Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004652

Physical Location & Seq

Genomic Coordinates Forward (+)

32542666 .. 32544515

Gene Structure 1850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G348600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTCGTATTTGCTGCCCCACCTCCACTCTGGATGGGCCGTCGATCAGGCCATCCTCGCCGAGGAGGAGCGTCTCGTCCTCATCCGCTTCGGCCACGACTGGGACGAGACCTGTATGCAGGGTTTATTTCATTCATATACCTTGAAGACCTGGTATAAATCTTTCACCTTTGATCTATGCTTGCAGATTGAGATGGATGAAGTGCTTGCTTCAGTTGCTGAGACACTCAAAAACTTTGCTGTGATTTACCTTGTCGATATCACGGAGGTTCCTGATTTCAACACAATGTATGAGCTCTATGACCCATCCACTGTCATGTTCTTTTTCAGAAACAAGCACATTATGATTGACCTTGGCACTGGGAACAACAACAAGATCAACTGGGCTCTCAAGGACAAGCAAGAGTTCATTGACATCGTTGAGACGGTGTACCGTGGGGCAAGGAAGGGACGCGGTCTGGTCATTGCTCCCAAAGATTACTCCACCAAGTACCGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DIM1

Protein Analysis

167

Amino Acids

19.5

Weight (kDa)

5.32

Isoelectric Point (pI)

