FvH4_5g13740

Protein of unknown function (DUF1118)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013432
Physical Location & Seq
Reverse (-)
7773289 .. 7774249
961 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g13740.t1

Sequence Viewer

Length: 489 bp
ATGGAGGCTAAAGCGTTTTCGGGCAGTAGAGGACTGCTGCCGTTGCTGTACACTTCTCCCCAGAGACCCAAATCCATGCCTGCCCAGACGTCGATCCGCGCAGCCGCCACCAAGAAGAATTCGACACAAGTGAAGCTACTAACAAGGGTGGAGCAACTGAAGCTGCTGACCAAAGCCGAGAAAGCCGGCCTTCTATCGGCGGCAGAGAAGTCCGGCCTCTCACTGTCGGCGATAGAGAAGCTCGGGCTGCTATCAAAGGCAGAAGAATTTGGAGTCCTGTCGGCAGCCACGGACCCTGGAACTCCGGGGGCACTGCTGACTTTGAGCTTCGGACTACTGCTTTTGGGTCCTTTGTCTGTCTTTCTTGTGCCGGAGGATTACCCTTGGGAGGTGGTTGTCCAAGCTGTGGTCGCTGCTGTTTCTGTGGTGGGTGGTTCTGCAGCCTTCGGTGCATCAAATTTTGTATCGAACTTGCAGAAATCAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1118

Protein Analysis

163

Amino Acids

16.77

Weight (kDa)

9.6

Isoelectric Point (pI)

