Prupe.5G206100_v2.0.a1

Protein of unknown function (DUF1118)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0013432
Physical Location & Seq
Forward (+)
16462701 .. 16463801
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G206100.1

Sequence Viewer

Length: 531 bp
ATGGAGGCCAAAGCATTTTGTAGCAGCGTGAGAGGTGCGCCATTGGGAGGCAGAAGAGAGAATTATGCTTCTTCTTTCTCACCCCTTCTCATCCAATCCATGGCTACCCAGAAGCCCATTCCTTCTGTTAACAAAACAGCTAGCTCCAAGAAGAATTCAACTAAACCACCAGTTAAGCTACTAACAAGGGTGGAGCAACTGAAGCTACTGACCAAAGCAGAGAAAGCCGGCCTGCTATCGGCGGCAGAGAAGTCCGGGCTCTCGCTGTCGAGCATAGAGAAACTGGGTCTGCTCTCCAAGGCGGAGGAATTCGGAGTTCTATCGGCAGCCACTGACCCGGGAACTCCGGGGGCATTGTTCACTCTTAGCTTAGTATTGCTGCTTTTGGGTCCATTTGTAGTCTATCTTGTGCCTGAGGATTATCCTTTGGAGATAGGGGTACAAGCTTTTGTTGCTTTGCTTTCAGTGGTGGGTGGTTCTGCAGCTTTTGCTGCTTCAAATTTTGTATCCAACTTGCAGAAGTCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1118

Protein Analysis

177

Amino Acids

18.34

Weight (kDa)

9.52

Isoelectric Point (pI)

