cut(s) 569
MseI TTAA 2 cut(s) 6, 561
MslI CAYNNNNRTG 4 cut(s) 72, 78, 462, 521
MspA1I CMGCKG 1 cut(s) 403
MspI CCGG 7 cut(s) 47, 106, 242, 395, 419, 570, 680
MspR9I CCNGG 1 cut(s) 242
Mva1269I GAATGC 1 cut(s) 147
MvnI CGCG 8 cut(s) 176, 204, 211, 278, 290, 325, 337, 339
MwoI GCNNNNNNNGC 7 cut(s) 270, 279, 351, 360, 400, 412, 512
NaeI GCCGGC 1 cut(s) 571
NciI CCSGG 1 cut(s) 242
NdeII GATC 2 cut(s) 484, 619
NgoMIV GCCGGC 1 cut(s) 569
NlaIII CATG 3 cut(s) 71, 77, 467
NlaIV GGNNCC 6 cut(s) 14, 45, 314, 410, 505, 514
NsbI TGCGCA 1 cut(s) 146
OliI CACNNNNGTG 1 cut(s) 521
PciSI GCTCTTC 1 cut(s) 65
PcsI WCGNNNNNNNCGW 2 cut(s) 159, 431
PctI GAATGC 1 cut(s) 147
PdiI GCCGGC 1 cut(s) 571
PflFI GACNNNGTC 1 cut(s) 430
PkrI GCNGC 6 cut(s) 57, 149, 203, 405, 450, 678
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
PshAI GACNNNNGTC 1 cut(s) 81
PspN4I GGNNCC 6 cut(s) 14, 45, 314, 410, 505, 514
PspPI GGNCC 4 cut(s) 159, 352, 397, 408
PsyI GACNNNGTC 1 cut(s) 430
PvuII CAGCTG 1 cut(s) 403
RsaI GTAC 3 cut(s) 14, 113, 287
RsaNI GTAC 3 cut(s) 13, 112, 286
RseI CAYNNNNRTG 4 cut(s) 72, 78, 462, 521
SalI GTCGAC 1 cut(s) 424
SapI GCTCTTC 1 cut(s) 65
SaqAI TTAA 2 cut(s) 6, 561
SatI GCNGC 6 cut(s) 56, 148, 202, 404, 449, 677
Sau3AI GATC 2 cut(s) 484, 619
Sau96I GGNCC 4 cut(s) 159, 352, 397, 408
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 1 cut(s) 242
SduI GDGCHC 1 cut(s) 365
SetI ASST 8 cut(s) 60, 95, 218, 375, 405, 521, 578, 705
SfaNI GCATC 2 cut(s) 187, 267
SinI GGWCC 3 cut(s) 159, 397, 408
SmiMI CAYNNNNRTG 4 cut(s) 72, 78, 462, 521
Sse9I AATT 2 cut(s) 17, 585
SsiI CCGC 9 cut(s) 202, 209, 228, 250, 331, 350, 406, 413, 526
StyD4I CCNGG 1 cut(s) 240
TaaI ACNGT 3 cut(s) 43, 503, 540
TaqI TCGA 2 cut(s) 425, 581
TaqII GACCGA 1 cut(s) 176
TasI AATT 2 cut(s) 17, 585
TatI WGTACW 1 cut(s) 111
TauI GCSGC 1 cut(s) 204
Tru1I TTAA 2 cut(s) 6, 561
Tru9I TTAA 2 cut(s) 6, 561
TscAI CASTG 1 cut(s) 528
TseI GCWGC 5 cut(s) 55, 147, 403, 448, 676
TspDTI ATGAA 1 cut(s) 512
TspRI CASTG 1 cut(s) 528
Tth111I GACNNNGTC 1 cut(s) 430
VneI GTGCAC 1 cut(s) 361
VpaK11BI GGWCC 3 cut(s) 159, 397, 408
XapI RAATTY 1 cut(s) 585
XmiI GTMKAC 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.