Rh7DG056800

Protein of unknown function (DUF1118)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0013432
Physical Location & Seq
Forward (+)
4345429 .. 4346185
757 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG056800.1

Sequence Viewer

Length: 426 bp
ATGGCTGCCCGGACACCGATCCGCGCAGCGAACAAAACCGTTAGCTCCAAAAAGAATTCGACTCAGGTGAAGCTACTAACAAGGGTGGAGCAACTCAAGCTGCTGACCAAGGCCGAGAAAGCTGGTCTGCTATCGGCGGCAGAGAAGTCCGGACTCTCACTGTCGGCAATAGAGAAGCTCGGTCTGCTGTCAAAGGCTGAAGAATTTGGAGTCCTATCGGCGGCCACTGACCCTGGAACTCCGGGGGCATTGCTGACTCTGAGCTTGGGACTACTGCTTTTGGGTCCATTGTCTGTTTTTCTTGTGCCTGAGGATTACCCTTGGGAGGTTGTTGTACAGGCTGTGGTTGCCGCTGTTTCTGTGGTGGGTGGTTCTGCGGCTTTTGGTGCATCAAATTTTGTATCCAACTTGCAGAAATCAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1118

Protein Analysis

141

Amino Acids

14.5

Weight (kDa)

9.52

Isoelectric Point (pI)

