Rmu_sc0006717.1_g000006

Protein of unknown function (DUF1118)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006717.1
OG0013432
Physical Location & Seq
Reverse (-)
19132 .. 19985
854 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006717.1_g000006.1.cds

Sequence Viewer

Length: 501 bp
atggaggccaaagcatttttgggcagtagaggagtgctgccgttggtgtatacttctccacagagacccaaatccatggctgcccggacaccgatccgcgcagcgaacaaaaccgttagctccaaaaagaattcgactcaagtgaagctactaacaagggtggagcaactgaagctgctgaccaaggccgagaaagctggtctgctatcggcggcagagaaatccggactctcactgtcggcaatagagaagctcggtctgctgtcaaaggctgaagaatttggagtcctatcggcggccactgaccctggaactccgggggcattgctgactctgagcttgggactactgcttttgggtccattgtctgtttttcttgtgcctgaggattacccttgggaggttgttgtacaggctgtggttgctgctgtttctgtggtgggtggttctgcggcttttggtgcatcaaattttgtatccaacttgcagaaatcaaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1118

Protein Analysis

166

Amino Acids

17.22

Weight (kDa)

9.82

Isoelectric Point (pI)

25.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08050
fragaria_vesca FvH4_5g13740
malus_domestica MD06G1225900.v1.1 MD14G1212800.v1.1
prunus_persica Prupe.5G206100_v2.0.a1
pyrus_communis pycom06g18030 pycom14g17640
rosa_chinensis RchiOBHm_Chr7g0183201
rosa_laevigata RLG00000005067
rosa_multiflora Rmu_sc0006717.1_g000006 Rmu_ssc0000111.1_g000019
rosa_roxburghii Rroxscaffold_3G00270660
rosa_rugosa Rorug06G0454800
rosa_samantha Rh7AG057200 Rh7BG056900 Rh7CG058000 Rh7DG056800
rosa_wichuraiana Rw7G004670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 50
AccII CGCG 1 cut(s) 99
AccIII TCCGGA 1 cut(s) 224
AciI CCGC 4 cut(s) 97, 212, 296, 452
AclWI GGATC 1 cut(s) 88
AcoI YGGCCR 1 cut(s) 297
AcsI RAATTY 3 cut(s) 130, 278, 469
AcuI CTGAAG 2 cut(s) 191, 294
AfaI GTAC 1 cut(s) 411
AfiI CCNNNNNNNGG 2 cut(s) 295, 400
AjnI CCWGG 1 cut(s) 307
AluBI AGCT 6 cut(s) 120, 148, 175, 197, 253, 339
AluI AGCT 6 cut(s) 120, 148, 175, 197, 253, 339
Alw26I GTCTC 1 cut(s) 58
AlwI GGATC 1 cut(s) 88
Aor13HI TCCGGA 1 cut(s) 224
AoxI GGCC 3 cut(s) 6, 186, 297
ApeKI GCWGC 5 cut(s) 37, 80, 101, 175, 425
ApoI RAATTY 3 cut(s) 130, 278, 469
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 359
AsuC2I CCSGG 2 cut(s) 85, 318
AvaII GGWCC 1 cut(s) 359
AxyI CCTNAGG 1 cut(s) 384
BbvI GCAGC 5 cut(s) 24, 67, 113, 162, 412
BceAI ACGGC 1 cut(s) 25
BciT130I CCWGG 1 cut(s) 309
BciVI GTATCC 1 cut(s) 487
BcnI CCSGG 2 cut(s) 85, 318
BcoDI GTCTC 1 cut(s) 58
BfuI GTATCC 1 cut(s) 487
BisI GCNGC 8 cut(s) 38, 81, 102, 176, 213, 297, 426, 453
BlsI GCNGC 8 cut(s) 39, 82, 103, 177, 214, 298, 427, 454
Bme1390I CCNGG 3 cut(s) 85, 309, 318
Bme18I GGWCC 1 cut(s) 359
BmgT120I GGNCC 1 cut(s) 359
BmiI GGNNCC 1 cut(s) 360
BmrFI CCNGG 3 cut(s) 85, 309, 318
BmsI GCATC 1 cut(s) 473
BpuEI CTTGAG 1 cut(s) 123
