Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012562.1

Orthogroup ID

OG0011050

Physical Location & Seq

Genomic Coordinates Reverse (-)

69575 .. 70093

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012562.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atggcggaagtcacctacctccaaatccatgaccttgaagaaaacctagccttcgaatccctcccttactggtcctccaatgacttcgacctctacatctcctccgatcccgatttcccgccgtcccagtttgtcaccgtccacgaagaagacgacgaatggggtagggtggagccgtttgaaagctgcgtgaggctcgttaggtttggatccgagtctgatgaggatgagaatgggcttattgggcttgatttgcattcggaggaggagtatggtgaggaccatattcatggtgattacaatgacgaaacgggggttcctttgtgctgggattcgcttcgattggaggagcagagggtgagtaatgaggagtttgagtgggaagaagttgatggtagtgtagaagaggttttcagaatgcttgttgatcctgataatgaggaggaatcaagttttgtttcagtttcgctttcggcaatggcagcccctgaggaggaagtgagtgtggagagagtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

172

Amino Acids

19.84

Weight (kDa)

4.05

Isoelectric Point (pI)

60.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08139 AT5G08139
fragaria_vesca	FvH4_5g13270
malus_domestica	MD06G1206700.v1.1
prunus_persica	Prupe.5G211100_v2.0.a1
pyrus_communis	pycom14g18010
rosa_chinensis	RchiOBHm_Chr7g0183901
rosa_laevigata	RLG00000005013 RLG00000033786
rosa_multiflora	Rmu_sc0001926.1_g000006 Rmu_sc0004712.1_g000033 Rmu_sc0007533.1_g000005 Rmu_sc0012562.1_g000017
rosa_roxburghii	Rroxscaffold_3G00270100
rosa_rugosa	Rorug06G0461300
rosa_samantha	Rh7AG062200 Rh7BG062400 Rh7CG063800 Rh7DG062200
rosa_wichuraiana	Rw7G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 119
AclWI	GGATC	4 cut(s)	101, 204, 217, 422
AfiI	CCNNNNNNNGG	1 cut(s)	493
AgsI	TTSAA	2 cut(s)	38, 182
AluBI	AGCT	1 cut(s)	186
AluI	AGCT	1 cut(s)	186
AlwI	GGATC	4 cut(s)	101, 204, 217, 422
AlwNI	CAGNNNCTG	1 cut(s)	488
ApeKI	GCWGC	2 cut(s)	186, 482
AspS9I	GGNCC	2 cut(s)	72, 280
AsuHPI	GGTGA	5 cut(s)	4, 127, 287, 305, 370
AsuII	TTCGAA	1 cut(s)	54
AvaII	GGWCC	2 cut(s)	72, 280
AxyI	CCTNAGG	1 cut(s)	489
BamHI	GGATCC	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	173, 494
BccI	CCATC	1 cut(s)	386
BceAI	ACGGC	2 cut(s)	106, 160
BfaI	CTAG	1 cut(s)	47
BisI	GCNGC	2 cut(s)	187, 483
BlsI	GCNGC	2 cut(s)	188, 484
Bme18I	GGWCC	2 cut(s)	72, 280
BmgT120I	GGNCC	2 cut(s)	72, 280
BmiI	GGNNCC	3 cut(s)	174, 211, 318
BmrI	ACTGGG	1 cut(s)	121
BmuI	ACTGGG	1 cut(s)	121
BpiI	GAAGAC	1 cut(s)	156
Bpu14I	TTCGAA	1 cut(s)	54
BsaXI	ACNNNNNCTCC	8 cut(s)	59, 86, 89, 116, 254, 284, 362, 392
Bsc4I	CCNNNNNNNGG	1 cut(s)	493
Bse1I	ACTGG	2 cut(s)	74, 127
Bse21I	CCTNAGG	1 cut(s)	489
Bse3DI	GCAATG	1 cut(s)	483
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	493
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	2 cut(s)	74, 127
BseRI	GAGGAG	7 cut(s)	91, 278, 281, 362, 383, 455, 506
BseXI	GCAGC	2 cut(s)	173, 494
BseYI	CCCAGC	1 cut(s)	327
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	1 cut(s)	493
BsmFI	GGGAC	1 cut(s)	109
BsmI	GAATGC	2 cut(s)	256, 423
Bsp119I	TTCGAA	1 cut(s)	54
Bsp143I	GATC	3 cut(s)	106, 209, 427
BspACI	CCGC	2 cut(s)	5, 119
BspCNI	CTCAG	1 cut(s)	481
BspLI	GGNNCC	3 cut(s)	174, 211, 318
BspPI	GGATC	4 cut(s)	101, 204, 217, 422
BspT104I	TTCGAA	1 cut(s)	54
BsrDI	GCAATG	1 cut(s)	483
BsrI	ACTGG	2 cut(s)	74, 127
BssMI	GATC	3 cut(s)	106, 209, 427
