Rroxscaffold_3G00270660

Protein of unknown function (DUF1118)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0013432
Physical Location & Seq
Reverse (-)
63235130 .. 63237001
1872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00270660.1

Sequence Viewer

Length: 594 bp
ATGGAGGGCAAAGCATTTTTGGGCAGTAGAGGAGTGCTGCCGTTGGTGTATACTTCTCCACAGAGACCCAAATCCATGGCTGCAGCGAACAAAACTGTTAGCTCCAAAAAGGTCCTCTTGGTCGCTCATATGAGAAATTTCGCTAAACTATGGAGTTCCCTACTCCTTAAGATTGTTGCCTTTCCTATAGCGTTACTACCGTGGTTAAATTTTGGATTGAACAATTCGACTCAAGTGAAGCTACTAACAAGGGTGGAGCAACTGAAGCTGCTGACCAAGGCCGAGAAAGCTGGTCTGCTATCGGCGGCAGAGAAGTCCGGCCTCTCACTGTCGGCAATAGAGAAGCTCGGTCTGCTGTCAAAGGCTGAAGAATTTGGAGTCCTATCGGCGGCCACTGACCCTGGAACTCCGGGGGCATTGCTGACTCTGAGCTTCGGACTACTGCTTTTGGGTCCATTGTCTGTTTTTCTTGTGCCTGAGGATTACCCTTGGGAGGTTGTTGTACAAGCTGTGGTTGCTGCTGTTTCCGTGGTGGGTGGTTCTGCGGCTTTTGGTGCATCTAATTTTGTATCCAACTTGCAGAAATCAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1118

Protein Analysis

197

Amino Acids

20.75

Weight (kDa)

9.84

Isoelectric Point (pI)

