AT5G08050

Protein of unknown function (DUF1118)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013432
Physical Location & Seq
Forward (+)
2578211 .. 2579205
995 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G08050.1

Sequence Viewer

Length: 477 bp
ATGGCGGCTAAACTAATCTGTTCGTCTTTAACAGTGCATTCAATGGCAAATAAGAAGCCATCACCTTCTGCTGCAACAAGAACAATAACCTCAAAGAAGAGCACAGCGACTCCACAGGTGAAACTGCTGACAAGAGTCGAGCAGCTCAAGCTTCTGACCAAAGCCGAGAAAGCAGGACTTTTGTCTTTAGCAGAGAAATCAGGTTTCTCTCTATCGACCATCGAGCGTCTTGGATTGCTGACCAAAGCAGAGGAGTTCGGCGTTTTGTCTGCCGCCACAAACCCGGAAACGCCTGGAACGTTATTCACTTTGAGCCTCGGTTTACTCCTTCTTGGACCGGTTTTTGCATATGTGGTTCCTGAAGATTACACTTGGGAAGTAGTGATTCAGGTTCTTGTGGCTCTACTCTCTGTTCTTGGTGGCTCTGCTGCTTTTGCTGCTTCTGGTTTTGTCTCCAATTTGCAGAAATCTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1118

Protein Analysis

158

Amino Acids

16.58

Weight (kDa)

9.3

Isoelectric Point (pI)