26.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08290 AT5G08290
fragaria_vesca	FvH4_4g37070 FvH4_4g37070
malus_domestica	MD13G1003900.v1.1
prunus_persica	Prupe.1G348600_v2.0.a1 Prupe.1G348600_v2.0.a1 Prupe.1G348600_v2.0.a1 Prupe.1G348600_v2.0.a1 Prupe.1G348600_v2.0.a1 Prupe.6G164200_v2.0.a1
pyrus_communis	pycom13g00330
rosa_chinensis	RchiOBHm_Chr4g0446821 RchiOBHm_Chr5g0009351
rosa_laevigata	RLG00000005627 RLG00000031654
rosa_multiflora	Rmu_sc0001753.1_g000020 Rmu_sc0002711.1_g000022 Rmu_sc0009480.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066740 Rroxscaffold_1G00067440 Rroxscaffold_5G00387190
rosa_rugosa	Rorug04G0441900
rosa_samantha	Rh4AG436300 Rh4DG444100 Rh5AG072800 Rh5BG069100 Rh5CG081700 Rh5DG069400
rosa_wichuraiana	Rw4G037330 Rw5G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	453
AciI	CCGC	2 cut(s)	85, 453
AcoI	YGGCCR	1 cut(s)	91
AcuI	CTGAAG	1 cut(s)	195
AfaI	GTAC	2 cut(s)	431, 491
AfiI	CCNNNNNNNGG	2 cut(s)	61, 100
AgsI	TTSAA	2 cut(s)	145, 280
AjnI	CCWGG	1 cut(s)	149
AluBI	AGCT	1 cut(s)	295
AluI	AGCT	1 cut(s)	295
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	4 cut(s)	77, 101, 215, 416
AlwNI	CAGNNNCTG	1 cut(s)	218
AoxI	GGCC	3 cut(s)	36, 48, 91
ApeKI	GCWGC	1 cut(s)	13
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	157
BanII	GRGCYC	2 cut(s)	297, 388
BbsI	GAAGAC	1 cut(s)	152
Bbv12I	GWGCWC	1 cut(s)	297
BccI	CCATC	4 cut(s)	27, 59, 187, 313
BceAI	ACGGC	1 cut(s)	23
BciT130I	CCWGG	1 cut(s)	151
BcoDI	GTCTC	4 cut(s)	77, 101, 215, 416
BisI	GCNGC	1 cut(s)	14
BlsI	GCNGC	1 cut(s)	15
Bme1390I	CCNGG	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	270
BmrFI	CCNGG	1 cut(s)	151
BmrI	ACTGGG	3 cut(s)	109, 369, 391
BmuI	ACTGGG	3 cut(s)	109, 369, 391
BpiI	GAAGAC	1 cut(s)	152
BpuEI	CTTGAG	1 cut(s)	374
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	3 cut(s)	60, 352, 433
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 100
Bse1I	ACTGG	3 cut(s)	104, 364, 386
Bse3DI	GCAATG	1 cut(s)	462
BseBI	CCWGG	1 cut(s)	151
BseDI	CCNNGG	3 cut(s)	60, 352, 433
BseGI	GGATG	5 cut(s)	38, 51, 81, 202, 305
BseLI	CCNNNNNNNGG	2 cut(s)	61, 100
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	3 cut(s)	104, 364, 386
BseRI	GAGGAG	2 cut(s)	77, 80
Bsh1236I	CGCG	1 cut(s)	453
BshFI	GGCC	3 cut(s)	38, 50, 93
BsiHKAI	GWGCWC	1 cut(s)	297
BslFI	GGGAC	2 cut(s)	116, 462
BslI	CCNNNNNNNGG	2 cut(s)	61, 100
BsmAI	GTCTC	4 cut(s)	77, 101, 215, 416
BsmBI	CGTCTC	2 cut(s)	77, 416
BsmFI	GGGAC	2 cut(s)	116, 462
BsnI	GGCC	3 cut(s)	38, 50, 93
Bso31I	GGTCTC	1 cut(s)	101
Bsp1286I	GDGCHC	2 cut(s)	297, 388
Bsp143I	GATC	3 cut(s)	43, 172, 375
BspACI	CCGC	2 cut(s)	85, 453
BspANI	GGCC	3 cut(s)	38, 50, 93
BspCNI	CTCAG	1 cut(s)	211
BspFNI	CGCG	1 cut(s)	453
BspLI	GGNNCC	1 cut(s)	270
BspTNI	GGTCTC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	462
BsrI	ACTGG	3 cut(s)	104, 364, 386
BssECI	CCNNGG	3 cut(s)	60, 352, 433
BssMI	GATC	3 cut(s)	43, 172, 375
BssT1I	CCWWGG	1 cut(s)	352
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	4 cut(s)	313, 427, 434, 494
BstC8I	GCNNGC	2 cut(s)	182, 207
BstDEI	CTNAG	1 cut(s)	219
BstDSI	CCRYGG	1 cut(s)	433
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstF5I	GGATG	5 cut(s)	38, 51, 81, 202, 305
BstFNI	CGCG	1 cut(s)	453
BstKTI	GATC	3 cut(s)	46, 175, 378
BstMAI	GTCTC	4 cut(s)	77, 101, 215, 416
BstMBI	GATC	3 cut(s)	43, 172, 375
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 215
BstNI	CCWGG	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	149
BstUI	CGCG	1 cut(s)	453
BstV2I	GAAGAC	1 cut(s)	152
BsuRI	GGCC	3 cut(s)	38, 50, 93
