Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004652

Physical Location & Seq

Genomic Coordinates Reverse (-)

7126974 .. 7128426

Gene Structure 1453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031654

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTCGTATCTGCTTCCACATCTTCACTCCGGCTGGGCCGTCGACCAGGCTATTCTCGCCGAGGAGGAGCGTCTCGTCGTCATCCGGTTCGGCCACGATTGGGATGAGACTTGTATGCAGATGGATGAAGTGCTAGCAAATGTTGCAGAGACTCTTAAGAACTTTGCTGTGATTTACCTTGTGGACATCACTGAGGTTCCTGATTTCAACACCATGTATGAGTTGTATGACCCTTCAACAGTCATGTTCTTCTTCAGAAACAAGCACATTATGATTGATCTCGGCACTGGGAACAACAACAAGATCAACTGGGCTCTCAAGGACAAGCAGGAGTTCATTGACGTTGTGGAGACTGTGTACCGTGGCGCGAGGAAGGGACGTGGTCTGGTGATTGCTCCCAAGGATTACTCAACCAAGTACCGCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005681 GO:0005682 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0065003 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DIM1

Protein Analysis

143

Amino Acids

16.57

Weight (kDa)

5.14

Isoelectric Point (pI)

23.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIM1	PF02966	4 - 136	1.7e-68	Mitosis protein DIM1
Thioredoxin	PF00085	17 - 101	6.3e-06	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08290 AT5G08290
fragaria_vesca	FvH4_4g37070 FvH4_4g37070
malus_domestica	MD13G1003900.v1.1
prunus_persica	Prupe.1G348600_v2.0.a1 Prupe.1G348600_v2.0.a1 Prupe.1G348600_v2.0.a1 Prupe.1G348600_v2.0.a1 Prupe.1G348600_v2.0.a1 Prupe.6G164200_v2.0.a1
pyrus_communis	pycom13g00330
rosa_chinensis	RchiOBHm_Chr4g0446821 RchiOBHm_Chr5g0009351
rosa_laevigata	RLG00000005627 RLG00000031654
rosa_multiflora	Rmu_sc0001753.1_g000020 Rmu_sc0002711.1_g000022 Rmu_sc0009480.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066740 Rroxscaffold_1G00067440 Rroxscaffold_5G00387190
rosa_rugosa	Rorug04G0441900
rosa_samantha	Rh4AG436300 Rh4DG444100 Rh5AG072800 Rh5BG069100 Rh5CG081700 Rh5DG069400
rosa_wichuraiana	Rw4G037330 Rw5G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	42
AccII	CGCG	1 cut(s)	368
AciI	CCGC	1 cut(s)	421
AcoI	YGGCCR	1 cut(s)	91
AcuI	CTGAAG	1 cut(s)	238
AfaI	GTAC	2 cut(s)	359, 419
AfiI	CCNNNNNNNGG	1 cut(s)	100
AflII	CTTAAG	1 cut(s)	155
AgsI	TTSAA	2 cut(s)	208, 237
AjiI	CACGTC	1 cut(s)	380
AjnI	CCWGG	1 cut(s)	45
Alw26I	GTCTC	4 cut(s)	77, 101, 143, 344
AoxI	GGCC	2 cut(s)	36, 91
AspLEI	GCGC	1 cut(s)	368
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	400
AsuNHI	GCTAGC	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	316
BccI	CCATC	1 cut(s)	115
BceAI	ACGGC	1 cut(s)	23
BciT130I	CCWGG	1 cut(s)	47
BcoDI	GTCTC	4 cut(s)	77, 101, 143, 344
BfaI	CTAG	1 cut(s)	134
BfrI	CTTAAG	1 cut(s)	155
Bme1390I	CCNGG	1 cut(s)	47
BmgBI	CACGTC	1 cut(s)	380
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	1 cut(s)	47
BmrI	ACTGGG	2 cut(s)	297, 319
BmtI	GCTAGC	1 cut(s)	137
BmuI	ACTGGG	2 cut(s)	297, 319
BpuEI	CTTGAG	1 cut(s)	302
BsaJI	CCNNGG	3 cut(s)	60, 361, 399
BsaWI	WCCGGW	1 cut(s)	84
BsaXI	ACNNNNNCTCC	2 cut(s)	341, 371
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse1I	ACTGG	2 cut(s)	292, 314
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	3 cut(s)	60, 361, 399
BseGI	GGATG	3 cut(s)	81, 109, 130
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	2 cut(s)	292, 314
BseRI	GAGGAG	2 cut(s)	77, 80
BseYI	CCCAGC	1 cut(s)	33
Bsh1236I	CGCG	1 cut(s)	368
BshFI	GGCC	2 cut(s)	38, 93
BsiSI	CCGG	2 cut(s)	30, 85
BslFI	GGGAC	1 cut(s)	390
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	4 cut(s)	77, 101, 143, 344
BsmBI	CGTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	390
BsnI	GGCC	2 cut(s)	38, 93
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	2 cut(s)	277, 303
BspACI	CCGC	1 cut(s)	421
BspANI	GGCC	2 cut(s)	38, 93
BspCNI	CTCAG	1 cut(s)	184
BspFNI	CGCG	1 cut(s)	368
BspLI	GGNNCC	1 cut(s)	198
BspOI	GCTAGC	1 cut(s)	137
BspTI	CTTAAG	1 cut(s)	155
BsrI	ACTGG	2 cut(s)	292, 314
BssECI	CCNNGG	3 cut(s)	60, 361, 399
BssMI	GATC	2 cut(s)	277, 303
BssT1I	CCWWGG	1 cut(s)	399
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	3 cut(s)	241, 355, 362
