MD14G1212800.v1.1

Protein of unknown function (DUF1118)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0013432
Physical Location & Seq
Forward (+)
29748950 .. 29750053
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1212800.v1.1.491

Sequence Viewer

Length: 540 bp
ATGGAGGCCAGAGCATTTTACAGCTGCAGCGCCGGCGGTGTGCCTTTCGCTTTCAGAGCACCAGCAGCAGCAAAAGGAGGCAACTTTGCTTCCTCCTCGCCTCTCCTCATCCAATCCATGGCTACCACGAAACCCATTCCTTCAGCTACCAACACAGTCAGCTCCAAGAAGAATTCATCTGTGAAGCTGCTAACAAGGGTGGAGCAACTGAAGCTGCTGACCAAAGCAGAGAAAGCCGGCCTGCTGTCCGCGGCAGAGAAGTCCGGGCTCTCATTGTCGACGATAGAGAAGCTAGGGTTGCTCTCCAAGGCGGAGGAATTCGGAATCCTTTCTGCAGCCACCGACCCGGGAACTCCCGGGGCATTGTTGAGTCTAGGCTTAGGACTGCTGGTTTTGGGTCCATTTGTTGTTTATCTTGTGCCTGAGGATTCTCCTTTGGAGATAGGGCTACAAGCTGTTGTTGCTTTGGCTGCAATAGTGGGTGGTTCTGCTGCTTTTGCTGCATCAAATCTTGTATCCAGTTTGCAGAAATCCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1118

Protein Analysis

180

Amino Acids

18.06

Weight (kDa)

