Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011050

Physical Location & Seq

Genomic Coordinates Forward (+)

2616134 .. 2617951

Gene Structure 1818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G08139.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGATGATCTGTTACACCAGCGAGTCGAGCAGTCTCAGGTAACTCCTCCTCATGACGATTCTAATATCCATGGTGATTTTGATAACGAGGCTACGGATGAATCGCGATCCGAAACTTGTTCTGTTGTGATAGAGGGAAACTGCGACATGGTGATTGAATTAGGATTGGAATCTGGAAGTGTTATCGTTGAGAATTTAGGTGATAGTGATATTGATGTTAGCAATGATTTTGATGAACCTGATGACGACGATTTCTTTGTGGGGAGGACTGATTTTGGGCTCGAGTTCCGCGATATTGCATCTTCGGGGAATGATATCAGGTTGATTACGGTGGAATCGGGTTCAGATGATGATGATGGTGTTGAGAATGAGAGGGAATTATGGGGGATTGATCTGAATGAAGAAGATGTATATGTGAATGATGATGATGAATATGAAGATGATGATGTTAGTGTGACTATCCCTCTTTGTTGGGATTCACTCCAATTAGAAGATCGTGAGGTAACTGCTGATGAATTTGATTGGGAAGAAGTTGGTGGTGGTGGTGGTGGCGGCGTGGATGATGAGAGAGAGATACGAAGTGGCTTTGCACAAATTGATATGAATGACGAAAGTTTGATTTCTGCTTCGCCAATTATCTCTTTAGAGGGTTTAGTGACAAGGGAAAGAGCAGAGGGTTCGGGAAATCTAGGGTGGGAAGTTTTACTGAATCACACTCTAGAGATCAACTTTGATGTGGATAACAGAGAGCTGTACATTGGTGGTGATCATGACGATTATGTTCAAGACTATGATATGTTGTTTGAACAGTTTGCCGATGCTGAGGTATCCGTTATTGGTTTACCTCCGACTTCCAAATCTTTTCTCAACAATCTCCCAGTGGTTCTACTAGAAGGTGAGAACGATGATGATGGTGGTTTGGTTTGTGCAGTTTGTAAAGATGAGATGAATATCGGAAACAAAGCGGTTCAACTGCCATGTAATCATAAGTACCATAGCGAATGCATTGTACCGTGGCTCAAAGTAAGGAACACATGTCCTGTTTGTCGTTATGAGTTGCCTACAGATGATGCAGAGTATGAGCAGAGGAAGACTCAGAGAACAACAAATACTTTTGGCATGGTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

376

Amino Acids

41.96

Weight (kDa)