23.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1118 PF06549 84 - 196 1.2e-46 Protein of unknown function (DUF1118)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08050
fragaria_vesca FvH4_5g13740
malus_domestica MD06G1225900.v1.1 MD14G1212800.v1.1
prunus_persica Prupe.5G206100_v2.0.a1
pyrus_communis pycom06g18030 pycom14g17640
rosa_chinensis RchiOBHm_Chr7g0183201
rosa_laevigata RLG00000005067
rosa_multiflora Rmu_sc0006717.1_g000006 Rmu_ssc0000111.1_g000019
rosa_roxburghii Rroxscaffold_3G00270660
rosa_rugosa Rorug06G0454800
rosa_samantha Rh7AG057200 Rh7BG056900 Rh7CG058000 Rh7DG056800
rosa_wichuraiana Rw7G004670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 50
AciI CCGC 3 cut(s) 305, 389, 545
AcoI YGGCCR 1 cut(s) 390
AcsI RAATTY 3 cut(s) 136, 208, 371
AcuI CTGAAG 2 cut(s) 284, 387
AfaI GTAC 1 cut(s) 504
AfiI CCNNNNNNNGG 2 cut(s) 388, 493
AflII CTTAAG 1 cut(s) 167
AgsI TTSAA 1 cut(s) 220
AjnI CCWGG 1 cut(s) 400
AluBI AGCT 7 cut(s) 102, 241, 268, 290, 346, 432, 509
AluI AGCT 7 cut(s) 102, 241, 268, 290, 346, 432, 509
Alw26I GTCTC 1 cut(s) 58
AoxI GGCC 3 cut(s) 279, 319, 390
ApeKI GCWGC 5 cut(s) 37, 80, 83, 268, 518
ApoI RAATTY 3 cut(s) 136, 208, 371
AspS9I GGNCC 2 cut(s) 112, 452
AsuC2I CCSGG 1 cut(s) 411
AvaII GGWCC 2 cut(s) 112, 452
AxyI CCTNAGG 1 cut(s) 477
BbvI GCAGC 5 cut(s) 24, 67, 95, 255, 505
BceAI ACGGC 1 cut(s) 25
BciT130I CCWGG 1 cut(s) 402
BciVI GTATCC 1 cut(s) 580
BcnI CCSGG 1 cut(s) 411
BcoDI GTCTC 1 cut(s) 58
BfmI CTRYAG 2 cut(s) 81, 186
BfrI CTTAAG 1 cut(s) 167
BfuI GTATCC 1 cut(s) 580
BisI GCNGC 8 cut(s) 38, 81, 84, 269, 306, 390, 519, 546
BlsI GCNGC 8 cut(s) 39, 82, 85, 270, 307, 391, 520, 547
Bme1390I CCNGG 2 cut(s) 402, 411
Bme18I GGWCC 2 cut(s) 112, 452
BmgT120I GGNCC 2 cut(s) 112, 452
BmiI GGNNCC 1 cut(s) 453
BmrFI CCNGG 2 cut(s) 402, 411
BmsI GCATC 1 cut(s) 566
BpuEI CTTGAG 1 cut(s) 216
BpuMI CCSGG 1 cut(s) 411
BsaI GGTCTC 1 cut(s) 58
BsaJI CCNNGG 7 cut(s) 75, 200, 276, 400, 410, 488, 528
Bsc4I CCNNNNNNNGG 2 cut(s) 388, 493
Bse21I CCTNAGG 1 cut(s) 477
Bse3DI GCAATG 1 cut(s) 416
BseBI CCWGG 1 cut(s) 402
BseDI CCNNGG 7 cut(s) 75, 200, 276, 400, 410, 488, 528
BseLI CCNNNNNNNGG 2 cut(s) 388, 493
BseMI GCAATG 1 cut(s) 416
BseMII CTCAG 2 cut(s) 419, 468
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 5 cut(s) 24, 67, 95, 255, 505
BshFI GGCC 3 cut(s) 281, 321, 392
BsiSI CCGG 2 cut(s) 318, 410
BslI CCNNNNNNNGG 2 cut(s) 388, 493
BsmAI GTCTC 1 cut(s) 58
BsnI GGCC 3 cut(s) 281, 321, 392
Bso31I GGTCTC 1 cut(s) 58
Bsp1407I TGTACA 1 cut(s) 502
Bsp19I CCATGG 1 cut(s) 75
BspACI CCGC 3 cut(s) 305, 389, 545
BspANI GGCC 3 cut(s) 281, 321, 392
BspCNI CTCAG 2 cut(s) 420, 469
BspLI GGNNCC 1 cut(s) 453
BspMAI CTGCAG 1 cut(s) 85
BspTI CTTAAG 1 cut(s) 167
BspTNI GGTCTC 1 cut(s) 58
BsrDI GCAATG 1 cut(s) 416
BsrGI TGTACA 1 cut(s) 502
BssECI CCNNGG 7 cut(s) 75, 200, 276, 400, 410, 488, 528
BssNAI GTATAC 1 cut(s) 51
BssT1I CCWWGG 3 cut(s) 75, 276, 488
Bst1107I GTATAC 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 402
Bst4CI ACNGT 3 cut(s) 97, 201, 330
BstAFI CTTAAG 1 cut(s) 167
BstAUI TGTACA 1 cut(s) 502
BstDEI CTNAG 2 cut(s) 428, 477
BstDSI CCRYGG 3 cut(s) 75, 200, 528
BstMAI GTCTC 1 cut(s) 58
BstMWI GCNNNNNNNGC 5 cut(s) 265, 287, 352, 515, 554
BstNI CCWGG 1 cut(s) 402
BstSCI CCNGG 2 cut(s) 400, 409
BstSFI CTRYAG 2 cut(s) 81, 186
BstV1I GCAGC 5 cut(s) 24, 67, 95, 255, 505
BstXI CCANNNNNNTGG 1 cut(s) 76
BstZ17I GTATAC 1 cut(s) 51
Bsu36I CCTNAGG 1 cut(s) 477
BsuI GTATCC 1 cut(s) 580