BstAFI	CTTAAG	1 cut(s)	155
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	1 cut(s)	192
BstDSI	CCRYGG	1 cut(s)	361
BstF5I	GGATG	3 cut(s)	81, 109, 130
BstFNI	CGCG	1 cut(s)	368
BstHHI	GCGC	1 cut(s)	368
BstKTI	GATC	2 cut(s)	280, 306
BstMAI	GTCTC	4 cut(s)	77, 101, 143, 344
BstMBI	GATC	2 cut(s)	277, 303
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 143
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	45
BstUI	CGCG	1 cut(s)	368
BsuRI	GGCC	2 cut(s)	38, 93
BtgI	CCRYGG	1 cut(s)	361
BtrI	CACGTC	1 cut(s)	380
BtsCI	GGATG	3 cut(s)	81, 109, 130
BtsIMutI	CAGTG	2 cut(s)	189, 285
Cac8I	GCNNGC	1 cut(s)	135
CfoI	GCGC	1 cut(s)	368
Cfr13I	GGNCC	1 cut(s)	36
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	2 cut(s)	358, 418
CviAII	CATG	2 cut(s)	214, 244
CviJI	RGCY	5 cut(s)	33, 38, 50, 93, 314
CviKI_1	RGCY	5 cut(s)	33, 38, 50, 93, 314
CviQI	GTAC	2 cut(s)	358, 418
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	2 cut(s)	279, 305
DpnII	GATC	2 cut(s)	277, 303
EaeI	YGGCCR	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	316
Eco57I	CTGAAG	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	399
Esp3I	CGTCTC	1 cut(s)	77
FaeI	CATG	2 cut(s)	217, 247
FaiI	YATR	6 cut(s)	116, 215, 219, 228, 245, 272
FaqI	GGGAC	1 cut(s)	390
FatI	CATG	2 cut(s)	213, 243
FblI	GTMKAC	1 cut(s)	42
FokI	GGATG	3 cut(s)	68, 116, 137
FriOI	GRGCYC	1 cut(s)	316
FspBI	CTAG	1 cut(s)	134
GlaI	GCGC	1 cut(s)	367
GsaI	CCCAGC	1 cut(s)	37
HaeIII	GGCC	2 cut(s)	38, 93
HapII	CCGG	2 cut(s)	30, 85
HgaI	GACGC	1 cut(s)	59
HhaI	GCGC	1 cut(s)	368
Hin1II	CATG	2 cut(s)	217, 247
Hin6I	GCGC	1 cut(s)	366
HinP1I	GCGC	1 cut(s)	366
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	1 cut(s)	151
HpaII	CCGG	2 cut(s)	30, 85
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	3 cut(s)	43, 184, 358
Hpy188I	TCNGA	1 cut(s)	257
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	3 cut(s)	43, 184, 358
Hpy99I	CGWCG	2 cut(s)	44, 80
HpyAV	CCTTC	2 cut(s)	243, 367
HpyCH4III	ACNGT	3 cut(s)	241, 355, 362
HpyCH4IV	ACGT	2 cut(s)	342, 379
HpyCH4V	TGCA	2 cut(s)	118, 146
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 143
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	2 cut(s)	342, 379
Hsp92II	CATG	2 cut(s)	217, 247
HspAI	GCGC	1 cut(s)	366
Kzo9I	GATC	2 cut(s)	277, 303
LmnI	GCTCC	2 cut(s)	67, 400
MaeI	CTAG	1 cut(s)	134
MaeII	ACGT	2 cut(s)	342, 379
MalI	GATC	2 cut(s)	279, 305
MboI	GATC	2 cut(s)	277, 303
MboII	GAAGA	3 cut(s)	14, 241, 244
MhlI	GDGCHC	1 cut(s)	316
MlyI	GAGTC	1 cut(s)	145
MnlI	CCTC	4 cut(s)	55, 58, 187, 363
MseI	TTAA	1 cut(s)	156
MspCI	CTTAAG	1 cut(s)	155
MspI	CCGG	2 cut(s)	30, 85
MspR9I	CCNGG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	47
MvnI	CGCG	1 cut(s)	368
MwoI	GCNNNNNNNGC	2 cut(s)	56, 143
NdeII	GATC	2 cut(s)	277, 303
NheI	GCTAGC	1 cut(s)	133
NlaIII	CATG	2 cut(s)	217, 247
NlaIV	GGNNCC	1 cut(s)	198
NmeAIII	GCCGAG	2 cut(s)	85, 261
PflFI	GACNNNGTC	1 cut(s)	381
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
Psp6I	CCWGG	1 cut(s)	45
PspFI	CCCAGC	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	36
PsyI	GACNNNGTC	1 cut(s)	381
RsaI	GTAC	2 cut(s)	359, 419
RsaNI	GTAC	2 cut(s)	358, 418
SalI	GTCGAC	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	156
Sau3AI	GATC	2 cut(s)	277, 303
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	1 cut(s)	145
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	316
SetI	ASST	4 cut(s)	180, 198, 345, 382
SmlI	CTYRAG	2 cut(s)	155, 317
SmoI	CTYRAG	2 cut(s)	155, 317
SsiI	CCGC	1 cut(s)	421
SspMI	CTAG	1 cut(s)	134
StyD4I	CCNGG	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	3 cut(s)	241, 355, 362
TaiI	ACGT	2 cut(s)	345, 382
TaqI	TCGA	1 cut(s)	42
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	2 cut(s)	196, 292
TspDTI	ATGAA	2 cut(s)	141, 325
TspRI	CASTG	2 cut(s)	196, 292
Tth111I	GACNNNGTC	1 cut(s)	381
Vha464I	CTTAAG	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	42
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.