4.05

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08139 AT5G08139
fragaria_vesca	FvH4_5g13270
malus_domestica	MD06G1206700.v1.1
prunus_persica	Prupe.5G211100_v2.0.a1
pyrus_communis	pycom14g18010
rosa_chinensis	RchiOBHm_Chr7g0183901
rosa_laevigata	RLG00000005013 RLG00000033786
rosa_multiflora	Rmu_sc0001926.1_g000006 Rmu_sc0004712.1_g000033 Rmu_sc0007533.1_g000005 Rmu_sc0012562.1_g000017
rosa_roxburghii	Rroxscaffold_3G00270100
rosa_rugosa	Rorug06G0461300
rosa_samantha	Rh7AG062200 Rh7BG062400 Rh7CG063800 Rh7DG062200
rosa_wichuraiana	Rw7G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	106, 291
AciI	CCGC	3 cut(s)	289, 552, 965
AclWI	GGATC	1 cut(s)	102
AcsI	RAATTY	2 cut(s)	193, 515
AfaI	GTAC	3 cut(s)	755, 992, 1011
AflIII	ACRYGT	1 cut(s)	1034
AgsI	TTSAA	4 cut(s)	158, 785, 806, 971
AluBI	AGCT	1 cut(s)	751
AluI	AGCT	1 cut(s)	751
Alw26I	GTCTC	1 cut(s)	39
AlwI	GGATC	1 cut(s)	102
Ama87I	CYCGRG	1 cut(s)	281
ApoI	RAATTY	2 cut(s)	193, 515
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
AsuHPI	GGTGA	5 cut(s)	86, 163, 212, 776, 908
AvaI	CYCGRG	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	1097
BbvCI	CCTCAGC	1 cut(s)	822
BccI	CCATC	2 cut(s)	350, 905
BcgI	CGANNNNNNTGC	2 cut(s)	660, 694
BciVI	GTATCC	1 cut(s)	838
BclI	TGATCA	1 cut(s)	766
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	3 cut(s)	689, 719, 890
BfmI	CTRYAG	1 cut(s)	1062
BfuI	GTATCC	1 cut(s)	838
BisI	GCNGC	1 cut(s)	553
BlsI	GCNGC	1 cut(s)	554
BmeT110I	CYCGRG	1 cut(s)	281
BmrI	ACTGGG	1 cut(s)	872
BmsI	GCATC	3 cut(s)	308, 808, 1060
BmuI	ACTGGG	1 cut(s)	872
BpiI	GAAGAC	1 cut(s)	1097
BplI	GAGNNNNNCTC	2 cut(s)	1078, 1110
Bpu10I	CCTNAGC	1 cut(s)	822
BsaBI	GATNNNNATC	2 cut(s)	169, 950
BsaJI	CCNNGG	2 cut(s)	70, 1013
Bse1I	ACTGG	1 cut(s)	878
Bse3DI	GCAATG	1 cut(s)	229
Bse8I	GATNNNNATC	2 cut(s)	169, 950
BseDI	CCNNGG	2 cut(s)	70, 1013
BseGI	GGATG	3 cut(s)	10, 103, 565
BseJI	GATNNNNATC	2 cut(s)	169, 950
BseMI	GCAATG	1 cut(s)	229
BseMII	CTCAG	3 cut(s)	50, 813, 1109
BseNI	ACTGG	1 cut(s)	878
BseRI	GAGGAG	2 cut(s)	36, 39
BsgI	GTGCAG	1 cut(s)	948
Bsh1236I	CGCG	2 cut(s)	106, 291
BsiHKCI	CYCGRG	1 cut(s)	281
BsmAI	GTCTC	1 cut(s)	39
BsmI	GAATGC	1 cut(s)	1007
BsoBI	CYCGRG	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp1407I	TGTACA	1 cut(s)	753
Bsp143I	GATC	6 cut(s)	7, 107, 391, 493, 723, 766
Bsp19I	CCATGG	1 cut(s)	70
Bsp68I	TCGCGA	1 cut(s)	106
BspACI	CCGC	3 cut(s)	289, 552, 965
BspCNI	CTCAG	3 cut(s)	49, 814, 1108
BspFNI	CGCG	2 cut(s)	106, 291
BspHI	TCATGA	2 cut(s)	52, 769