21.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1118 PF06549 28 - 140 1.6e-47 Protein of unknown function (DUF1118)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08050
fragaria_vesca FvH4_5g13740
malus_domestica MD06G1225900.v1.1 MD14G1212800.v1.1
prunus_persica Prupe.5G206100_v2.0.a1
pyrus_communis pycom06g18030 pycom14g17640
rosa_chinensis RchiOBHm_Chr7g0183201
rosa_laevigata RLG00000005067
rosa_multiflora Rmu_sc0006717.1_g000006 Rmu_ssc0000111.1_g000019
rosa_roxburghii Rroxscaffold_3G00270660
rosa_rugosa Rorug06G0454800
rosa_samantha Rh7AG057200 Rh7BG056900 Rh7CG058000 Rh7DG056800
rosa_wichuraiana Rw7G004670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 24
AccIII TCCGGA 1 cut(s) 149
AciI CCGC 5 cut(s) 22, 137, 221, 351, 377
AclWI GGATC 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 222
AcsI RAATTY 3 cut(s) 55, 203, 394
AcuI CTGAAG 1 cut(s) 219
AfaI GTAC 1 cut(s) 336
AfiI CCNNNNNNNGG 2 cut(s) 220, 325
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 6 cut(s) 45, 73, 100, 122, 178, 264
AluI AGCT 6 cut(s) 45, 73, 100, 122, 178, 264
AlwI GGATC 1 cut(s) 13
Aor13HI TCCGGA 1 cut(s) 149
AoxI GGCC 2 cut(s) 111, 222
ApeKI GCWGC 3 cut(s) 5, 26, 100
ApoI RAATTY 3 cut(s) 55, 203, 394
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 284
AsuC2I CCSGG 2 cut(s) 10, 243
AsuHPI GGTGA 1 cut(s) 79
AvaII GGWCC 1 cut(s) 284
AxyI CCTNAGG 1 cut(s) 309
BbvI GCAGC 2 cut(s) 38, 87
BciT130I CCWGG 1 cut(s) 234
BciVI GTATCC 1 cut(s) 412
BcnI CCSGG 2 cut(s) 10, 243
BfuI GTATCC 1 cut(s) 412
BisI GCNGC 7 cut(s) 6, 27, 101, 138, 222, 351, 378
BlsI GCNGC 7 cut(s) 7, 28, 102, 139, 223, 352, 379
Bme1390I CCNGG 3 cut(s) 10, 234, 243
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 3 cut(s) 10, 234, 243
BmsI GCATC 1 cut(s) 398
BpuEI CTTGAG 1 cut(s) 80
BpuMI CCSGG 2 cut(s) 10, 243
BsaJI CCNNGG 4 cut(s) 108, 232, 242, 320
BsaWI WCCGGW 1 cut(s) 149
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 325
Bse21I CCTNAGG 1 cut(s) 309
Bse3DI GCAATG 1 cut(s) 248
BseAI TCCGGA 1 cut(s) 149
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 4 cut(s) 108, 232, 242, 320
BseLI CCNNNNNNNGG 2 cut(s) 220, 325
BseMI GCAATG 1 cut(s) 248
BseMII CTCAG 3 cut(s) 77, 251, 300
BseXI GCAGC 2 cut(s) 38, 87
Bsh1236I CGCG 1 cut(s) 24
BshFI GGCC 2 cut(s) 113, 224
BsiSI CCGG 3 cut(s) 10, 150, 242
BslFI GGGAC 1 cut(s) 282
BslI CCNNNNNNNGG 2 cut(s) 220, 325
BsmFI GGGAC 1 cut(s) 282
BsnI GGCC 2 cut(s) 113, 224
Bsp13I TCCGGA 1 cut(s) 149
Bsp1407I TGTACA 1 cut(s) 334
Bsp143I GATC 1 cut(s) 18
BspACI CCGC 5 cut(s) 22, 137, 221, 351, 377
BspANI GGCC 2 cut(s) 113, 224
BspCNI CTCAG 3 cut(s) 76, 252, 301
BspEI TCCGGA 1 cut(s) 149
BspFNI CGCG 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 285
BspPI GGATC 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 248
BsrGI TGTACA 1 cut(s) 334
BssECI CCNNGG 4 cut(s) 108, 232, 242, 320
BssMI GATC 1 cut(s) 18
BssT1I CCWWGG 2 cut(s) 108, 320
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 2 cut(s) 40, 162
BstAUI TGTACA 1 cut(s) 334
BstDEI CTNAG 3 cut(s) 63, 260, 309
BstFNI CGCG 1 cut(s) 24
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 1 cut(s) 21
BstMBI GATC 1 cut(s) 18
BstMWI GCNNNNNNNGC 5 cut(s) 97, 119, 184, 347, 386
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 3 cut(s) 8, 232, 241
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 2 cut(s) 38, 87
Bsu36I CCTNAGG 1 cut(s) 309
BsuI GTATCC 1 cut(s) 412
BsuRI GGCC 2 cut(s) 113, 224
BtsIMutI CAGTG 2 cut(s) 158, 225
CfoI GCGC 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 284
Csp6I GTAC 1 cut(s) 335
CviQI GTAC 1 cut(s) 335
DdeI CTNAG 3 cut(s) 63, 260, 309
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
EaeI YGGCCR 1 cut(s) 222
Eco130I CCWWGG 2 cut(s) 108, 320
Eco47I GGWCC 1 cut(s) 284
Eco57I CTGAAG 1 cut(s) 219
Eco81I CCTNAGG 1 cut(s) 309
EcoRI GAATTC 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 2 cut(s) 108, 320
ErhI CCWWGG 2 cut(s) 108, 320
FaqI GGGAC 1 cut(s) 282
Fnu4HI GCNGC 7 cut(s) 6, 27, 101, 138, 222, 351, 378
Fsp4HI GCNGC 7 cut(s) 6, 27, 101, 138, 222, 351, 378
GlaI GCGC 1 cut(s) 25
GluI GCNGC 7 cut(s) 6, 27, 101, 138, 222, 351, 378
HaeIII GGCC 2 cut(s) 113, 224
HapII CCGG 3 cut(s) 10, 150, 242
HhaI GCGC 1 cut(s) 26
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HinfI GANTC 4 cut(s) 61, 153, 210, 256
HpaII CCGG 3 cut(s) 10, 150, 242
HphI GGTGA 1 cut(s) 79
Hpy188I TCNGA 1 cut(s) 261
Hpy188III TCNNGA 1 cut(s) 150
HpyCH4III ACNGT 2 cut(s) 40, 162
HpyCH4V TGCA 2 cut(s) 389, 412
HpyF10VI GCNNNNNNNGC 5 cut(s) 97, 119, 184, 347, 386
HpyF3I CTNAG 3 cut(s) 63, 260, 309
HspAI GCGC 1 cut(s) 24
Kpn2I TCCGGA 1 cut(s) 149
Kzo9I GATC 1 cut(s) 18
LmnI GCTCC 2 cut(s) 50, 88
LpnPI CCDG 9 cut(s) 23, 50, 108, 163, 219, 246, 255, 321, 323
Lsp1109I GCAGC 2 cut(s) 38, 87
LweI GCATC 1 cut(s) 398
MalI GATC 1 cut(s) 20
MboI GATC 1 cut(s) 18
MboII GAAGA 1 cut(s) 212
MluCI AATT 4 cut(s) 55, 203, 394, 421
MlyI GAGTC 4 cut(s) 55, 147, 219, 250
MnlI CCTC 2 cut(s) 304, 319
MroI TCCGGA 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 353
MspI CCGG 3 cut(s) 10, 150, 242
MspR9I CCNGG 3 cut(s) 10, 234, 243
MvaI CCWGG 1 cut(s) 234
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 5 cut(s) 97, 119, 184, 347, 386
NciI CCSGG 2 cut(s) 10, 243
NdeII GATC 1 cut(s) 18
NlaIV GGNNCC 1 cut(s) 285
NmeAIII GCCGAG 1 cut(s) 139
PkrI GCNGC 7 cut(s) 7, 28, 102, 139, 223, 352, 379
PleI GAGTC 4 cut(s) 55, 147, 218, 250
PpsI GAGTC 4 cut(s) 55, 147, 218, 250
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 1 cut(s) 284
RsaI GTAC 1 cut(s) 336
RsaNI GTAC 1 cut(s) 335
SatI GCNGC 7 cut(s) 6, 27, 101, 138, 222, 351, 378
Sau3AI GATC 1 cut(s) 18
Sau96I GGNCC 1 cut(s) 284
SchI GAGTC 4 cut(s) 55, 147, 219, 250
ScrFI CCNGG 3 cut(s) 10, 234, 243
SetI ASST 8 cut(s) 47, 69, 75, 102, 124, 180, 266, 330
SfaNI GCATC 1 cut(s) 398
SinI GGWCC 1 cut(s) 284
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 4 cut(s) 55, 203, 394, 421
SsiI CCGC 5 cut(s) 22, 137, 221, 351, 377
StyD4I CCNGG 3 cut(s) 8, 232, 241
StyI CCWWGG 2 cut(s) 108, 320
TaaI ACNGT 2 cut(s) 40, 162
TaqI TCGA 1 cut(s) 59
TaqII GACCGA 1 cut(s) 170
TasI AATT 4 cut(s) 55, 203, 394, 421
TatI WGTACW 1 cut(s) 334
TauI GCSGC 4 cut(s) 140, 224, 353, 380
TscAI CASTG 2 cut(s) 165, 232
TseI GCWGC 3 cut(s) 5, 26, 100
TspRI CASTG 2 cut(s) 165, 232
VpaK11BI GGWCC 1 cut(s) 284
XapI RAATTY 3 cut(s) 55, 203, 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.