27.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1118 PF06549 49 - 161 6.7e-47 Protein of unknown function (DUF1118)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08050
fragaria_vesca FvH4_5g13740
malus_domestica MD06G1225900.v1.1 MD14G1212800.v1.1
prunus_persica Prupe.5G206100_v2.0.a1
pyrus_communis pycom06g18030 pycom14g17640
rosa_chinensis RchiOBHm_Chr7g0183201
rosa_laevigata RLG00000005067
rosa_multiflora Rmu_sc0006717.1_g000006 Rmu_ssc0000111.1_g000019
rosa_roxburghii Rroxscaffold_3G00270660
rosa_rugosa Rorug06G0454800
rosa_samantha Rh7AG057200 Rh7BG056900 Rh7CG058000 Rh7DG056800
rosa_wichuraiana Rw7G004670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 92
AccB7I CCANNNNNTGG 1 cut(s) 406
AccII CGCG 1 cut(s) 99
AciI CCGC 3 cut(s) 97, 105, 200
AclWI GGATC 1 cut(s) 88
AcsI RAATTY 3 cut(s) 118, 266, 457
AcuI CTGAAG 1 cut(s) 179
AcyI GRCGYC 1 cut(s) 89
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 3 cut(s) 196, 388, 406
AjnI CCWGG 1 cut(s) 295
AluBI AGCT 6 cut(s) 136, 163, 241, 327, 404, 486
AluI AGCT 6 cut(s) 136, 163, 241, 327, 404, 486
Alw26I GTCTC 1 cut(s) 58
AlwI GGATC 1 cut(s) 88
Ama87I CYCGRG 1 cut(s) 242
AoxI GGCC 2 cut(s) 187, 214
ApeKI GCWGC 7 cut(s) 37, 101, 163, 247, 284, 413, 440
ApoI RAATTY 3 cut(s) 118, 266, 457
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 2 cut(s) 292, 347
AsuC2I CCSGG 1 cut(s) 306
AvaI CYCGRG 1 cut(s) 242
AvaII GGWCC 2 cut(s) 292, 347
BaeGI GKGCMC 1 cut(s) 313
BbvI GCAGC 7 cut(s) 24, 113, 150, 234, 296, 400, 452
BceAI ACGGC 1 cut(s) 25
BciT130I CCWGG 1 cut(s) 297
BcnI CCSGG 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 58
BfmI CTRYAG 1 cut(s) 438
BisI GCNGC 9 cut(s) 38, 102, 105, 164, 201, 248, 285, 414, 441
BlsI GCNGC 9 cut(s) 39, 103, 106, 165, 202, 249, 286, 415, 442
Bme1390I CCNGG 2 cut(s) 297, 306
Bme18I GGWCC 2 cut(s) 292, 347
BmeT110I CYCGRG 1 cut(s) 242
BmgT120I GGNCC 2 cut(s) 292, 347
BmiI GGNNCC 2 cut(s) 294, 348
BmrFI CCNGG 2 cut(s) 297, 306
BmsI GCATC 1 cut(s) 461
BpuMI CCSGG 1 cut(s) 306
BsaHI GRCGYC 1 cut(s) 89
BsaI GGTCTC 1 cut(s) 58
BsaJI CCNNGG 4 cut(s) 288, 295, 305, 383
Bsc4I CCNNNNNNNGG 3 cut(s) 196, 388, 406
Bse118I RCCGGY 1 cut(s) 185
BseBI CCWGG 1 cut(s) 297
BseDI CCNNGG 4 cut(s) 288, 295, 305, 383
BseLI CCNNNNNNNGG 3 cut(s) 196, 388, 406
BseSI GKGCMC 1 cut(s) 313
BseXI GCAGC 7 cut(s) 24, 113, 150, 234, 296, 400, 452
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 2 cut(s) 189, 216
BsiHKCI CYCGRG 1 cut(s) 242
BsiSI CCGG 4 cut(s) 186, 213, 305, 371
BslI CCNNNNNNNGG 3 cut(s) 196, 388, 406
BsmAI GTCTC 1 cut(s) 58
BsnI GGCC 2 cut(s) 189, 216
Bso31I GGTCTC 1 cut(s) 58
BsoBI CYCGRG 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 313
Bsp1407I TGTACA 1 cut(s) 48
Bsp143I GATC 1 cut(s) 93
BspACI CCGC 3 cut(s) 97, 105, 200
BspANI GGCC 2 cut(s) 189, 216
BspFNI CGCG 1 cut(s) 99
BspLI GGNNCC 2 cut(s) 294, 348
BspMAI CTGCAG 1 cut(s) 442
BspPI GGATC 1 cut(s) 88
BspTNI GGTCTC 1 cut(s) 58
BsrFI RCCGGY 1 cut(s) 185
BsrGI TGTACA 1 cut(s) 48
BssAI RCCGGY 1 cut(s) 185
BssECI CCNNGG 4 cut(s) 288, 295, 305, 383
BssMI GATC 1 cut(s) 93
BssNI GRCGYC 1 cut(s) 89
BssT1I CCWWGG 1 cut(s) 383
Bst2UI CCWGG 1 cut(s) 297
Bst4CI ACNGT 1 cut(s) 225
BstACI GRCGYC 1 cut(s) 89
BstAUI TGTACA 1 cut(s) 48
BstC8I GCNNGC 2 cut(s) 81, 187
BstDSI CCRYGG 1 cut(s) 288
BstFNI CGCG 1 cut(s) 99
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 1 cut(s) 96
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 1 cut(s) 93
BstMWI GCNNNNNNNGC 6 cut(s) 43, 160, 182, 247, 410, 449
BstNI CCWGG 1 cut(s) 297
BstSCI CCNGG 2 cut(s) 295, 304
BstSFI CTRYAG 1 cut(s) 438
BstSLI GKGCMC 1 cut(s) 313
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 7 cut(s) 24, 113, 150, 234, 296, 400, 452
BsuRI GGCC 2 cut(s) 189, 216
BtgI CCRYGG 1 cut(s) 288