BpuMI CCSGG 2 cut(s) 85, 318
BsaI GGTCTC 1 cut(s) 58
BsaJI CCNNGG 5 cut(s) 75, 183, 307, 317, 395
BsaWI WCCGGW 1 cut(s) 224
Bsc4I CCNNNNNNNGG 2 cut(s) 295, 400
Bse21I CCTNAGG 1 cut(s) 384
Bse3DI GCAATG 1 cut(s) 323
BseAI TCCGGA 1 cut(s) 224
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 5 cut(s) 75, 183, 307, 317, 395
BseLI CCNNNNNNNGG 2 cut(s) 295, 400
BseMI GCAATG 1 cut(s) 323
BseMII CTCAG 2 cut(s) 326, 375
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 5 cut(s) 24, 67, 113, 162, 412
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 3 cut(s) 8, 188, 299
BsiSI CCGG 3 cut(s) 85, 225, 317
BslFI GGGAC 1 cut(s) 357
BslI CCNNNNNNNGG 2 cut(s) 295, 400
BsmAI GTCTC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 357
BsnI GGCC 3 cut(s) 8, 188, 299
Bso31I GGTCTC 1 cut(s) 58
Bsp13I TCCGGA 1 cut(s) 224
Bsp1407I TGTACA 1 cut(s) 409
Bsp143I GATC 1 cut(s) 93
Bsp19I CCATGG 1 cut(s) 75
BspACI CCGC 4 cut(s) 97, 212, 296, 452
BspANI GGCC 3 cut(s) 8, 188, 299
BspCNI CTCAG 2 cut(s) 327, 376
BspEI TCCGGA 1 cut(s) 224
BspFNI CGCG 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 360
BspPI GGATC 1 cut(s) 88
BspTNI GGTCTC 1 cut(s) 58
BsrDI GCAATG 1 cut(s) 323
BsrGI TGTACA 1 cut(s) 409
BssECI CCNNGG 5 cut(s) 75, 183, 307, 317, 395
BssMI GATC 1 cut(s) 93
BssNAI GTATAC 1 cut(s) 51
BssT1I CCWWGG 3 cut(s) 75, 183, 395
Bst1107I GTATAC 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 2 cut(s) 115, 237
BstAUI TGTACA 1 cut(s) 409
BstDEI CTNAG 2 cut(s) 335, 384
BstDSI CCRYGG 1 cut(s) 75
BstFNI CGCG 1 cut(s) 99
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 1 cut(s) 96
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 1 cut(s) 93
BstMWI GCNNNNNNNGC 5 cut(s) 172, 194, 259, 422, 461
BstNI CCWGG 1 cut(s) 309
BstSCI CCNGG 3 cut(s) 83, 307, 316
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 5 cut(s) 24, 67, 113, 162, 412
BstXI CCANNNNNNTGG 1 cut(s) 76
BstZ17I GTATAC 1 cut(s) 51
Bsu36I CCTNAGG 1 cut(s) 384
BsuI GTATCC 1 cut(s) 487
BsuRI GGCC 3 cut(s) 8, 188, 299
BtgI CCRYGG 1 cut(s) 75
BtsIMutI CAGTG 2 cut(s) 233, 300
CfoI GCGC 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 359
Csp6I GTAC 1 cut(s) 410
CviAII CATG 1 cut(s) 76
CviQI GTAC 1 cut(s) 410
DdeI CTNAG 2 cut(s) 335, 384
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
EaeI YGGCCR 1 cut(s) 297
Eco130I CCWWGG 3 cut(s) 75, 183, 395
Eco31I GGTCTC 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 359
Eco57I CTGAAG 2 cut(s) 191, 294
Eco81I CCTNAGG 1 cut(s) 384
EcoRI GAATTC 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 307
EcoT14I CCWWGG 3 cut(s) 75, 183, 395
ErhI CCWWGG 3 cut(s) 75, 183, 395
FaeI CATG 1 cut(s) 79
FaiI YATR 2 cut(s) 51, 77
FaqI GGGAC 1 cut(s) 357
FatI CATG 1 cut(s) 75
FblI GTMKAC 1 cut(s) 50