BspPI	GGATC	1 cut(s)	102
BsrDI	GCAATG	1 cut(s)	229
BsrGI	TGTACA	1 cut(s)	753
BsrI	ACTGG	1 cut(s)	878
BssECI	CCNNGG	2 cut(s)	70, 1013
BssMI	GATC	6 cut(s)	7, 107, 391, 493, 723, 766
BssT1I	CCWWGG	1 cut(s)	70
Bst4CI	ACNGT	3 cut(s)	331, 810, 1014
BstAUI	TGTACA	1 cut(s)	753
BstDEI	CTNAG	3 cut(s)	36, 822, 1095
BstDSI	CCRYGG	2 cut(s)	70, 1013
BstF5I	GGATG	3 cut(s)	10, 103, 565
BstFNI	CGCG	2 cut(s)	106, 291
BstKTI	GATC	6 cut(s)	10, 110, 394, 496, 726, 769
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	6 cut(s)	7, 107, 391, 493, 723, 766
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstNSI	RCATGY	1 cut(s)	1038
BstSFI	CTRYAG	1 cut(s)	1062
BstUI	CGCG	2 cut(s)	106, 291
BstV2I	GAAGAC	1 cut(s)	1097
BsuI	GTATCC	1 cut(s)	838
BtgI	CCRYGG	2 cut(s)	70, 1013
BtsCI	GGATG	3 cut(s)	10, 103, 565
BtsIMutI	CAGTG	1 cut(s)	885
BtuMI	TCGCGA	1 cut(s)	106
CciI	TCATGA	2 cut(s)	52, 769
Csp6I	GTAC	3 cut(s)	754, 991, 1010
CviAII	CATG	7 cut(s)	53, 71, 148, 770, 978, 1035, 1120
CviJI	RGCY	5 cut(s)	92, 280, 585, 751, 1018
CviKI_1	RGCY	5 cut(s)	92, 280, 585, 751, 1018
CviQI	GTAC	3 cut(s)	754, 991, 1010
DdeI	CTNAG	3 cut(s)	36, 822, 1095
DpnI	GATC	6 cut(s)	9, 109, 393, 495, 725, 768
DpnII	GATC	6 cut(s)	7, 107, 391, 493, 723, 766
Eco130I	CCWWGG	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	282
Eco32I	GATATC	1 cut(s)	316
Eco88I	CYCGRG	1 cut(s)	281
EcoRV	GATATC	1 cut(s)	316
EcoT14I	CCWWGG	1 cut(s)	70
EcoT22I	ATGCAT	1 cut(s)	1007
EcoT38I	GRGCYC	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	70
FaeI	CATG	7 cut(s)	56, 74, 151, 773, 981, 1038, 1123
FatI	CATG	7 cut(s)	52, 70, 147, 769, 977, 1034, 1119
FbaI	TGATCA	1 cut(s)	766
Fnu4HI	GCNGC	1 cut(s)	553
FokI	GGATG	3 cut(s)	17, 110, 572
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	1 cut(s)	553
FspBI	CTAG	3 cut(s)	689, 719, 890
GluI	GCNGC	1 cut(s)	553
Hin1II	CATG	7 cut(s)	56, 74, 151, 773, 981, 1038, 1123
HinfI	GANTC	8 cut(s)	24, 59, 101, 170, 335, 476, 709, 1093
HphI	GGTGA	5 cut(s)	86, 163, 212, 776, 908
Hpy166II	GTNNAC	1 cut(s)	842
Hpy188I	TCNGA	6 cut(s)	112, 346, 396, 849, 956, 1098
Hpy188III	TCNNGA	8 cut(s)	53, 105, 174, 497, 681, 719, 770, 785
Hpy8I	GTNNAC	1 cut(s)	842
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	1 cut(s)	887
HpyCH4III	ACNGT	3 cut(s)	331, 810, 1014
HpyCH4V	TGCA	5 cut(s)	299, 590, 929, 1005, 1073
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
HpyF3I	CTNAG	3 cut(s)	36, 822, 1095
Hsp92II	CATG	7 cut(s)	56, 74, 151, 773, 981, 1038, 1123
