Rh4AG436300

Thioredoxin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0004652
Physical Location & Seq
Forward (+)
72956151 .. 72958692
2542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG436300.1

Sequence Viewer

Length: 333 bp
ATGACCTGTATCATATATGTGCAGATGGATGAAGTACTAGCATCAGTTGCTGACAAAATTAAAAACTTTGCTGTCATTTACCTTGTGGACATTTCAGAGGTTCCTGATTTCAACACAATGTATGAGCTGTATGACCCATCCACAGTTATGTTCTTTTTCAGAAACAAGCACATTATGATTGACCTTGGCACTGGGAACAACAACAAGATTAACTGGGCTCTCAAGGACAAGCAAGAGTTCATTGACATTGTGGAGACAGTGTACCGTGGTGCAAGGAAGGGGCGTGGTCTGGTGATTGCTCCCAAGGATTACTCCACCAAGTACCGCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
DIM1

Protein Analysis

110

Amino Acids

12.83

Weight (kDa)

6.56

Isoelectric Point (pI)

10.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIM1 PF02966 7 - 104 7.7e-49 Mitosis protein DIM1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 325
AfaI GTAC 3 cut(s) 36, 263, 323
AgsI TTSAA 1 cut(s) 112
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
Alw26I GTCTC 1 cut(s) 248
AlwNI CAGNNNCTG 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 304
BanII GRGCYC 1 cut(s) 220
BccI CCATC 2 cut(s) 19, 145
BcoDI GTCTC 1 cut(s) 248
BfaI CTAG 1 cut(s) 38
BmcAI AGTACT 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 102
BmrI ACTGGG 2 cut(s) 201, 223
BmsI GCATC 1 cut(s) 50
BmuI ACTGGG 2 cut(s) 201, 223
BpuEI CTTGAG 1 cut(s) 206
BsaJI CCNNGG 3 cut(s) 184, 265, 303
BsaXI ACNNNNNCTCC 2 cut(s) 245, 275
Bse1I ACTGG 2 cut(s) 196, 218
BseDI CCNNGG 3 cut(s) 184, 265, 303
BseGI GGATG 2 cut(s) 34, 137
BseNI ACTGG 2 cut(s) 196, 218
BsgI GTGCAG 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 248
Bsp1286I GDGCHC 1 cut(s) 220
BspACI CCGC 1 cut(s) 325
BspLI GGNNCC 1 cut(s) 102
BsrI ACTGG 2 cut(s) 196, 218
BssECI CCNNGG 3 cut(s) 184, 265, 303
BssT1I CCWWGG 2 cut(s) 184, 303
Bst4CI ACNGT 3 cut(s) 145, 259, 266
BstAPI GCANNNNNTGC 1 cut(s) 47
BstDSI CCRYGG 1 cut(s) 265
BstF5I GGATG 2 cut(s) 34, 137
BstMAI GTCTC 1 cut(s) 248
BstMWI GCNNNNNNNGC 1 cut(s) 47
BtgI CCRYGG 1 cut(s) 265
BtsCI GGATG 2 cut(s) 34, 137
BtsIMutI CAGTG 2 cut(s) 189, 264
CaiI CAGNNNCTG 1 cut(s) 50
Csp6I GTAC 3 cut(s) 35, 262, 322
CviJI RGCY 2 cut(s) 127, 218
CviKI_1 RGCY 2 cut(s) 127, 218
CviQI GTAC 3 cut(s) 35, 262, 322
Eco130I CCWWGG 2 cut(s) 184, 303
Eco24I GRGCYC 1 cut(s) 220
EcoT14I CCWWGG 2 cut(s) 184, 303
EcoT38I GRGCYC 1 cut(s) 220
ErhI CCWWGG 2 cut(s) 184, 303
FaiI YATR 7 cut(s) 14, 16, 18, 123, 132, 149, 176
FokI GGATG 2 cut(s) 41, 124
FriOI GRGCYC 1 cut(s) 220
FspBI CTAG 1 cut(s) 38
HphI GGTGA 1 cut(s) 304
Hpy166II GTNNAC 2 cut(s) 88, 262
Hpy188I TCNGA 2 cut(s) 97, 161
Hpy188III TCNNGA 1 cut(s) 104
Hpy8I GTNNAC 2 cut(s) 88, 262
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 3 cut(s) 145, 259, 266
HpyCH4V TGCA 2 cut(s) 22, 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
LmnI GCTCC 1 cut(s) 304
LpnPI CCDG 5 cut(s) 19, 117, 177, 199, 275
LweI GCATC 1 cut(s) 50
MaeI CTAG 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 220
MluCI AATT 1 cut(s) 57
MnlI CCTC 1 cut(s) 91
MseI TTAA 2 cut(s) 60, 210
MslI CAYNNNNRTG 2 cut(s) 17, 146
MwoI GCNNNNNNNGC 1 cut(s) 47
NlaIV GGNNCC 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 102
PstNI CAGNNNCTG 1 cut(s) 50
RsaI GTAC 3 cut(s) 36, 263, 323
RsaNI GTAC 3 cut(s) 35, 262, 322
RseI CAYNNNNRTG 2 cut(s) 17, 146
SaqAI TTAA 2 cut(s) 60, 210
ScaI AGTACT 1 cut(s) 36
SduI GDGCHC 1 cut(s) 220
SetI ASST 5 cut(s) 8, 84, 102, 129, 186
SfaNI GCATC 1 cut(s) 50
SmiMI CAYNNNNRTG 2 cut(s) 17, 146
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 1 cut(s) 57
SsiI CCGC 1 cut(s) 325
SspMI CTAG 1 cut(s) 38
StyI CCWWGG 2 cut(s) 184, 303
TaaI ACNGT 3 cut(s) 145, 259, 266
TasI AATT 1 cut(s) 57
TatI WGTACW 1 cut(s) 34
Tru1I TTAA 2 cut(s) 60, 210
Tru9I TTAA 2 cut(s) 60, 210
TscAI CASTG 2 cut(s) 196, 264
TspDTI ATGAA 2 cut(s) 45, 229
TspRI CASTG 2 cut(s) 196, 264
XspI CTAG 1 cut(s) 38
ZrmI AGTACT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.