Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0011050

Physical Location & Seq

Genomic Coordinates Reverse (-)

32178122 .. 32180337

Gene Structure 2216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033786

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGATGATGGGTTGCATTTGGATTTGAGTTTAGGGTTAGGGTTAGGGTTAGATTTTAGGAATTGTTTTGATGATCCTGATGAAGATGACTTCTTTGTGGGAAGGAGGGTTTCCGGGTTGGAATCTGGTGAGGCGATGTCTTCTGTAGGTAGGGTGGAGCCGTTTGAGAGCTGCGTGAGGCTTATTGGGTTTGGATCCGAGTCTGATGAGGATGAGAATGGGGTTATTGGGCTTGATTTGCATTCGGAGGGTGAGTACGGTGAGGACCATGTTCATGGCCACAATCCGGCCAAAGCCCAAGAATTGAGCCCGCTAGGCAAGGCAAGCCCAGATGTTGTAGAGTCAACCCCAACCCAACACCACCACCTCTGCCATCCCTCCACCACTGCCCAGATCGCGCCGACTCCTCTGTCGGCCCACTACTGTAGGACTAGCACAAGGAAACTATCCCTAGCCAACAACAACAACGATCTAACCACTGCTGCTCGTCGAGGCTTGGTCGTCACAACTCCCCCAAACCAACGGTCGAGATCCATTTCAACCTCCTCCGACCCCAAACTAGCAACCAAGATCCAAATCCCAACCCCTTTAGCTCTGCACGACCCGAAAACCCACCCCTCAGCGCCCCTGCACTCTCCTTCCTCCTCCCATCTACCATCGACGCCTACGGCCAGAGCCCGTCAGACGACAGTGAGAGTGACAGCAACAAAGTTTGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

241

Amino Acids

25.82

Weight (kDa)

