Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004652

Physical Location & Seq

Genomic Coordinates Forward (+)

2665899 .. 2667261

Gene Structure 1363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G08290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTCGTATCTTCTTCCACATCTGCACTCCGGTTGGGCTGTTGATCAGTCGATTCTGGCCGAGGAAGAGCGTCTCGTCGTCATTCGTTTCGGCCATGACTGGGATGAGACCTGTATGCAGATGGATGAGGTGCTTGCGTCTGTTGCTGAGACGATTAAGAACTTTGCAGTCATTTATCTGGTGGACATCACTGAGGTTCCAGACTTCAACACCATGTACGAGCTGTACGATCCTTCTACGGTCATGTTCTTCTTCAGGAACAAGCACATCATGATCGATCTTGGAACTGGTAACAACAACAAGATCAACTGGGCTCTCAAGGACAAGCAGGAGTTCATTGATATCATTGAGACTGTCTACCGTGGTGCAAGGAAGGGTCGTGGGTTGGTGATTGCTCCAAAAGATTACTCCACCAAATACCGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0065003 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DIM1

Protein Analysis

142

Amino Acids

16.59

Weight (kDa)

5.14

Isoelectric Point (pI)

30.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIM1	PF02966	4 - 136	1.7e-68	Mitosis protein DIM1
Thioredoxin	PF00085	17 - 101	6.7e-06	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08290 AT5G08290
fragaria_vesca	FvH4_4g37070 FvH4_4g37070
malus_domestica	MD13G1003900.v1.1
prunus_persica	Prupe.1G348600_v2.0.a1 Prupe.1G348600_v2.0.a1 Prupe.1G348600_v2.0.a1 Prupe.1G348600_v2.0.a1 Prupe.1G348600_v2.0.a1 Prupe.6G164200_v2.0.a1
pyrus_communis	pycom13g00330
rosa_chinensis	RchiOBHm_Chr4g0446821 RchiOBHm_Chr5g0009351
rosa_laevigata	RLG00000005627 RLG00000031654
rosa_multiflora	Rmu_sc0001753.1_g000020 Rmu_sc0002711.1_g000022 Rmu_sc0009480.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066740 Rroxscaffold_1G00067440 Rroxscaffold_5G00387190
rosa_rugosa	Rorug04G0441900
rosa_samantha	Rh4AG436300 Rh4DG444100 Rh5AG072800 Rh5BG069100 Rh5CG081700 Rh5DG069400
rosa_wichuraiana	Rw4G037330 Rw5G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	357
AclWI	GGATC	1 cut(s)	224
AcoI	YGGCCR	2 cut(s)	57, 91
AcuI	CTGAAG	1 cut(s)	238
AfaI	GTAC	2 cut(s)	218, 227
AfiI	CCNNNNNNNGG	1 cut(s)	100
AgsI	TTSAA	1 cut(s)	208
AluBI	AGCT	1 cut(s)	223
AluI	AGCT	1 cut(s)	223
Alw26I	GTCTC	4 cut(s)	77, 101, 143, 344
AlwI	GGATC	1 cut(s)	224
AoxI	GGCC	2 cut(s)	57, 91
AsuHPI	GGTGA	1 cut(s)	400
BanII	GRGCYC	1 cut(s)	316
BccI	CCATC	1 cut(s)	115
BclI	TGATCA	1 cut(s)	43
BcoDI	GTCTC	4 cut(s)	77, 101, 143, 344
BmiI	GGNNCC	1 cut(s)	198
BmrI	ACTGGG	2 cut(s)	109, 319
BmuI	ACTGGG	2 cut(s)	109, 319
BpuEI	CTTGAG	1 cut(s)	302
Bsa29I	ATCGAT	1 cut(s)	276
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	60, 361
BsaWI	WCCGGW	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse1I	ACTGG	3 cut(s)	104, 292, 314
BseCI	ATCGAT	1 cut(s)	276
BseDI	CCNNGG	2 cut(s)	60, 361
BseGI	GGATG	2 cut(s)	109, 130
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMII	CTCAG	2 cut(s)	138, 183
BseNI	ACTGG	3 cut(s)	104, 292, 314
BsgI	GTGCAG	1 cut(s)	8
BshFI	GGCC	2 cut(s)	59, 93
BshVI	ATCGAT	1 cut(s)	276
BsiSI	CCGG	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	4 cut(s)	77, 101, 143, 344
BsmBI	CGTCTC	2 cut(s)	77, 143
BsnI	GGCC	2 cut(s)	59, 93
Bso31I	GGTCTC	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	5 cut(s)	43, 229, 273, 277, 303
BspANI	GGCC	2 cut(s)	59, 93
BspCNI	CTCAG	2 cut(s)	139, 184
BspDI	ATCGAT	1 cut(s)	276
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	198
BspPI	GGATC	1 cut(s)	224