9.3

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1118 PF06549 66 - 178 1.6e-45 Protein of unknown function (DUF1118)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08050
fragaria_vesca FvH4_5g13740
malus_domestica MD06G1225900.v1.1 MD14G1212800.v1.1
prunus_persica Prupe.5G206100_v2.0.a1
pyrus_communis pycom06g18030 pycom14g17640
rosa_chinensis RchiOBHm_Chr7g0183201
rosa_laevigata RLG00000005067
rosa_multiflora Rmu_sc0006717.1_g000006 Rmu_ssc0000111.1_g000019
rosa_roxburghii Rroxscaffold_3G00270660
rosa_rugosa Rorug06G0454800
rosa_samantha Rh7AG057200 Rh7BG056900 Rh7CG058000 Rh7DG056800
rosa_wichuraiana Rw7G004670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 118
AccI GTMKAC 1 cut(s) 278
AccII CGCG 1 cut(s) 251
AciI CCGC 4 cut(s) 36, 249, 251, 311
AcsI RAATTY 2 cut(s) 172, 317
AcuI CTGAAG 2 cut(s) 126, 230
AfiI CCNNNNNNNGG 1 cut(s) 118
AluBI AGCT 7 cut(s) 24, 146, 162, 187, 214, 292, 455
AluI AGCT 7 cut(s) 24, 146, 162, 187, 214, 292, 455
Alw21I GWGCWC 1 cut(s) 61
Ama87I CYCGRG 2 cut(s) 346, 356
AoxI GGCC 2 cut(s) 6, 238
ApoI RAATTY 2 cut(s) 172, 317
Asp700I GAANNNNTTC 1 cut(s) 328
AspLEI GCGC 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 398
AsuC2I CCSGG 5 cut(s) 265, 347, 348, 357, 358
AvaI CYCGRG 2 cut(s) 346, 356
AvaII GGWCC 1 cut(s) 398
AxyI CCTNAGG 1 cut(s) 423
BanII GRGCYC 1 cut(s) 270
Bbv12I GWGCWC 1 cut(s) 61
BciVI GTATCC 1 cut(s) 526
BcnI CCSGG 5 cut(s) 265, 347, 348, 357, 358
BfaI CTAG 2 cut(s) 293, 374
BfmI CTRYAG 2 cut(s) 25, 333
BfoI RGCGCY 1 cut(s) 33
BfuI GTATCC 1 cut(s) 526
Bme1390I CCNGG 5 cut(s) 265, 347, 348, 357, 358
Bme18I GGWCC 1 cut(s) 398
BmeT110I CYCGRG 2 cut(s) 346, 356
BmgT120I GGNCC 1 cut(s) 398
BmiI GGNNCC 1 cut(s) 399
BmrFI CCNGG 5 cut(s) 265, 347, 348, 357, 358
BmsI GCATC 1 cut(s) 512
Bpu10I CCTNAGC 1 cut(s) 379
BpuMI CCSGG 5 cut(s) 265, 347, 348, 357, 358
BsaJI CCNNGG 6 cut(s) 117, 249, 306, 346, 356, 357
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse118I RCCGGY 2 cut(s) 32, 236
Bse1I ACTGG 1 cut(s) 519
Bse21I CCTNAGG 1 cut(s) 423
BseDI CCNNGG 6 cut(s) 117, 249, 306, 346, 356, 357
BseGI GGATG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 118
BseMII CTCAG 1 cut(s) 414
BseNI ACTGG 1 cut(s) 519
BseRI GAGGAG 2 cut(s) 85, 95
Bsh1236I CGCG 1 cut(s) 251
BshFI GGCC 2 cut(s) 8, 240
BsiHKAI GWGCWC 1 cut(s) 61
BsiHKCI CYCGRG 2 cut(s) 346, 356
BsiSI CCGG 5 cut(s) 33, 237, 264, 347, 357
BslI CCNNNNNNNGG 1 cut(s) 118
BsnI GGCC 2 cut(s) 8, 240
BsoBI CYCGRG 2 cut(s) 346, 356
Bsp1286I GDGCHC 2 cut(s) 61, 270
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 4 cut(s) 36, 249, 251, 311
BspANI GGCC 2 cut(s) 8, 240
BspCNI CTCAG 1 cut(s) 415
BspFNI CGCG 1 cut(s) 251
BspLI GGNNCC 1 cut(s) 399
BspMAI CTGCAG 2 cut(s) 29, 337
BsrFI RCCGGY 2 cut(s) 32, 236
BsrI ACTGG 1 cut(s) 519
BssAI RCCGGY 2 cut(s) 32, 236
BssECI CCNNGG 6 cut(s) 117, 249, 306, 346, 356, 357
BssT1I CCWWGG 2 cut(s) 117, 306
Bst4CI ACNGT 1 cut(s) 157
BstC8I GCNNGC 3 cut(s) 34, 238, 242
BstDEI CTNAG 2 cut(s) 379, 423
BstDSI CCRYGG 2 cut(s) 117, 249
BstF5I GGATG 1 cut(s) 108
BstFNI CGCG 1 cut(s) 251
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 1 cut(s) 32
BstSCI CCNGG 5 cut(s) 263, 345, 346, 355, 356
BstSFI CTRYAG 2 cut(s) 25, 333
BstUI CGCG 1 cut(s) 251
Bsu36I CCTNAGG 1 cut(s) 423
BsuI GTATCC 1 cut(s) 526
BsuRI GGCC 2 cut(s) 8, 240
BtgI CCRYGG 2 cut(s) 117, 249
BtsCI GGATG 1 cut(s) 108
Cac8I GCNNGC 3 cut(s) 34, 238, 242