38.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08050
fragaria_vesca FvH4_5g13740
malus_domestica MD06G1225900.v1.1 MD14G1212800.v1.1
prunus_persica Prupe.5G206100_v2.0.a1
pyrus_communis pycom06g18030 pycom14g17640
rosa_chinensis RchiOBHm_Chr7g0183201
rosa_laevigata RLG00000005067
rosa_multiflora Rmu_sc0006717.1_g000006 Rmu_ssc0000111.1_g000019
rosa_roxburghii Rroxscaffold_3G00270660
rosa_rugosa Rorug06G0454800
rosa_samantha Rh7AG057200 Rh7BG056900 Rh7CG058000 Rh7DG056800
rosa_wichuraiana Rw7G004670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 100
AciI CCGC 2 cut(s) 242, 302
AcsI RAATTY 3 cut(s) 154, 308, 499
AcuI CTGAAG 1 cut(s) 221
AfaI GTAC 1 cut(s) 441
AfiI CCNNNNNNNGG 3 cut(s) 47, 100, 238
AgsI TTSAA 2 cut(s) 159, 498
AluBI AGCT 7 cut(s) 140, 144, 178, 205, 369, 446, 485
AluI AGCT 7 cut(s) 140, 144, 178, 205, 369, 446, 485
AlwNI CAGNNNCTG 1 cut(s) 332
Ama87I CYCGRG 1 cut(s) 337
AoxI GGCC 2 cut(s) 6, 229
ApeKI GCWGC 5 cut(s) 24, 326, 379, 482, 491
ApoI RAATTY 3 cut(s) 154, 308, 499
AspLEI GCGC 1 cut(s) 40
AspS9I GGNCC 1 cut(s) 389
AsuC2I CCSGG 4 cut(s) 256, 338, 339, 348
AsuHPI GGTGA 1 cut(s) 72
AsuNHI GCTAGC 1 cut(s) 140
AvaI CYCGRG 1 cut(s) 337
AvaII GGWCC 1 cut(s) 389
AxyI CCTNAGG 1 cut(s) 414
BanII GRGCYC 1 cut(s) 261
BbvI GCAGC 5 cut(s) 36, 338, 366, 478, 494
BciVI GTATCC 1 cut(s) 517
BcnI CCSGG 4 cut(s) 256, 338, 339, 348
BfaI CTAG 1 cut(s) 141
BfmI CTRYAG 1 cut(s) 480
BfuI GTATCC 1 cut(s) 517
BisI GCNGC 6 cut(s) 25, 243, 327, 380, 483, 492
BlsI GCNGC 6 cut(s) 26, 244, 328, 381, 484, 493
Bme1390I CCNGG 4 cut(s) 256, 338, 339, 348
Bme18I GGWCC 1 cut(s) 389
BmeT110I CYCGRG 1 cut(s) 337
BmgT120I GGNCC 1 cut(s) 389
BmiI GGNNCC 1 cut(s) 390
BmrFI CCNGG 4 cut(s) 256, 338, 339, 348
BmrI ACTGGG 1 cut(s) 293
BmtI GCTAGC 1 cut(s) 144
BmuI ACTGGG 1 cut(s) 293
BpuMI CCSGG 4 cut(s) 256, 338, 339, 348
BsaJI CCNNGG 4 cut(s) 99, 297, 337, 347
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 100, 238
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 2 cut(s) 170, 288
Bse21I CCTNAGG 1 cut(s) 414
BseDI CCNNGG 4 cut(s) 99, 297, 337, 347
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 3 cut(s) 47, 100, 238
BseMII CTCAG 1 cut(s) 405
BseNI ACTGG 2 cut(s) 170, 288
BseXI GCAGC 5 cut(s) 36, 338, 366, 478, 494
BshFI GGCC 2 cut(s) 8, 231
BsiHKCI CYCGRG 1 cut(s) 337
BsiSI CCGG 4 cut(s) 228, 255, 338, 347
BslI CCNNNNNNNGG 3 cut(s) 47, 100, 238
BsnI GGCC 2 cut(s) 8, 231
BsoBI CYCGRG 1 cut(s) 337
Bsp1286I GDGCHC 1 cut(s) 261
Bsp19I CCATGG 1 cut(s) 99
BspACI CCGC 2 cut(s) 242, 302
BspANI GGCC 2 cut(s) 8, 231
BspCNI CTCAG 1 cut(s) 406
BspLI GGNNCC 1 cut(s) 390
BspMAI CTGCAG 1 cut(s) 484
BspOI GCTAGC 1 cut(s) 144
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 2 cut(s) 170, 288
BssAI RCCGGY 1 cut(s) 227
BssECI CCNNGG 4 cut(s) 99, 297, 337, 347
BssT1I CCWWGG 2 cut(s) 99, 297
Bst6I CTCTTC 1 cut(s) 49
BstAPI GCANNNNNTGC 1 cut(s) 488
BstC8I GCNNGC 3 cut(s) 142, 229, 233
BstDEI CTNAG 3 cut(s) 365, 370, 414
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 1 cut(s) 90
BstHHI GCGC 1 cut(s) 40
BstMWI GCNNNNNNNGC 5 cut(s) 202, 224, 452, 488, 491
BstSCI CCNGG 4 cut(s) 254, 336, 337, 346
BstSFI CTRYAG 1 cut(s) 480
BstV1I GCAGC 5 cut(s) 36, 338, 366, 478, 494
Bsu36I CCTNAGG 1 cut(s) 414
BsuI GTATCC 1 cut(s) 517
BsuRI GGCC 2 cut(s) 8, 231
BtgI CCRYGG 1 cut(s) 99
BtsCI GGATG 1 cut(s) 90
BtsIMutI CAGTG 2 cut(s) 330, 471
Cac8I GCNNGC 3 cut(s) 142, 229, 233
CaiI CAGNNNCTG 1 cut(s) 332