BspQI	GCTCTTC	1 cut(s)	60
BspTNI	GGTCTC	1 cut(s)	101
BsrI	ACTGG	3 cut(s)	104, 292, 314
BssECI	CCNNGG	2 cut(s)	60, 361
BssMI	GATC	5 cut(s)	43, 229, 273, 277, 303
Bst4CI	ACNGT	4 cut(s)	241, 355, 362, 422
Bst6I	CTCTTC	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	147, 192
BstDSI	CCRYGG	1 cut(s)	361
BstF5I	GGATG	2 cut(s)	109, 130
BstKTI	GATC	5 cut(s)	46, 232, 276, 280, 306
BstMAI	GTCTC	4 cut(s)	77, 101, 143, 344
BstMBI	GATC	5 cut(s)	43, 229, 273, 277, 303
BstMWI	GCNNNNNNNGC	1 cut(s)	143
Bsu15I	ATCGAT	1 cut(s)	276
BsuRI	GGCC	2 cut(s)	59, 93
BsuTUI	ATCGAT	1 cut(s)	276
BtgI	CCRYGG	1 cut(s)	361
BtsCI	GGATG	2 cut(s)	109, 130
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	135
CciI	TCATGA	1 cut(s)	270
ClaI	ATCGAT	1 cut(s)	276
CseI	GACGC	2 cut(s)	59, 126
Csp6I	GTAC	2 cut(s)	217, 226
CviAII	CATG	4 cut(s)	95, 214, 244, 271
CviJI	RGCY	5 cut(s)	38, 59, 93, 223, 314
CviKI_1	RGCY	5 cut(s)	38, 59, 93, 223, 314
CviQI	GTAC	2 cut(s)	217, 226
DdeI	CTNAG	2 cut(s)	147, 192
DpnI	GATC	5 cut(s)	45, 231, 275, 279, 305
DpnII	GATC	5 cut(s)	43, 229, 273, 277, 303
EaeI	YGGCCR	2 cut(s)	57, 91
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	316
Eco31I	GGTCTC	1 cut(s)	101
Eco32I	GATATC	1 cut(s)	343
Eco57I	CTGAAG	1 cut(s)	238
EcoRV	GATATC	1 cut(s)	343
EcoT38I	GRGCYC	1 cut(s)	316
Esp3I	CGTCTC	2 cut(s)	77, 143
FaeI	CATG	4 cut(s)	98, 217, 247, 274
FaiI	YATR	5 cut(s)	96, 116, 215, 245, 272
FatI	CATG	4 cut(s)	94, 213, 243, 270
FbaI	TGATCA	1 cut(s)	43
FblI	GTMKAC	1 cut(s)	357
FokI	GGATG	2 cut(s)	116, 137
FriOI	GRGCYC	1 cut(s)	316
HaeIII	GGCC	2 cut(s)	59, 93
HapII	CCGG	1 cut(s)	30
HgaI	GACGC	2 cut(s)	59, 126
Hin1II	CATG	4 cut(s)	98, 217, 247, 274
HinfI	GANTC	1 cut(s)	52
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	2 cut(s)	184, 358
Hpy188III	TCNNGA	3 cut(s)	200, 256, 271
Hpy8I	GTNNAC	2 cut(s)	184, 358
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	2 cut(s)	243, 367
HpyCH4III	ACNGT	4 cut(s)	241, 355, 362, 422
HpyCH4V	TGCA	4 cut(s)	25, 118, 167, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	2 cut(s)	147, 192
Hsp92II	CATG	4 cut(s)	98, 217, 247, 274
Ksp22I	TGATCA	1 cut(s)	43
Kzo9I	GATC	5 cut(s)	43, 229, 273, 277, 303
LguI	GCTCTTC	1 cut(s)	60
LmnI	GCTCC	1 cut(s)	400
MaeIII	GTNAC	2 cut(s)	290, 422
MalI	GATC	5 cut(s)	45, 231, 275, 279, 305
MboI	GATC	5 cut(s)	43, 229, 273, 277, 303
MboII	GAAGA	4 cut(s)	5, 77, 241, 244
MhlI	GDGCHC	1 cut(s)	316
MnlI	CCTC	3 cut(s)	55, 121, 187
MseI	TTAA	1 cut(s)	156
MspI	CCGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	143
NdeII	GATC	5 cut(s)	43, 229, 273, 277, 303
NlaIII	CATG	4 cut(s)	98, 217, 247, 274
NlaIV	GGNNCC	1 cut(s)	198
NmeAIII	GCCGAG	1 cut(s)	85
PagI	TCATGA	1 cut(s)	270
PciSI	GCTCTTC	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	52
PspN4I	GGNNCC	1 cut(s)	198
RsaI	GTAC	2 cut(s)	218, 227
RsaNI	GTAC	2 cut(s)	217, 226
SapI	GCTCTTC	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	156
Sau3AI	GATC	5 cut(s)	43, 229, 273, 277, 303
SduI	GDGCHC	1 cut(s)	316
SetI	ASST	4 cut(s)	113, 132, 198, 225
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
TaaI	ACNGT	4 cut(s)	241, 355, 362, 422
TaqI	TCGA	2 cut(s)	50, 276
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	1 cut(s)	196
TspDTI	ATGAA	1 cut(s)	325
TspRI	CASTG	1 cut(s)	196
XmiI	GTMKAC	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.