5.63

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08139 AT5G08139
fragaria_vesca	FvH4_5g13270
malus_domestica	MD06G1206700.v1.1
prunus_persica	Prupe.5G211100_v2.0.a1
pyrus_communis	pycom14g18010
rosa_chinensis	RchiOBHm_Chr7g0183901
rosa_laevigata	RLG00000005013 RLG00000033786
rosa_multiflora	Rmu_sc0001926.1_g000006 Rmu_sc0004712.1_g000033 Rmu_sc0007533.1_g000005 Rmu_sc0012562.1_g000017
rosa_roxburghii	Rroxscaffold_3G00270100
rosa_rugosa	Rorug06G0461300
rosa_samantha	Rh7AG062200 Rh7BG062400 Rh7CG063800 Rh7DG062200
rosa_wichuraiana	Rw7G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	409
AccII	CGCG	1 cut(s)	398
AciI	CCGC	1 cut(s)	311
AclWI	GGATC	5 cut(s)	68, 189, 202, 525, 565
AcoI	YGGCCR	3 cut(s)	277, 288, 669
AcyI	GRCGYC	1 cut(s)	662
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	1 cut(s)	286
AgsI	TTSAA	1 cut(s)	540
AluBI	AGCT	2 cut(s)	171, 593
AluI	AGCT	2 cut(s)	171, 593
AlwI	GGATC	5 cut(s)	68, 189, 202, 525, 565
AoxI	GGCC	4 cut(s)	277, 288, 414, 669
ApeKI	GCWGC	2 cut(s)	171, 482
ArsI	GACNNNNNNTTYG	2 cut(s)	509, 541
AspLEI	GCGC	2 cut(s)	400, 625
AspS9I	GGNCC	2 cut(s)	265, 415
AsuC2I	CCSGG	1 cut(s)	115
AsuHPI	GGTGA	3 cut(s)	140, 263, 272
AvaII	GGWCC	1 cut(s)	265
BalI	TGGCCA	1 cut(s)	279
BamHI	GGATCC	1 cut(s)	194
BanII	GRGCYC	2 cut(s)	311, 679
BbsI	GAAGAC	1 cut(s)	132
BbvCI	CCTCAGC	1 cut(s)	619
BbvI	GCAGC	2 cut(s)	158, 469
BccI	CCATC	4 cut(s)	2, 381, 657, 664
BceAI	ACGGC	2 cut(s)	145, 684
BcnI	CCSGG	1 cut(s)	115
BfaI	CTAG	4 cut(s)	314, 432, 452, 560
BfmI	CTRYAG	2 cut(s)	144, 424
BfoI	RGCGCY	1 cut(s)	626
BglI	GCCNNNNNGGC	1 cut(s)	315
BisI	GCNGC	2 cut(s)	172, 483
BlsI	GCNGC	2 cut(s)	173, 484
Bme1390I	CCNGG	1 cut(s)	115
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	2 cut(s)	265, 415
BmiI	GGNNCC	2 cut(s)	159, 196
BmrFI	CCNGG	1 cut(s)	115
BpiI	GAAGAC	1 cut(s)	132
Bpu10I	CCTNAGC	1 cut(s)	619
BpuMI	CCSGG	1 cut(s)	115
BsaBI	GATNNNNATC	1 cut(s)	575
BsaHI	GRCGYC	1 cut(s)	662
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse8I	GATNNNNATC	1 cut(s)	575
BseGI	GGATG	3 cut(s)	10, 217, 373
BseJI	GATNNNNATC	1 cut(s)	575
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseMII	CTCAG	1 cut(s)	633
BseRI	GAGGAG	3 cut(s)	396, 535, 634
BseXI	GCAGC	2 cut(s)	158, 469
BsgI	GTGCAG	2 cut(s)	581, 614
Bsh1236I	CGCG	1 cut(s)	398
Bsh1285I	CGRYCG	1 cut(s)	527
BshFI	GGCC	4 cut(s)	279, 290, 416, 671
BsiEI	CGRYCG	1 cut(s)	527
BsiSI	CCGG	2 cut(s)	114, 287
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	4 cut(s)	279, 290, 416, 671
Bsp1286I	GDGCHC	2 cut(s)	311, 679
Bsp143I	GATC	6 cut(s)	73, 194, 393, 469, 530, 570
BspACI	CCGC	1 cut(s)	311
BspANI	GGCC	4 cut(s)	279, 290, 416, 671
BspCNI	CTCAG	1 cut(s)	632
BspFNI	CGCG	1 cut(s)	398
BspLI	GGNNCC	2 cut(s)	159, 196
BspPI	GGATC	5 cut(s)	68, 189, 202, 525, 565
BssMI	GATC	6 cut(s)	73, 194, 393, 469, 530, 570
BssNI	GRCGYC	1 cut(s)	662
Bst4CI	ACNGT	4 cut(s)	260, 425, 525, 691
BstACI	GRCGYC	1 cut(s)	662
BstC8I	GCNNGC	2 cut(s)	311, 325
BstDEI	CTNAG	1 cut(s)	619
BstF5I	GGATG	3 cut(s)	10, 217, 373
BstFNI	CGCG	1 cut(s)	398
BstH2I	RGCGCY	1 cut(s)	626
BstHHI	GCGC	2 cut(s)	400, 625
BstKTI	GATC	6 cut(s)	76, 197, 396, 472, 533, 573
BstMBI	GATC	6 cut(s)	73, 194, 393, 469, 530, 570
BstMCI	CGRYCG	1 cut(s)	527
BstMWI	GCNNNNNNNGC	4 cut(s)	238, 315, 324, 395
BstSCI	CCNGG	1 cut(s)	113
BstSFI	CTRYAG	2 cut(s)	144, 424
BstUI	CGCG	1 cut(s)	398
BstV1I	GCAGC	2 cut(s)	158, 469
BstV2I	GAAGAC	1 cut(s)	132
BstX2I	RGATCY	3 cut(s)	194, 530, 570
BstXI	CCANNNNNNTGG	1 cut(s)	275
BstYI	RGATCY	3 cut(s)	194, 530, 570
BsuRI	GGCC	4 cut(s)	279, 290, 416, 671
BtgZI	GCGATG	1 cut(s)	149
BtsCI	GGATG	3 cut(s)	10, 217, 373
BtsI	GCAGTG	2 cut(s)	384, 477
BtsIMutI	CAGTG	3 cut(s)	384, 477, 696
Cac8I	GCNNGC	2 cut(s)	311, 325
CfoI	GCGC	2 cut(s)	400, 625
Cfr13I	GGNCC	2 cut(s)	265, 415
CseI	GACGC	1 cut(s)	670