BtsI GCAGTG 1 cut(s) 311
BtsIMutI CAGTG 2 cut(s) 221, 311
Cac8I GCNNGC 2 cut(s) 81, 187
CfoI GCGC 1 cut(s) 101
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 2 cut(s) 292, 347
Csp6I GTAC 1 cut(s) 49
CviAII CATG 1 cut(s) 76
CviQI GTAC 1 cut(s) 49
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 383
Eco31I GGTCTC 1 cut(s) 58
Eco47I GGWCC 2 cut(s) 292, 347
Eco57I CTGAAG 1 cut(s) 179
Eco88I CYCGRG 1 cut(s) 242
EcoO109I RGGNCCY 1 cut(s) 347
EcoRI GAATTC 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 295
EcoT14I CCWWGG 1 cut(s) 383
ErhI CCWWGG 1 cut(s) 383
FaeI CATG 1 cut(s) 79
FaiI YATR 1 cut(s) 77
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FatI CATG 1 cut(s) 75
Fnu4HI GCNGC 9 cut(s) 38, 102, 105, 164, 201, 248, 285, 414, 441
Fsp4HI GCNGC 9 cut(s) 38, 102, 105, 164, 201, 248, 285, 414, 441
GlaI GCGC 1 cut(s) 100
GluI GCNGC 9 cut(s) 38, 102, 105, 164, 201, 248, 285, 414, 441
HaeIII GGCC 2 cut(s) 189, 216
HapII CCGG 4 cut(s) 186, 213, 305, 371
HhaI GCGC 1 cut(s) 101
Hin1I GRCGYC 1 cut(s) 89
Hin1II CATG 1 cut(s) 79
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HinfI GANTC 1 cut(s) 273
HpaII CCGG 4 cut(s) 186, 213, 305, 371
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 1 cut(s) 332
Hpy8I GTNNAC 1 cut(s) 51
Hpy99I CGWCG 1 cut(s) 94
HpyAV CCTTC 2 cut(s) 200, 454
HpyCH4III ACNGT 1 cut(s) 225
HpyCH4IV ACGT 1 cut(s) 89
HpyCH4V TGCA 3 cut(s) 440, 452, 475
HpyF10VI GCNNNNNNNGC 6 cut(s) 43, 160, 182, 247, 410, 449
HpySE526I ACGT 1 cut(s) 89
Hsp92I GRCGYC 1 cut(s) 89
Hsp92II CATG 1 cut(s) 79
HspAI GCGC 1 cut(s) 99
KroI GCCGGC 1 cut(s) 185
KroNI GCCGGC 1 cut(s) 187
Kzo9I GATC 1 cut(s) 93
LmnI GCTCC 1 cut(s) 151
Lsp1109I GCAGC 7 cut(s) 24, 113, 150, 234, 296, 400, 452
LweI GCATC 1 cut(s) 461
MaeII ACGT 1 cut(s) 89
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MboII GAAGA 2 cut(s) 127, 275
MhlI GDGCHC 1 cut(s) 313
MluCI AATT 3 cut(s) 118, 266, 457
MlyI GAGTC 1 cut(s) 282
MnlI CCTC 4 cut(s) 23, 227, 367, 382
MroNI GCCGGC 1 cut(s) 185
MspI CCGG 4 cut(s) 186, 213, 305, 371
MspR9I CCNGG 2 cut(s) 297, 306
MvaI CCWGG 1 cut(s) 297
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 6 cut(s) 43, 160, 182, 247, 410, 449
NaeI GCCGGC 1 cut(s) 187
NciI CCSGG 1 cut(s) 306
NdeII GATC 1 cut(s) 93
NgoMIV GCCGGC 1 cut(s) 185
NlaIII CATG 1 cut(s) 79
NlaIV GGNNCC 2 cut(s) 294, 348
NmeAIII GCCGAG 1 cut(s) 202
PdiI GCCGGC 1 cut(s) 187
PflMI CCANNNNNTGG 1 cut(s) 406
PkrI GCNGC 9 cut(s) 39, 103, 106, 165, 202, 249, 286, 415, 442
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
PpuMI RGGWCCY 1 cut(s) 347
Psp5II RGGWCCY 1 cut(s) 347
Psp6I CCWGG 1 cut(s) 295
PspGI CCWGG 1 cut(s) 295
PspN4I GGNNCC 2 cut(s) 294, 348
PspPI GGNCC 2 cut(s) 292, 347
PspPPI RGGWCCY 1 cut(s) 347
PstI CTGCAG 1 cut(s) 442
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
SatI GCNGC 9 cut(s) 38, 102, 105, 164, 201, 248, 285, 414, 441
Sau3AI GATC 1 cut(s) 93
Sau96I GGNCC 2 cut(s) 292, 347
SchI GAGTC 1 cut(s) 282
ScrFI CCNGG 2 cut(s) 297, 306
SduI GDGCHC 1 cut(s) 313
SetI ASST 8 cut(s) 92, 138, 165, 243, 329, 393, 406, 488
SfaNI GCATC 1 cut(s) 461
SfcI CTRYAG 1 cut(s) 438
SinI GGWCC 2 cut(s) 292, 347
Sse9I AATT 3 cut(s) 118, 266, 457
SsiI CCGC 3 cut(s) 97, 105, 200
StyD4I CCNGG 2 cut(s) 295, 304
StyI CCWWGG 1 cut(s) 383
TaaI ACNGT 1 cut(s) 225
TaiI ACGT 1 cut(s) 92
TaqI TCGA 3 cut(s) 92, 122, 467
TasI AATT 3 cut(s) 118, 266, 457
TatI WGTACW 1 cut(s) 48
TauI GCSGC 2 cut(s) 107, 203
TscAI CASTG 2 cut(s) 228, 318
TseI GCWGC 7 cut(s) 37, 101, 163, 247, 284, 413, 440
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 2 cut(s) 228, 318
Van91I CCANNNNNTGG 1 cut(s) 406
VpaK11BI GGWCC 2 cut(s) 292, 347
XapI RAATTY 3 cut(s) 118, 266, 457
ZraI GACGTC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.