Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004652

Physical Location & Seq

Genomic Coordinates Reverse (-)

15989495 .. 15991987

Gene Structure 2493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G164200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTCGTATCTACTGCCTCACCTCCACTCTGGATGGGCCGTGGATCAGGCCATCCTCGCTGAGGAGGAGCGTCTTGTCATCATTCGTTTCGGCCACGACTGGGATGAGACCTGTATGCAGATGGATGAAGTGCTAGCTGCAGTTGCTGAGACACTCAAAAACTTTGCTGTGATTTACCTTGTTGATATCACGGAGGTTCCTGATTTCAACACAATGTATGAGCTCTATGACCCATCGACTGTCATGTTCTTTTTCAGAAACAAACATATTATGATTGACCTTGGTACTGGGAACAACAACAAGATCAACTGGGCTCTCAAGGACAAGCAAGAGTTCATTGACATTGTTGAGACAGTGTACCGTGGGGCAAGGAAGGGACGCGGTCTCGTCATTGCTCCCAAGGATTACTCCACCAAGTACCGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DIM1

Protein Analysis

143

Amino Acids

16.56

Weight (kDa)

5.14

Isoelectric Point (pI)

23.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08290 AT5G08290
fragaria_vesca	FvH4_4g37070 FvH4_4g37070
malus_domestica	MD13G1003900.v1.1
prunus_persica	Prupe.1G348600_v2.0.a1 Prupe.1G348600_v2.0.a1 Prupe.1G348600_v2.0.a1 Prupe.1G348600_v2.0.a1 Prupe.1G348600_v2.0.a1 Prupe.6G164200_v2.0.a1
pyrus_communis	pycom13g00330
rosa_chinensis	RchiOBHm_Chr4g0446821 RchiOBHm_Chr5g0009351
rosa_laevigata	RLG00000005627 RLG00000031654
rosa_multiflora	Rmu_sc0001753.1_g000020 Rmu_sc0002711.1_g000022 Rmu_sc0009480.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066740 Rroxscaffold_1G00067440 Rroxscaffold_5G00387190
rosa_rugosa	Rorug04G0441900
rosa_samantha	Rh4AG436300 Rh4DG444100 Rh5AG072800 Rh5BG069100 Rh5CG081700 Rh5DG069400
rosa_wichuraiana	Rw4G037330 Rw5G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	381
AciI	CCGC	1 cut(s)	381
AclWI	GGATC	1 cut(s)	51
AcoI	YGGCCR	1 cut(s)	91
AfaI	GTAC	3 cut(s)	286, 359, 419
AfiI	CCNNNNNNNGG	2 cut(s)	61, 100
AgsI	TTSAA	1 cut(s)	208
AluBI	AGCT	2 cut(s)	137, 223
AluI	AGCT	2 cut(s)	137, 223
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	4 cut(s)	101, 143, 344, 389
AlwI	GGATC	1 cut(s)	51
AlwNI	CAGNNNCTG	1 cut(s)	146
AoxI	GGCC	3 cut(s)	36, 48, 91
ApeKI	GCWGC	1 cut(s)	137
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	11
AsuNHI	GCTAGC	1 cut(s)	133
BanII	GRGCYC	2 cut(s)	225, 316
Bbv12I	GWGCWC	1 cut(s)	225
BbvCI	CCTCAGC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	4 cut(s)	27, 59, 115, 241
BceAI	ACGGC	1 cut(s)	23
BcoDI	GTCTC	4 cut(s)	101, 143, 344, 389
BfaI	CTAG	1 cut(s)	134
BfmI	CTRYAG	1 cut(s)	138
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	198
BmrI	ACTGGG	3 cut(s)	109, 297, 319
BmtI	GCTAGC	1 cut(s)	137
BmuI	ACTGGG	3 cut(s)	109, 297, 319
Bpu10I	CCTNAGC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	302
BsaI	GGTCTC	2 cut(s)	101, 389
BsaJI	CCNNGG	4 cut(s)	39, 280, 361, 399
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 100
Bse1I	ACTGG	3 cut(s)	104, 292, 314
Bse3DI	GCAATG	1 cut(s)	390
BseDI	CCNNGG	4 cut(s)	39, 280, 361, 399
BseGI	GGATG	4 cut(s)	38, 51, 109, 130
BseLI	CCNNNNNNNGG	2 cut(s)	61, 100
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	2 cut(s)	51, 138
BseNI	ACTGG	3 cut(s)	104, 292, 314
BseRI	GAGGAG	2 cut(s)	77, 80
BseXI	GCAGC	1 cut(s)	124
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	3 cut(s)	38, 50, 93
BsiHKAI	GWGCWC	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	390
BslI	CCNNNNNNNGG	2 cut(s)	61, 100
BsmAI	GTCTC	4 cut(s)	101, 143, 344, 389
BsmFI	GGGAC	1 cut(s)	390
BsnI	GGCC	3 cut(s)	38, 50, 93
Bso31I	GGTCTC	2 cut(s)	101, 389
Bsp1286I	GDGCHC	2 cut(s)	225, 316
Bsp143I	GATC	2 cut(s)	43, 303
BspACI	CCGC	1 cut(s)	381
BspANI	GGCC	3 cut(s)	38, 50, 93
BspCNI	CTCAG	2 cut(s)	52, 139
BspFNI	CGCG	1 cut(s)	381
BspLI	GGNNCC	1 cut(s)	198
BspMAI	CTGCAG	1 cut(s)	142
BspOI	GCTAGC	1 cut(s)	137
BspPI	GGATC	1 cut(s)	51
BspTNI	GGTCTC	2 cut(s)	101, 389
BsrDI	GCAATG	1 cut(s)	390
BsrI	ACTGG	3 cut(s)	104, 292, 314