BtgI	CCRYGG	1 cut(s)	433
BtsCI	GGATG	5 cut(s)	38, 51, 81, 202, 305
BtsIMutI	CAGTG	2 cut(s)	309, 357
Cac8I	GCNNGC	2 cut(s)	182, 207
CaiI	CAGNNNCTG	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	36
CseI	GACGC	2 cut(s)	59, 459
CsiI	ACCWGGT	1 cut(s)	149
Csp6I	GTAC	2 cut(s)	430, 490
CviAII	CATG	1 cut(s)	316
CviJI	RGCY	5 cut(s)	38, 50, 93, 295, 386
CviKI_1	RGCY	5 cut(s)	38, 50, 93, 295, 386
CviQI	GTAC	2 cut(s)	430, 490
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	3 cut(s)	45, 174, 377
DpnII	GATC	3 cut(s)	43, 172, 375
EaeI	YGGCCR	1 cut(s)	91
Ecl136II	GAGCTC	1 cut(s)	295
Eco130I	CCWWGG	1 cut(s)	352
Eco24I	GRGCYC	2 cut(s)	297, 388
Eco31I	GGTCTC	1 cut(s)	101
Eco32I	GATATC	1 cut(s)	259
Eco53kI	GAGCTC	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	195
EcoICRI	GAGCTC	1 cut(s)	295
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	149
EcoRV	GATATC	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	352
EcoT38I	GRGCYC	2 cut(s)	297, 388
ErhI	CCWWGG	1 cut(s)	352
Esp3I	CGTCTC	2 cut(s)	77, 416
FaeI	CATG	1 cut(s)	319
FaiI	YATR	9 cut(s)	116, 136, 138, 156, 178, 291, 300, 317, 344
FaqI	GGGAC	2 cut(s)	116, 462
FatI	CATG	1 cut(s)	315
Fnu4HI	GCNGC	1 cut(s)	14
FokI	GGATG	5 cut(s)	38, 45, 68, 209, 292
FriOI	GRGCYC	2 cut(s)	297, 388
Fsp4HI	GCNGC	1 cut(s)	14
GluI	GCNGC	1 cut(s)	14
HaeIII	GGCC	3 cut(s)	38, 50, 93
HgaI	GACGC	2 cut(s)	59, 459
Hin1II	CATG	1 cut(s)	319
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	1 cut(s)	430
Hpy188I	TCNGA	1 cut(s)	329
Hpy188III	TCNNGA	2 cut(s)	30, 272
Hpy8I	GTNNAC	1 cut(s)	430
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	439
HpyCH4III	ACNGT	4 cut(s)	313, 427, 434, 494
HpyCH4V	TGCA	2 cut(s)	118, 184
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 215
HpyF3I	CTNAG	1 cut(s)	219
Hsp92II	CATG	1 cut(s)	319
Kzo9I	GATC	3 cut(s)	43, 172, 375
LmnI	GCTCC	2 cut(s)	67, 472
MabI	ACCWGGT	1 cut(s)	149
MaeIII	GTNAC	1 cut(s)	494
MalI	GATC	3 cut(s)	45, 174, 377
MboI	GATC	3 cut(s)	43, 172, 375
MboII	GAAGA	1 cut(s)	157
MhlI	GDGCHC	2 cut(s)	297, 388
MnlI	CCTC	6 cut(s)	32, 55, 58, 65, 89, 259
MslI	CAYNNNNRTG	1 cut(s)	314
MspR9I	CCNGG	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	151
MvnI	CGCG	1 cut(s)	453
MwoI	GCNNNNNNNGC	2 cut(s)	56, 215
NdeII	GATC	3 cut(s)	43, 172, 375
NlaIII	CATG	1 cut(s)	319
NlaIV	GGNNCC	1 cut(s)	270
NmeAIII	GCCGAG	1 cut(s)	85
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PflFI	GACNNNGTC	1 cut(s)	453
PkrI	GCNGC	1 cut(s)	15
Psp124BI	GAGCTC	1 cut(s)	297
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	270
PspPI	GGNCC	1 cut(s)	36
PstNI	CAGNNNCTG	1 cut(s)	218
PsyI	GACNNNGTC	1 cut(s)	453
RsaI	GTAC	2 cut(s)	431, 491
RsaNI	GTAC	2 cut(s)	430, 490
RseI	CAYNNNNRTG	1 cut(s)	314
SacI	GAGCTC	1 cut(s)	297
SatI	GCNGC	1 cut(s)	14
Sau3AI	GATC	3 cut(s)	43, 172, 375
Sau96I	GGNCC	1 cut(s)	36
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	2 cut(s)	297, 388
SetI	ASST	9 cut(s)	24, 113, 143, 152, 170, 252, 270, 297, 354
SexAI	ACCWGGT	1 cut(s)	149
SmiMI	CAYNNNNRTG	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
SsiI	CCGC	2 cut(s)	85, 453
SstI	GAGCTC	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	352
TaaI	ACNGT	4 cut(s)	313, 427, 434, 494
TaqI	TCGA	2 cut(s)	42, 255
TscAI	CASTG	2 cut(s)	316, 364
TseI	GCWGC	1 cut(s)	13
TspDTI	ATGAA	4 cut(s)	119, 123, 213, 397
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	2 cut(s)	316, 364
Tth111I	GACNNNGTC	1 cut(s)	453
XagI	CCTNNNNNAGG	1 cut(s)	59
XcmI	CCANNNNNNNNNTGG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.