28.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1118 PF06549 45 - 157 2e-46 Protein of unknown function (DUF1118)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08050
fragaria_vesca FvH4_5g13740
malus_domestica MD06G1225900.v1.1 MD14G1212800.v1.1
prunus_persica Prupe.5G206100_v2.0.a1
pyrus_communis pycom06g18030 pycom14g17640
rosa_chinensis RchiOBHm_Chr7g0183201
rosa_laevigata RLG00000005067
rosa_multiflora Rmu_sc0006717.1_g000006 Rmu_ssc0000111.1_g000019
rosa_roxburghii Rroxscaffold_3G00270660
rosa_rugosa Rorug06G0454800
rosa_samantha Rh7AG057200 Rh7BG056900 Rh7CG058000 Rh7DG056800
rosa_wichuraiana Rw7G004670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 273
AclI AACGTT 1 cut(s) 299
AcuI CTGAAG 1 cut(s) 381
AgeI ACCGGT 1 cut(s) 337
AgsI TTSAA 1 cut(s) 42
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 2 cut(s) 145, 151
AluI AGCT 2 cut(s) 145, 151
Alw21I GWGCWC 1 cut(s) 104
Alw26I GTCTC 1 cut(s) 457
ApeKI GCWGC 4 cut(s) 71, 142, 428, 437
AsiGI ACCGGT 1 cut(s) 337
AspS9I GGNCC 1 cut(s) 335
AsuC2I CCSGG 1 cut(s) 284
AsuHPI GGTGA 2 cut(s) 54, 130
AvaII GGWCC 1 cut(s) 335
Bbv12I GWGCWC 1 cut(s) 104
BbvI GCAGC 4 cut(s) 58, 154, 415, 424
BccI CCATC 2 cut(s) 67, 227
BciT130I CCWGG 1 cut(s) 294
BcnI CCSGG 1 cut(s) 284
BcoDI GTCTC 1 cut(s) 457
BisI GCNGC 6 cut(s) 6, 72, 143, 273, 429, 438
BlsI GCNGC 6 cut(s) 7, 73, 144, 274, 430, 439
Bme1390I CCNGG 2 cut(s) 284, 294
Bme18I GGWCC 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 335
BmiI GGNNCC 1 cut(s) 357
BmrFI CCNGG 2 cut(s) 284, 294
BoxI GACNNNNGTC 2 cut(s) 134, 181
BpuEI CTTGAG 1 cut(s) 131
BpuMI CCSGG 1 cut(s) 284
BsaJI CCNNGG 1 cut(s) 316
BsaWI WCCGGW 1 cut(s) 337
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bse118I RCCGGY 1 cut(s) 337
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 316
BseRI GAGGAG 1 cut(s) 266
BseXI GCAGC 4 cut(s) 58, 154, 415, 424
BshTI ACCGGT 1 cut(s) 337
BsiHKAI GWGCWC 1 cut(s) 104
BsiSI CCGG 2 cut(s) 284, 338
BsmAI GTCTC 1 cut(s) 457
BsmI GAATGC 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 104
BspACI CCGC 2 cut(s) 5, 273
BspLI GGNNCC 1 cut(s) 357
BspQI GCTCTTC 1 cut(s) 92
BsrFI RCCGGY 1 cut(s) 337
BssAI RCCGGY 1 cut(s) 337
BssECI CCNNGG 1 cut(s) 316
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 1 cut(s) 34
Bst6I CTCTTC 1 cut(s) 92
BstMAI GTCTC 1 cut(s) 457
BstMWI GCNNNNNNNGC 4 cut(s) 148, 170, 434, 437
BstNI CCWGG 1 cut(s) 294
BstPAI GACNNNNGTC 2 cut(s) 134, 181
BstSCI CCNGG 2 cut(s) 282, 292
BstV1I GCAGC 4 cut(s) 58, 154, 415, 424
BtsIMutI CAGTG 1 cut(s) 39
Cfr10I RCCGGY 1 cut(s) 337
Cfr13I GGNCC 1 cut(s) 335
CseI GACGC 1 cut(s) 215
CspAI ACCGGT 1 cut(s) 337
CviJI RGCY 8 cut(s) 8, 58, 145, 151, 164, 315, 401, 423
CviKI_1 RGCY 8 cut(s) 8, 58, 145, 151, 164, 315, 401, 423
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Eco47I GGWCC 1 cut(s) 335
Eco57I CTGAAG 1 cut(s) 381
EcoRII CCWGG 1 cut(s) 292
FaiI YATR 2 cut(s) 349, 351
FalI AAGNNNNNCTT 2 cut(s) 162, 194
FauNDI CATATG 1 cut(s) 349
Fnu4HI GCNGC 6 cut(s) 6, 72, 143, 273, 429, 438
Fsp4HI GCNGC 6 cut(s) 6, 72, 143, 273, 429, 438
GluI GCNGC 6 cut(s) 6, 72, 143, 273, 429, 438
HapII CCGG 2 cut(s) 284, 338
HgaI GACGC 1 cut(s) 215
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 3 cut(s) 109, 135, 385
HpaII CCGG 2 cut(s) 284, 338
HphI GGTGA 2 cut(s) 54, 130
Hpy166II GTNNAC 1 cut(s) 323
Hpy188I TCNGA 2 cut(s) 156, 472
Hpy188III TCNNGA 1 cut(s) 359
Hpy8I GTNNAC 1 cut(s) 323
HpyAV CCTTC 2 cut(s) 75, 338
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4IV ACGT 1 cut(s) 299
HpyCH4V TGCA 4 cut(s) 37, 74, 347, 463
HpyF10VI GCNNNNNNNGC 4 cut(s) 148, 170, 434, 437
HpySE526I ACGT 1 cut(s) 299
LguI GCTCTTC 1 cut(s) 92
Lsp1109I GCAGC 4 cut(s) 58, 154, 415, 424
MaeII ACGT 1 cut(s) 299
MboII GAAGA 2 cut(s) 109, 374
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 1 cut(s) 457
MlyI GAGTC 2 cut(s) 103, 144
MnlI CCTC 3 cut(s) 100, 244, 326
MseI TTAA 1 cut(s) 29
MspI CCGG 2 cut(s) 284, 338
MspR9I CCNGG 2 cut(s) 284, 294
Mva1269I GAATGC 1 cut(s) 37
MvaI CCWGG 1 cut(s) 294
MwoI GCNNNNNNNGC 4 cut(s) 148, 170, 434, 437
NciI CCSGG 1 cut(s) 284
NdeI CATATG 1 cut(s) 349
NlaIV GGNNCC 1 cut(s) 357
NmeAIII GCCGAG 1 cut(s) 190
PciSI GCTCTTC 1 cut(s) 92
PcsI WCGNNNNNNNCGW 1 cut(s) 296
PctI GAATGC 1 cut(s) 37
PfeI GAWTC 1 cut(s) 385
PinAI ACCGGT 1 cut(s) 337
PkrI GCNGC 6 cut(s) 7, 73, 144, 274, 430, 439
PleI GAGTC 2 cut(s) 103, 143
PpsI GAGTC 2 cut(s) 103, 143
PshAI GACNNNNGTC 2 cut(s) 134, 181
Psp1406I AACGTT 1 cut(s) 299
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 357
PspPI GGNCC 1 cut(s) 335
SapI GCTCTTC 1 cut(s) 92
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 6 cut(s) 6, 72, 143, 273, 429, 438
Sau96I GGNCC 1 cut(s) 335
SchI GAGTC 2 cut(s) 103, 144
ScrFI CCNGG 2 cut(s) 284, 294
SduI GDGCHC 1 cut(s) 104
SetI ASST 8 cut(s) 67, 92, 120, 147, 153, 205, 302, 393
SinI GGWCC 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 1 cut(s) 457
SsiI CCGC 2 cut(s) 5, 273
StyD4I CCNGG 2 cut(s) 282, 292
TaaI ACNGT 1 cut(s) 34
TaiI ACGT 1 cut(s) 302
TaqI TCGA 3 cut(s) 138, 215, 222
TasI AATT 1 cut(s) 457
TauI GCSGC 2 cut(s) 8, 275
TfiI GAWTC 1 cut(s) 385
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 1 cut(s) 39
TseI GCWGC 4 cut(s) 71, 142, 428, 437
TspRI CASTG 1 cut(s) 39
VpaK11BI GGWCC 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.