BsuRI GGCC 3 cut(s) 281, 321, 392
BtgI CCRYGG 3 cut(s) 75, 200, 528
BtsIMutI CAGTG 2 cut(s) 326, 393
Cfr13I GGNCC 2 cut(s) 112, 452
Csp6I GTAC 1 cut(s) 503
CviAII CATG 1 cut(s) 76
CviQI GTAC 1 cut(s) 503
DdeI CTNAG 2 cut(s) 428, 477
EaeI YGGCCR 1 cut(s) 390
Eco130I CCWWGG 3 cut(s) 75, 276, 488
Eco31I GGTCTC 1 cut(s) 58
Eco47I GGWCC 2 cut(s) 112, 452
Eco57I CTGAAG 2 cut(s) 284, 387
Eco81I CCTNAGG 1 cut(s) 477
EcoO109I RGGNCCY 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 400
EcoT14I CCWWGG 3 cut(s) 75, 276, 488
ErhI CCWWGG 3 cut(s) 75, 276, 488
FaeI CATG 1 cut(s) 79
FaiI YATR 6 cut(s) 51, 77, 129, 131, 151, 188
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FatI CATG 1 cut(s) 75
FauNDI CATATG 1 cut(s) 129
FblI GTMKAC 1 cut(s) 50
Fnu4HI GCNGC 8 cut(s) 38, 81, 84, 269, 306, 390, 519, 546
Fsp4HI GCNGC 8 cut(s) 38, 81, 84, 269, 306, 390, 519, 546
GluI GCNGC 8 cut(s) 38, 81, 84, 269, 306, 390, 519, 546
HaeIII GGCC 3 cut(s) 281, 321, 392
HapII CCGG 2 cut(s) 318, 410
Hin1II CATG 1 cut(s) 79
HinfI GANTC 3 cut(s) 229, 378, 424
HpaII CCGG 2 cut(s) 318, 410
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 2 cut(s) 429, 437
Hpy8I GTNNAC 1 cut(s) 51
HpyCH4III ACNGT 3 cut(s) 97, 201, 330
HpyCH4V TGCA 3 cut(s) 83, 557, 580
HpyF10VI GCNNNNNNNGC 5 cut(s) 265, 287, 352, 515, 554
HpyF3I CTNAG 2 cut(s) 428, 477
Hsp92II CATG 1 cut(s) 79
LmnI GCTCC 2 cut(s) 107, 256
LpnPI CCDG 6 cut(s) 276, 331, 387, 414, 423, 489
Lsp1109I GCAGC 5 cut(s) 24, 67, 95, 255, 505
LweI GCATC 1 cut(s) 566
MaeIII GTNAC 1 cut(s) 192
MboII GAAGA 1 cut(s) 380
MluCI AATT 6 cut(s) 136, 208, 223, 371, 562, 589
MlyI GAGTC 3 cut(s) 223, 387, 418
MnlI CCTC 5 cut(s) 23, 125, 332, 472, 487
MseI TTAA 2 cut(s) 168, 206
MspCI CTTAAG 1 cut(s) 167
MspI CCGG 2 cut(s) 318, 410
MspR9I CCNGG 2 cut(s) 402, 411
MvaI CCWGG 1 cut(s) 402
MwoI GCNNNNNNNGC 5 cut(s) 265, 287, 352, 515, 554
NciI CCSGG 1 cut(s) 411
NcoI CCATGG 1 cut(s) 75
NdeI CATATG 1 cut(s) 129
NlaIII CATG 1 cut(s) 79
NlaIV GGNNCC 1 cut(s) 453
NmeAIII GCCGAG 1 cut(s) 307
PkrI GCNGC 8 cut(s) 39, 82, 85, 270, 307, 391, 520, 547
PleI GAGTC 3 cut(s) 223, 386, 418
PpsI GAGTC 3 cut(s) 223, 386, 418
PpuMI RGGWCCY 1 cut(s) 112
Psp5II RGGWCCY 1 cut(s) 112
Psp6I CCWGG 1 cut(s) 400
PspGI CCWGG 1 cut(s) 400
PspN4I GGNNCC 1 cut(s) 453
PspPI GGNCC 2 cut(s) 112, 452
PspPPI RGGWCCY 1 cut(s) 112
PstI CTGCAG 1 cut(s) 85
RsaI GTAC 1 cut(s) 504
RsaNI GTAC 1 cut(s) 503
SaqAI TTAA 2 cut(s) 168, 206
SatI GCNGC 8 cut(s) 38, 81, 84, 269, 306, 390, 519, 546
Sau96I GGNCC 2 cut(s) 112, 452
SchI GAGTC 3 cut(s) 223, 387, 418
ScrFI CCNGG 2 cut(s) 402, 411
SetI ASST 9 cut(s) 104, 114, 243, 270, 292, 348, 434, 498, 511
SfaNI GCATC 1 cut(s) 566
SfcI CTRYAG 2 cut(s) 81, 186
SinI GGWCC 2 cut(s) 112, 452
SmlI CTYRAG 2 cut(s) 167, 231
SmoI CTYRAG 2 cut(s) 167, 231
Sse9I AATT 6 cut(s) 136, 208, 223, 371, 562, 589
SsiI CCGC 3 cut(s) 305, 389, 545
StyD4I CCNGG 2 cut(s) 400, 409
StyI CCWWGG 3 cut(s) 75, 276, 488
TaaI ACNGT 3 cut(s) 97, 201, 330
TaqI TCGA 1 cut(s) 227
TaqII GACCGA 1 cut(s) 338
TasI AATT 6 cut(s) 136, 208, 223, 371, 562, 589
TatI WGTACW 1 cut(s) 502
TauI GCSGC 3 cut(s) 308, 392, 548
Tru1I TTAA 2 cut(s) 168, 206
Tru9I TTAA 2 cut(s) 168, 206
TscAI CASTG 2 cut(s) 333, 400
TseI GCWGC 5 cut(s) 37, 80, 83, 268, 518
TspGWI ACGGA 1 cut(s) 517
TspRI CASTG 2 cut(s) 333, 400
Vha464I CTTAAG 1 cut(s) 167
VpaK11BI GGWCC 2 cut(s) 112, 452
XapI RAATTY 3 cut(s) 136, 208, 371
XmiI GTMKAC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.