Fnu4HI GCNGC 8 cut(s) 38, 81, 102, 176, 213, 297, 426, 453
Fsp4HI GCNGC 8 cut(s) 38, 81, 102, 176, 213, 297, 426, 453
GlaI GCGC 1 cut(s) 100
GluI GCNGC 8 cut(s) 38, 81, 102, 176, 213, 297, 426, 453
HaeIII GGCC 3 cut(s) 8, 188, 299
HapII CCGG 3 cut(s) 85, 225, 317
HhaI GCGC 1 cut(s) 101
Hin1II CATG 1 cut(s) 79
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HinfI GANTC 4 cut(s) 136, 228, 285, 331
HpaII CCGG 3 cut(s) 85, 225, 317
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 1 cut(s) 336
Hpy188III TCNNGA 1 cut(s) 225
Hpy8I GTNNAC 1 cut(s) 51
HpyCH4III ACNGT 2 cut(s) 115, 237
HpyCH4V TGCA 2 cut(s) 464, 487
HpyF10VI GCNNNNNNNGC 5 cut(s) 172, 194, 259, 422, 461
HpyF3I CTNAG 2 cut(s) 335, 384
Hsp92II CATG 1 cut(s) 79
HspAI GCGC 1 cut(s) 99
Kpn2I TCCGGA 1 cut(s) 224
Kzo9I GATC 1 cut(s) 93
LmnI GCTCC 2 cut(s) 125, 163
LpnPI CCDG 8 cut(s) 98, 183, 238, 294, 321, 330, 396, 398
Lsp1109I GCAGC 5 cut(s) 24, 67, 113, 162, 412
LweI GCATC 1 cut(s) 473
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MboII GAAGA 1 cut(s) 287
MluCI AATT 4 cut(s) 130, 278, 469, 496
MlyI GAGTC 4 cut(s) 130, 222, 294, 325
MnlI CCTC 3 cut(s) 23, 379, 394
MroI TCCGGA 1 cut(s) 224
MspI CCGG 3 cut(s) 85, 225, 317
MspR9I CCNGG 3 cut(s) 85, 309, 318
MvaI CCWGG 1 cut(s) 309
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 5 cut(s) 172, 194, 259, 422, 461
NciI CCSGG 2 cut(s) 85, 318
NcoI CCATGG 1 cut(s) 75
NdeII GATC 1 cut(s) 93
NlaIII CATG 1 cut(s) 79
NlaIV GGNNCC 1 cut(s) 360
NmeAIII GCCGAG 1 cut(s) 214
PkrI GCNGC 8 cut(s) 39, 82, 103, 177, 214, 298, 427, 454
PleI GAGTC 4 cut(s) 130, 222, 293, 325
PpsI GAGTC 4 cut(s) 130, 222, 293, 325
Psp6I CCWGG 1 cut(s) 307
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 1 cut(s) 360
PspPI GGNCC 1 cut(s) 359
RsaI GTAC 1 cut(s) 411
RsaNI GTAC 1 cut(s) 410
SatI GCNGC 8 cut(s) 38, 81, 102, 176, 213, 297, 426, 453
Sau3AI GATC 1 cut(s) 93
Sau96I GGNCC 1 cut(s) 359
SchI GAGTC 4 cut(s) 130, 222, 294, 325
ScrFI CCNGG 3 cut(s) 85, 309, 318
SetI ASST 7 cut(s) 122, 150, 177, 199, 255, 341, 405
SfaNI GCATC 1 cut(s) 473
SinI GGWCC 1 cut(s) 359
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
Sse9I AATT 4 cut(s) 130, 278, 469, 496
SsiI CCGC 4 cut(s) 97, 212, 296, 452
StyD4I CCNGG 3 cut(s) 83, 307, 316
StyI CCWWGG 3 cut(s) 75, 183, 395
TaaI ACNGT 2 cut(s) 115, 237
TaqI TCGA 1 cut(s) 134
TaqII GACCGA 1 cut(s) 245
TasI AATT 4 cut(s) 130, 278, 469, 496
TatI WGTACW 1 cut(s) 409
TauI GCSGC 3 cut(s) 215, 299, 455
TscAI CASTG 2 cut(s) 240, 307
TseI GCWGC 5 cut(s) 37, 80, 101, 175, 425
TspRI CASTG 2 cut(s) 240, 307
VpaK11BI GGWCC 1 cut(s) 359
XapI RAATTY 3 cut(s) 130, 278, 469
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
XmiI GTMKAC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.