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	399
BstBI	TTCGAA	1 cut(s)	54
BstDEI	CTNAG	1 cut(s)	489
BstF5I	GGATG	1 cut(s)	232
BstKTI	GATC	3 cut(s)	109, 212, 430
BstMBI	GATC	3 cut(s)	106, 209, 427
BstMWI	GCNNNNNNNGC	3 cut(s)	244, 253, 482
BstV1I	GCAGC	2 cut(s)	173, 494
BstV2I	GAAGAC	1 cut(s)	156
BstX2I	RGATCY	1 cut(s)	209
BstXI	CCANNNNNNTGG	1 cut(s)	290
BstYI	RGATCY	1 cut(s)	209
Bsu36I	CCTNAGG	1 cut(s)	489
BtsCI	GGATG	1 cut(s)	232
CaiI	CAGNNNCTG	1 cut(s)	488
Cfr13I	GGNCC	2 cut(s)	72, 280
CviAII	CATG	2 cut(s)	29, 290
CviJI	RGCY	7 cut(s)	50, 175, 186, 196, 238, 247, 485
CviKI_1	RGCY	7 cut(s)	50, 175, 186, 196, 238, 247, 485
DdeI	CTNAG	1 cut(s)	489
DpnI	GATC	3 cut(s)	108, 211, 429
DpnII	GATC	3 cut(s)	106, 209, 427
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	2 cut(s)	72, 280
Eco81I	CCTNAGG	1 cut(s)	489
FaeI	CATG	2 cut(s)	32, 293
FaiI	YATR	4 cut(s)	30, 273, 285, 291
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	2 cut(s)	28, 289
FauI	CCCGC	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	187, 483
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	2 cut(s)	187, 483
FspBI	CTAG	1 cut(s)	47
GluI	GCNGC	2 cut(s)	187, 483
GsaI	CCCAGC	1 cut(s)	331
Hin1II	CATG	2 cut(s)	32, 293
HinfI	GANTC	5 cut(s)	56, 215, 332, 446, 513
HphI	GGTGA	5 cut(s)	4, 127, 287, 305, 370
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	6 cut(s)	106, 214, 220, 262, 416, 518
Hpy188III	TCNNGA	2 cut(s)	110, 431
Hpy8I	GTNNAC	1 cut(s)	142
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4V	TGCA	1 cut(s)	256
HpyF10VI	GCNNNNNNNGC	3 cut(s)	244, 253, 482
HpyF3I	CTNAG	1 cut(s)	489
Hsp92II	CATG	2 cut(s)	32, 293
Kzo9I	GATC	3 cut(s)	106, 209, 427
LmnI	GCTCC	2 cut(s)	172, 349
LpnPI	CCDG	5 cut(s)	55, 140, 313, 444, 501
Lsp1109I	GCAGC	2 cut(s)	173, 494
MaeI	CTAG	1 cut(s)	47
MaeIII	GTNAC	2 cut(s)	10, 133
MalI	GATC	3 cut(s)	108, 211, 429
MboI	GATC	3 cut(s)	106, 209, 427
MboII	GAAGA	5 cut(s)	50, 158, 161, 395, 416
MflI	RGATCY	1 cut(s)	209
MlyI	GAGTC	1 cut(s)	224
MslI	CAYNNNNRTG	1 cut(s)	288
Mva1269I	GAATGC	2 cut(s)	256, 423
MwoI	GCNNNNNNNGC	3 cut(s)	244, 253, 482
NdeII	GATC	3 cut(s)	106, 209, 427
NlaIII	CATG	2 cut(s)	32, 293
NlaIV	GGNNCC	3 cut(s)	174, 211, 318
NmuCI	GTSAC	2 cut(s)	10, 133
NspV	TTCGAA	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PctI	GAATGC	2 cut(s)	256, 423
PfeI	GAWTC	3 cut(s)	56, 332, 446
PkrI	GCNGC	2 cut(s)	188, 484
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
PspFI	CCCAGC	1 cut(s)	327
PspN4I	GGNNCC	3 cut(s)	174, 211, 318
PspPI	GGNCC	2 cut(s)	72, 280
PstNI	CAGNNNCTG	1 cut(s)	488
PsuI	RGATCY	1 cut(s)	209
RseI	CAYNNNNRTG	1 cut(s)	288
SatI	GCNGC	2 cut(s)	187, 483
Sau3AI	GATC	3 cut(s)	106, 209, 427
Sau96I	GGNCC	2 cut(s)	72, 280
SchI	GAGTC	1 cut(s)	224
SetI	ASST	8 cut(s)	17, 21, 36, 48, 93, 188, 206, 411
SfuI	TTCGAA	1 cut(s)	54
SinI	GGWCC	2 cut(s)	72, 280
SmiMI	CAYNNNNRTG	1 cut(s)	288
SsiI	CCGC	2 cut(s)	5, 119
SspMI	CTAG	1 cut(s)	47
TaaI	ACNGT	1 cut(s)	139
TaqI	TCGA	3 cut(s)	54, 87, 340
TfiI	GAWTC	3 cut(s)	56, 332, 446
TseFI	GTSAC	2 cut(s)	10, 133
TseI	GCWGC	2 cut(s)	186, 482
Tsp45I	GTSAC	2 cut(s)	10, 133
TspDTI	ATGAA	1 cut(s)	278
VpaK11BI	GGWCC	2 cut(s)	72, 280
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.