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	2 cut(s)	269, 275
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	1 cut(s)	619
DpnI	GATC	6 cut(s)	75, 196, 395, 471, 532, 572
DpnII	GATC	6 cut(s)	73, 194, 393, 469, 530, 570
DrdI	GACNNNNNNGTC	1 cut(s)	409
DseDI	GACNNNNNNGTC	1 cut(s)	409
EaeI	YGGCCR	3 cut(s)	277, 288, 669
Eco24I	GRGCYC	2 cut(s)	311, 679
Eco47I	GGWCC	1 cut(s)	265
EcoT38I	GRGCYC	2 cut(s)	311, 679
FaeI	CATG	2 cut(s)	272, 278
FaiI	YATR	2 cut(s)	270, 276
FatI	CATG	2 cut(s)	268, 274
FauI	CCCGC	1 cut(s)	318
Fnu4HI	GCNGC	2 cut(s)	172, 483
FokI	GGATG	3 cut(s)	17, 224, 360
FriOI	GRGCYC	2 cut(s)	311, 679
Fsp4HI	GCNGC	2 cut(s)	172, 483
FspBI	CTAG	4 cut(s)	314, 432, 452, 560
GlaI	GCGC	2 cut(s)	399, 624
GluI	GCNGC	2 cut(s)	172, 483
HaeII	RGCGCY	1 cut(s)	626
HaeIII	GGCC	4 cut(s)	279, 290, 416, 671
HapII	CCGG	2 cut(s)	114, 287
HgaI	GACGC	1 cut(s)	670
HhaI	GCGC	2 cut(s)	400, 625
Hin1I	GRCGYC	1 cut(s)	662
Hin1II	CATG	2 cut(s)	272, 278
Hin6I	GCGC	2 cut(s)	398, 623
HinP1I	GCGC	2 cut(s)	398, 623
HincII	GTYRAC	1 cut(s)	345
HindII	GTYRAC	1 cut(s)	345
HinfI	GANTC	4 cut(s)	122, 200, 341, 403
HpaII	CCGG	2 cut(s)	114, 287
HphI	GGTGA	3 cut(s)	140, 263, 272
Hpy166II	GTNNAC	1 cut(s)	345
Hpy188I	TCNGA	5 cut(s)	199, 205, 247, 550, 684
Hpy188III	TCNNGA	2 cut(s)	77, 528
Hpy8I	GTNNAC	1 cut(s)	345
Hpy99I	CGWCG	2 cut(s)	492, 664
HpyAV	CCTTC	2 cut(s)	96, 648
HpyCH4III	ACNGT	4 cut(s)	260, 425, 525, 691
HpyCH4V	TGCA	4 cut(s)	16, 241, 598, 631
HpyF10VI	GCNNNNNNNGC	4 cut(s)	238, 315, 324, 395
HpyF3I	CTNAG	1 cut(s)	619
Hsp92I	GRCGYC	1 cut(s)	662
Hsp92II	CATG	2 cut(s)	272, 278
HspAI	GCGC	2 cut(s)	398, 623
Kzo9I	GATC	6 cut(s)	73, 194, 393, 469, 530, 570
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	8 cut(s)	90, 111, 127, 300, 342, 404, 641, 685
Lsp1109I	GCAGC	2 cut(s)	158, 469
MaeI	CTAG	4 cut(s)	314, 432, 452, 560
MaeIII	GTNAC	2 cut(s)	502, 697
MalI	GATC	6 cut(s)	75, 196, 395, 471, 532, 572
MboI	GATC	6 cut(s)	73, 194, 393, 469, 530, 570
MboII	GAAGA	2 cut(s)	95, 132
MflI	RGATCY	3 cut(s)	194, 530, 570
MhlI	GDGCHC	2 cut(s)	311, 679
MlsI	TGGCCA	1 cut(s)	279
MluCI	AATT	2 cut(s)	61, 302
MluNI	TGGCCA	1 cut(s)	279
MlyI	GAGTC	3 cut(s)	209, 350, 397
MmeI	TCCRAC	2 cut(s)	99, 573
Mox20I	TGGCCA	1 cut(s)	279
MscI	TGGCCA	1 cut(s)	279
MslI	CAYNNNNRTG	1 cut(s)	273
Msp20I	TGGCCA	1 cut(s)	279
MspI	CCGG	2 cut(s)	114, 287
MspR9I	CCNGG	1 cut(s)	115
Mva1269I	GAATGC	1 cut(s)	241
MvnI	CGCG	1 cut(s)	398
MwoI	GCNNNNNNNGC	4 cut(s)	238, 315, 324, 395
NciI	CCSGG	1 cut(s)	115
NdeII	GATC	6 cut(s)	73, 194, 393, 469, 530, 570
NlaIII	CATG	2 cut(s)	272, 278
NlaIV	GGNNCC	2 cut(s)	159, 196
NmuCI	GTSAC	2 cut(s)	502, 697
PctI	GAATGC	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	2 cut(s)	173, 484
PleI	GAGTC	3 cut(s)	208, 349, 397
PpsI	GAGTC	3 cut(s)	208, 349, 397
PspN4I	GGNNCC	2 cut(s)	159, 196
PspPI	GGNCC	2 cut(s)	265, 415
PsuI	RGATCY	3 cut(s)	194, 530, 570
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
RseI	CAYNNNNRTG	1 cut(s)	273
SatI	GCNGC	2 cut(s)	172, 483
Sau3AI	GATC	6 cut(s)	73, 194, 393, 469, 530, 570
Sau96I	GGNCC	2 cut(s)	265, 415
SchI	GAGTC	3 cut(s)	209, 350, 397
ScrFI	CCNGG	1 cut(s)	115
SduI	GDGCHC	2 cut(s)	311, 679
SetI	ASST	5 cut(s)	151, 173, 369, 545, 595
SfcI	CTRYAG	2 cut(s)	144, 424
SinI	GGWCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	273
Sse9I	AATT	2 cut(s)	61, 302
SsiI	CCGC	1 cut(s)	311
SspMI	CTAG	4 cut(s)	314, 432, 452, 560
StyD4I	CCNGG	1 cut(s)	113
TaaI	ACNGT	4 cut(s)	260, 425, 525, 691
TaqI	TCGA	3 cut(s)	490, 527, 659
TasI	AATT	2 cut(s)	61, 302
TfiI	GAWTC	1 cut(s)	122
TscAI	CASTG	3 cut(s)	391, 484, 696
TseFI	GTSAC	2 cut(s)	502, 697
TseI	GCWGC	2 cut(s)	171, 482
Tsp45I	GTSAC	2 cut(s)	502, 697
TspDTI	ATGAA	2 cut(s)	96, 263
TspRI	CASTG	3 cut(s)	391, 484, 696
VpaK11BI	GGWCC	1 cut(s)	265
XspI	CTAG	4 cut(s)	314, 432, 452, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.