Ksp22I	TGATCA	1 cut(s)	766
Kzo9I	GATC	6 cut(s)	7, 107, 391, 493, 723, 766
LpnPI	CCDG	7 cut(s)	23, 32, 159, 252, 304, 891, 1053
LweI	GCATC	3 cut(s)	308, 808, 1060
MaeI	CTAG	3 cut(s)	689, 719, 890
MaeIII	GTNAC	5 cut(s)	12, 40, 454, 502, 655
MalI	GATC	6 cut(s)	9, 109, 393, 495, 725, 768
MboI	GATC	6 cut(s)	7, 107, 391, 493, 723, 766
MboII	GAAGA	7 cut(s)	294, 413, 416, 449, 503, 539, 1102
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	7 cut(s)	158, 193, 377, 485, 515, 594, 633
MlyI	GAGTC	2 cut(s)	33, 1087
MmeI	TCCRAC	1 cut(s)	872
Mph1103I	ATGCAT	1 cut(s)	1007
Mva1269I	GAATGC	1 cut(s)	1007
MvnI	CGCG	2 cut(s)	106, 291
MwoI	GCNNNNNNNGC	1 cut(s)	28
NcoI	CCATGG	1 cut(s)	70
NdeII	GATC	6 cut(s)	7, 107, 391, 493, 723, 766
NlaIII	CATG	7 cut(s)	56, 74, 151, 773, 981, 1038, 1123
NmuCI	GTSAC	2 cut(s)	454, 655
NruI	TCGCGA	1 cut(s)	106
NsiI	ATGCAT	1 cut(s)	1007
NspI	RCATGY	1 cut(s)	1038
PaeR7I	CTCGAG	1 cut(s)	281
PagI	TCATGA	2 cut(s)	52, 769
PciI	ACATGT	1 cut(s)	1034
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PctI	GAATGC	1 cut(s)	1007
PfeI	GAWTC	6 cut(s)	59, 101, 170, 335, 476, 709
PkrI	GCNGC	1 cut(s)	554
PleI	GAGTC	2 cut(s)	32, 1087
PpsI	GAGTC	2 cut(s)	32, 1087
PscI	ACATGT	1 cut(s)	1034
PspXI	VCTCGAGB	1 cut(s)	281
PsrI	GAACNNNNNNTAC	2 cut(s)	1093, 1125
RruI	TCGCGA	1 cut(s)	106
RsaI	GTAC	3 cut(s)	755, 992, 1011
RsaNI	GTAC	3 cut(s)	754, 991, 1010
SatI	GCNGC	1 cut(s)	553
Sau3AI	GATC	6 cut(s)	7, 107, 391, 493, 723, 766
SchI	GAGTC	2 cut(s)	33, 1087
SduI	GDGCHC	1 cut(s)	282
SetI	ASST	9 cut(s)	42, 202, 241, 323, 504, 753, 828, 847, 898
SfaNI	GCATC	3 cut(s)	308, 808, 1060
SfcI	CTRYAG	1 cut(s)	1062
Sfr274I	CTCGAG	1 cut(s)	281
SlaI	CTCGAG	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	7 cut(s)	158, 193, 377, 485, 515, 594, 633
SsiI	CCGC	3 cut(s)	289, 552, 965
SspMI	CTAG	3 cut(s)	689, 719, 890
StyI	CCWWGG	1 cut(s)	70
TaaI	ACNGT	3 cut(s)	331, 810, 1014
TaqI	TCGA	2 cut(s)	27, 282
TasI	AATT	7 cut(s)	158, 193, 377, 485, 515, 594, 633
TatI	WGTACW	1 cut(s)	753
TauI	GCSGC	1 cut(s)	555
TfiI	GAWTC	6 cut(s)	59, 101, 170, 335, 476, 709
TscAI	CASTG	1 cut(s)	885
TseFI	GTSAC	2 cut(s)	454, 655
Tsp45I	GTSAC	2 cut(s)	454, 655
TspDTI	ATGAA	8 cut(s)	114, 249, 414, 444, 450, 528, 617, 962
TspGWI	ACGGA	2 cut(s)	110, 820
TspRI	CASTG	1 cut(s)	885
XapI	RAATTY	2 cut(s)	193, 515
XbaI	TCTAGA	1 cut(s)	718
XceI	RCATGY	1 cut(s)	1038
XhoI	CTCGAG	1 cut(s)	281
XspI	CTAG	3 cut(s)	689, 719, 890
Zsp2I	ATGCAT	1 cut(s)	1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.