BssECI	CCNNGG	4 cut(s)	39, 280, 361, 399
BssMI	GATC	2 cut(s)	43, 303
BssT1I	CCWWGG	2 cut(s)	280, 399
Bst4CI	ACNGT	4 cut(s)	241, 355, 362, 422
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	60, 147
BstDSI	CCRYGG	2 cut(s)	39, 361
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstF5I	GGATG	4 cut(s)	38, 51, 109, 130
BstFNI	CGCG	1 cut(s)	381
BstKTI	GATC	2 cut(s)	46, 306
BstMAI	GTCTC	4 cut(s)	101, 143, 344, 389
BstMBI	GATC	2 cut(s)	43, 303
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 143
BstSFI	CTRYAG	1 cut(s)	138
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	1 cut(s)	124
BsuRI	GGCC	3 cut(s)	38, 50, 93
BtgI	CCRYGG	2 cut(s)	39, 361
BtsCI	GGATG	4 cut(s)	38, 51, 109, 130
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	1 cut(s)	135
CaiI	CAGNNNCTG	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	36
CseI	GACGC	2 cut(s)	59, 387
Csp6I	GTAC	3 cut(s)	285, 358, 418
CviAII	CATG	1 cut(s)	244
CviJI	RGCY	6 cut(s)	38, 50, 93, 137, 223, 314
CviKI_1	RGCY	6 cut(s)	38, 50, 93, 137, 223, 314
CviQI	GTAC	3 cut(s)	285, 358, 418
DdeI	CTNAG	2 cut(s)	60, 147
DpnI	GATC	2 cut(s)	45, 305
DpnII	GATC	2 cut(s)	43, 303
EaeI	YGGCCR	1 cut(s)	91
Ecl136II	GAGCTC	1 cut(s)	223
Eco130I	CCWWGG	2 cut(s)	280, 399
Eco24I	GRGCYC	2 cut(s)	225, 316
Eco31I	GGTCTC	2 cut(s)	101, 389
Eco32I	GATATC	1 cut(s)	187
Eco53kI	GAGCTC	1 cut(s)	223
EcoICRI	GAGCTC	1 cut(s)	223
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoRV	GATATC	1 cut(s)	187
EcoT14I	CCWWGG	2 cut(s)	280, 399
EcoT38I	GRGCYC	2 cut(s)	225, 316
ErhI	CCWWGG	2 cut(s)	280, 399
FaeI	CATG	1 cut(s)	247
FaiI	YATR	6 cut(s)	116, 219, 228, 245, 267, 272
FaqI	GGGAC	1 cut(s)	390
FatI	CATG	1 cut(s)	243
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	4 cut(s)	38, 45, 116, 137
FriOI	GRGCYC	2 cut(s)	225, 316
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	1 cut(s)	134
GluI	GCNGC	1 cut(s)	138
HaeIII	GGCC	3 cut(s)	38, 50, 93
HgaI	GACGC	2 cut(s)	59, 387
Hin1II	CATG	1 cut(s)	247
HphI	GGTGA	1 cut(s)	11
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	1 cut(s)	257
Hpy188III	TCNNGA	2 cut(s)	30, 200
Hpy8I	GTNNAC	1 cut(s)	358
HpyAV	CCTTC	1 cut(s)	367
HpyCH4III	ACNGT	4 cut(s)	241, 355, 362, 422
HpyCH4V	TGCA	2 cut(s)	118, 140
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 143
HpyF3I	CTNAG	2 cut(s)	60, 147
Hsp92II	CATG	1 cut(s)	247
Kzo9I	GATC	2 cut(s)	43, 303
LmnI	GCTCC	2 cut(s)	67, 400
LpnPI	CCDG	7 cut(s)	15, 32, 85, 124, 213, 273, 295
Lsp1109I	GCAGC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	134
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	2 cut(s)	45, 305
MboI	GATC	2 cut(s)	43, 303
MhlI	GDGCHC	2 cut(s)	225, 316
MnlI	CCTC	6 cut(s)	27, 32, 55, 58, 65, 187
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	2 cut(s)	56, 143
NdeII	GATC	2 cut(s)	43, 303
NheI	GCTAGC	1 cut(s)	133
NlaIII	CATG	1 cut(s)	247
NlaIV	GGNNCC	1 cut(s)	198
PflFI	GACNNNGTC	1 cut(s)	381
PkrI	GCNGC	1 cut(s)	139
Psp124BI	GAGCTC	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	36
PstI	CTGCAG	1 cut(s)	142
PstNI	CAGNNNCTG	1 cut(s)	146
PsyI	GACNNNGTC	1 cut(s)	381
RsaI	GTAC	3 cut(s)	286, 359, 419
RsaNI	GTAC	3 cut(s)	285, 358, 418
SacI	GAGCTC	1 cut(s)	225
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	2 cut(s)	43, 303
Sau96I	GGNCC	1 cut(s)	36
SduI	GDGCHC	2 cut(s)	225, 316
SetI	ASST	7 cut(s)	24, 113, 139, 180, 198, 225, 282
SfcI	CTRYAG	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
SsiI	CCGC	1 cut(s)	381
SspMI	CTAG	1 cut(s)	134
SstI	GAGCTC	1 cut(s)	225
StyI	CCWWGG	2 cut(s)	280, 399
TaaI	ACNGT	4 cut(s)	241, 355, 362, 422
TaqI	TCGA	1 cut(s)	236
TscAI	CASTG	1 cut(s)	360
TseI	GCWGC	1 cut(s)	137
TspDTI	ATGAA	2 cut(s)	141, 325
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	1 cut(s)	360
Tth111I	GACNNNGTC	1 cut(s)	381
XagI	CCTNNNNNAGG	1 cut(s)	59
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.