CfoI GCGC 1 cut(s) 32
Cfr10I RCCGGY 2 cut(s) 32, 236
Cfr13I GGNCC 1 cut(s) 398
Cfr42I CCGCGG 1 cut(s) 252
Cfr9I CCCGGG 2 cut(s) 346, 356
CviAII CATG 1 cut(s) 118
DdeI CTNAG 2 cut(s) 379, 423
EciI GGCGGA 1 cut(s) 326
Eco130I CCWWGG 2 cut(s) 117, 306
Eco24I GRGCYC 1 cut(s) 270
Eco47I GGWCC 1 cut(s) 398
Eco57I CTGAAG 2 cut(s) 126, 230
Eco81I CCTNAGG 1 cut(s) 423
Eco88I CYCGRG 2 cut(s) 346, 356
EcoRI GAATTC 2 cut(s) 172, 317
EcoT14I CCWWGG 2 cut(s) 117, 306
EcoT38I GRGCYC 1 cut(s) 270
ErhI CCWWGG 2 cut(s) 117, 306
FaeI CATG 1 cut(s) 121
FaiI YATR 1 cut(s) 119
FatI CATG 1 cut(s) 117
FblI GTMKAC 1 cut(s) 278
FokI GGATG 1 cut(s) 95
FriOI GRGCYC 1 cut(s) 270
FspBI CTAG 2 cut(s) 293, 374
GlaI GCGC 1 cut(s) 31
HaeII RGCGCY 1 cut(s) 33
HaeIII GGCC 2 cut(s) 8, 240
HapII CCGG 5 cut(s) 33, 237, 264, 347, 357
HhaI GCGC 1 cut(s) 32
Hin1II CATG 1 cut(s) 121
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HincII GTYRAC 1 cut(s) 279
HindII GTYRAC 1 cut(s) 279
HinfI GANTC 3 cut(s) 324, 370, 428
HpaII CCGG 5 cut(s) 33, 237, 264, 347, 357
Hpy166II GTNNAC 1 cut(s) 279
Hpy188I TCNGA 2 cut(s) 56, 323
Hpy8I GTNNAC 1 cut(s) 279
Hpy99I CGWCG 1 cut(s) 283
HpyAV CCTTC 1 cut(s) 150
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4V TGCA 5 cut(s) 27, 335, 473, 503, 526
HpyF3I CTNAG 2 cut(s) 379, 423
Hsp92II CATG 1 cut(s) 121
HspAI GCGC 1 cut(s) 30
KroI GCCGGC 2 cut(s) 32, 236
KroNI GCCGGC 2 cut(s) 34, 238
KspI CCGCGG 1 cut(s) 252
LmnI GCTCC 2 cut(s) 167, 202
LweI GCATC 1 cut(s) 512
MaeI CTAG 2 cut(s) 293, 374
MboII GAAGA 1 cut(s) 181
MhlI GDGCHC 2 cut(s) 61, 270
MluCI AATT 2 cut(s) 172, 317
MlyI GAGTC 1 cut(s) 379
MnlI CCTC 7 cut(s) 71, 103, 106, 111, 116, 307, 418
MreI CGCCGGCG 1 cut(s) 32
MroNI GCCGGC 2 cut(s) 32, 236
MroXI GAANNNNTTC 1 cut(s) 328
MspA1I CMGCKG 2 cut(s) 24, 251
MspI CCGG 5 cut(s) 33, 237, 264, 347, 357
MspR9I CCNGG 5 cut(s) 265, 347, 348, 357, 358
MvnI CGCG 1 cut(s) 251
NaeI GCCGGC 2 cut(s) 34, 238
NciI CCSGG 5 cut(s) 265, 347, 348, 357, 358
NcoI CCATGG 1 cut(s) 117
NgoMIV GCCGGC 2 cut(s) 32, 236
NlaIII CATG 1 cut(s) 121
NlaIV GGNNCC 1 cut(s) 399
PdiI GCCGGC 2 cut(s) 34, 238
PdmI GAANNNNTTC 1 cut(s) 328
PfeI GAWTC 2 cut(s) 324, 428
PflMI CCANNNNNTGG 1 cut(s) 118
PleI GAGTC 1 cut(s) 378
PpsI GAGTC 1 cut(s) 378
PspN4I GGNNCC 1 cut(s) 399
PspPI GGNCC 1 cut(s) 398
PstI CTGCAG 2 cut(s) 29, 337
PvuII CAGCTG 1 cut(s) 24
SacII CCGCGG 1 cut(s) 252
SalI GTCGAC 1 cut(s) 277
Sau96I GGNCC 1 cut(s) 398
SchI GAGTC 1 cut(s) 379
ScrFI CCNGG 5 cut(s) 265, 347, 348, 357, 358
SduI GDGCHC 2 cut(s) 61, 270
SetI ASST 7 cut(s) 26, 148, 164, 189, 216, 294, 457
SfaNI GCATC 1 cut(s) 512
SfcI CTRYAG 2 cut(s) 25, 333
Sfr303I CCGCGG 1 cut(s) 252
SgrAI CRCCGGYG 1 cut(s) 32
SgrBI CCGCGG 1 cut(s) 252
SinI GGWCC 1 cut(s) 398
SmaI CCCGGG 2 cut(s) 348, 358
Sse9I AATT 2 cut(s) 172, 317
SsiI CCGC 4 cut(s) 36, 249, 251, 311
SspMI CTAG 2 cut(s) 293, 374
StyD4I CCNGG 5 cut(s) 263, 345, 346, 355, 356
StyI CCWWGG 2 cut(s) 117, 306
TaaI ACNGT 1 cut(s) 157
TaqI TCGA 1 cut(s) 278
TasI AATT 2 cut(s) 172, 317
TauI GCSGC 1 cut(s) 254
TfiI GAWTC 2 cut(s) 324, 428
TspDTI ATGAA 1 cut(s) 165
TspMI CCCGGG 2 cut(s) 346, 356
Van91I CCANNNNNTGG 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 398
XapI RAATTY 2 cut(s) 172, 317
XmaI CCCGGG 2 cut(s) 346, 356
XmiI GTMKAC 1 cut(s) 278
XmnI GAANNNNTTC 1 cut(s) 328
XspI CTAG 2 cut(s) 293, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.