CfoI GCGC 1 cut(s) 40
Cfr10I RCCGGY 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 389
Cfr9I CCCGGG 1 cut(s) 337
Csp6I GTAC 1 cut(s) 440
CviAII CATG 1 cut(s) 100
CviQI GTAC 1 cut(s) 440
DdeI CTNAG 3 cut(s) 365, 370, 414
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
EciI GGCGGA 1 cut(s) 317
Eco130I CCWWGG 2 cut(s) 99, 297
Eco24I GRGCYC 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 389
Eco57I CTGAAG 1 cut(s) 221
Eco81I CCTNAGG 1 cut(s) 414
Eco88I CYCGRG 1 cut(s) 337
EcoRI GAATTC 2 cut(s) 154, 308
EcoT14I CCWWGG 2 cut(s) 99, 297
EcoT38I GRGCYC 1 cut(s) 261
ErhI CCWWGG 2 cut(s) 99, 297
FaeI CATG 1 cut(s) 103
FaiI YATR 3 cut(s) 66, 101, 275
FatI CATG 1 cut(s) 99
Fnu4HI GCNGC 6 cut(s) 25, 243, 327, 380, 483, 492
FokI GGATG 1 cut(s) 77
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 6 cut(s) 25, 243, 327, 380, 483, 492
FspBI CTAG 1 cut(s) 141
GlaI GCGC 1 cut(s) 39
GluI GCNGC 6 cut(s) 25, 243, 327, 380, 483, 492
HaeIII GGCC 2 cut(s) 8, 231
HapII CCGG 4 cut(s) 228, 255, 338, 347
HhaI GCGC 1 cut(s) 40
Hin1II CATG 1 cut(s) 103
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HindIII AAGCTT 1 cut(s) 444
HpaI GTTAAC 1 cut(s) 130
HpaII CCGG 4 cut(s) 228, 255, 338, 347
HphI GGTGA 1 cut(s) 72
Hpy166II GTNNAC 2 cut(s) 130, 360
Hpy188I TCNGA 1 cut(s) 314
Hpy8I GTNNAC 2 cut(s) 130, 360
HpyAV CCTTC 2 cut(s) 95, 132
HpyCH4V TGCA 2 cut(s) 482, 517
HpyF10VI GCNNNNNNNGC 5 cut(s) 202, 224, 452, 488, 491
HpyF3I CTNAG 3 cut(s) 365, 370, 414
Hsp92II CATG 1 cut(s) 103
HspAI GCGC 1 cut(s) 38
KroI GCCGGC 1 cut(s) 227
KroNI GCCGGC 1 cut(s) 229
KspAI GTTAAC 1 cut(s) 130
LmnI GCTCC 2 cut(s) 149, 193
LpnPI CCDG 9 cut(s) 122, 183, 241, 245, 268, 269, 351, 360, 426
Lsp1109I GCAGC 5 cut(s) 36, 338, 366, 478, 494
MaeI CTAG 1 cut(s) 141
MboII GAAGA 3 cut(s) 63, 66, 163
MhlI GDGCHC 1 cut(s) 261
MluCI AATT 4 cut(s) 61, 154, 308, 499
MnlI CCTC 4 cut(s) 26, 41, 298, 409
MroNI GCCGGC 1 cut(s) 227
MseI TTAA 2 cut(s) 129, 174
MspI CCGG 4 cut(s) 228, 255, 338, 347
MspR9I CCNGG 4 cut(s) 256, 338, 339, 348
MwoI GCNNNNNNNGC 5 cut(s) 202, 224, 452, 488, 491
NaeI GCCGGC 1 cut(s) 229
NciI CCSGG 4 cut(s) 256, 338, 339, 348
NcoI CCATGG 1 cut(s) 99
NgoMIV GCCGGC 1 cut(s) 227
NheI GCTAGC 1 cut(s) 140
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 1 cut(s) 390
PdiI GCCGGC 1 cut(s) 229
PflMI CCANNNNNTGG 1 cut(s) 100
PkrI GCNGC 6 cut(s) 26, 244, 328, 381, 484, 493
PspN4I GGNNCC 1 cut(s) 390
PspPI GGNCC 1 cut(s) 389
PstI CTGCAG 1 cut(s) 484
PstNI CAGNNNCTG 1 cut(s) 332
RsaI GTAC 1 cut(s) 441
RsaNI GTAC 1 cut(s) 440
SaqAI TTAA 2 cut(s) 129, 174
SatI GCNGC 6 cut(s) 25, 243, 327, 380, 483, 492
Sau96I GGNCC 1 cut(s) 389
ScrFI CCNGG 4 cut(s) 256, 338, 339, 348
SduI GDGCHC 1 cut(s) 261
SetI ASST 8 cut(s) 37, 142, 146, 180, 207, 371, 448, 487
SfcI CTRYAG 1 cut(s) 480
SinI GGWCC 1 cut(s) 389
SmaI CCCGGG 1 cut(s) 339
Sse9I AATT 4 cut(s) 61, 154, 308, 499
SsiI CCGC 2 cut(s) 242, 302
SspMI CTAG 1 cut(s) 141
StyD4I CCNGG 4 cut(s) 254, 336, 337, 346
StyI CCWWGG 2 cut(s) 99, 297
TaqI TCGA 1 cut(s) 269
TasI AATT 4 cut(s) 61, 154, 308, 499
TauI GCSGC 1 cut(s) 245
Tru1I TTAA 2 cut(s) 129, 174
Tru9I TTAA 2 cut(s) 129, 174
TscAI CASTG 2 cut(s) 337, 471
TseI GCWGC 5 cut(s) 24, 326, 379, 482, 491
TspMI CCCGGG 1 cut(s) 337
TspRI CASTG 2 cut(s) 337, 471
Van91I CCANNNNNTGG 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 389
XapI RAATTY 3 cut(s) 154, 308, 499
XmaI CCCGGG 1 cut(s) 337
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.