Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0004652

Physical Location & Seq

Genomic Coordinates Reverse (-)

243389 .. 244878

Gene Structure 1490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1003900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTCGTATCTGCTGCCGCACCTCCACTCAGGATGGGCCGTCGATCAGGCCATCCTCGCCGAGGAGGAGCGTCTCGTTCTCATCCGATTCGGCCACGATTGGGATGAGACCTGTATGCAGATGGATGAGGTGCTGGCTTCAGTTGCTGAGACATTAAAAAACTTTGCTGTGATTTACCTTGTGGACATCACGGAGGTTCCTGATTTCAACACAATGTATGAGCTGTACGATCCATCGACAGTGATGTTCTTTTTCAGAAACAAGCACATTATGATTGATCTTGGCACGGGGAACAACAACAAGATCAACTGGGCTCTCAAGGACAAGCAAGAGTTCATTGACATTGTTGAGACAGTGTACCGCGGGGCAAGGAAGGGACGCGGTCTGGTCATTGCTCCCAAGGACTACTCCACCAAGTATCGCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DIM1

Protein Analysis

143

Amino Acids

16.57

Weight (kDa)

5.14

Isoelectric Point (pI)

23.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIM1	PF02966	4 - 136	4e-68	Mitosis protein DIM1
Thioredoxin	PF00085	17 - 101	5.2e-06	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08290 AT5G08290
fragaria_vesca	FvH4_4g37070 FvH4_4g37070
malus_domestica	MD13G1003900.v1.1
prunus_persica	Prupe.1G348600_v2.0.a1 Prupe.1G348600_v2.0.a1 Prupe.1G348600_v2.0.a1 Prupe.1G348600_v2.0.a1 Prupe.1G348600_v2.0.a1 Prupe.6G164200_v2.0.a1
pyrus_communis	pycom13g00330
rosa_chinensis	RchiOBHm_Chr4g0446821 RchiOBHm_Chr5g0009351
rosa_laevigata	RLG00000005627 RLG00000031654
rosa_multiflora	Rmu_sc0001753.1_g000020 Rmu_sc0002711.1_g000022 Rmu_sc0009480.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066740 Rroxscaffold_1G00067440 Rroxscaffold_5G00387190
rosa_rugosa	Rorug04G0441900
rosa_samantha	Rh4AG436300 Rh4DG444100 Rh5AG072800 Rh5BG069100 Rh5CG081700 Rh5DG069400
rosa_wichuraiana	Rw4G037330 Rw5G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	363, 381
AciI	CCGC	4 cut(s)	17, 361, 363, 381
AclWI	GGATC	1 cut(s)	224
AcoI	YGGCCR	1 cut(s)	91
AcuI	CTGAAG	1 cut(s)	123
AfaI	GTAC	2 cut(s)	227, 359
AfiI	CCNNNNNNNGG	2 cut(s)	61, 100
AgsI	TTSAA	1 cut(s)	208
AluBI	AGCT	1 cut(s)	223
AluI	AGCT	1 cut(s)	223
Alw26I	GTCTC	4 cut(s)	77, 101, 143, 344
AlwI	GGATC	1 cut(s)	224
AlwNI	CAGNNNCTG	1 cut(s)	146
AoxI	GGCC	3 cut(s)	36, 48, 91
ApeKI	GCWGC	1 cut(s)	13
AspS9I	GGNCC	1 cut(s)	36
BanII	GRGCYC	1 cut(s)	316
BccI	CCATC	4 cut(s)	27, 59, 115, 241
BceAI	ACGGC	1 cut(s)	23
BcoDI	GTCTC	4 cut(s)	77, 101, 143, 344
BisI	GCNGC	2 cut(s)	14, 17
BlsI	GCNGC	2 cut(s)	15, 18
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	198
BmrI	ACTGGG	1 cut(s)	319
BmuI	ACTGGG	1 cut(s)	319
BpuEI	CTTGAG	1 cut(s)	302
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	3 cut(s)	60, 361, 399
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 100
Bse1I	ACTGG	1 cut(s)	314
Bse3DI	GCAATG	1 cut(s)	390
BseDI	CCNNGG	3 cut(s)	60, 361, 399
BseGI	GGATG	5 cut(s)	38, 51, 81, 109, 130
BseLI	CCNNNNNNNGG	2 cut(s)	61, 100
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	2 cut(s)	42, 138
BseNI	ACTGG	1 cut(s)	314
BseRI	GAGGAG	2 cut(s)	77, 80
Bsh1236I	CGCG	2 cut(s)	363, 381
BshFI	GGCC	3 cut(s)	38, 50, 93
BslFI	GGGAC	1 cut(s)	390
BslI	CCNNNNNNNGG	2 cut(s)	61, 100
BsmAI	GTCTC	4 cut(s)	77, 101, 143, 344
BsmBI	CGTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	390
BsnI	GGCC	3 cut(s)	38, 50, 93
Bso31I	GGTCTC	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	4 cut(s)	43, 229, 277, 303
BspACI	CCGC	4 cut(s)	17, 361, 363, 381
BspANI	GGCC	3 cut(s)	38, 50, 93
BspCNI	CTCAG	2 cut(s)	41, 139
BspFNI	CGCG	2 cut(s)	363, 381
BspLI	GGNNCC	1 cut(s)	198
BspPI	GGATC	1 cut(s)	224
BspTNI	GGTCTC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	390
BsrI	ACTGG	1 cut(s)	314
BssECI	CCNNGG	3 cut(s)	60, 361, 399
BssMI	GATC	4 cut(s)	43, 229, 277, 303
BssT1I	CCWWGG	1 cut(s)	399
Bst4CI	ACNGT	2 cut(s)	241, 355
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	28, 147
BstDSI	CCRYGG	1 cut(s)	361
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstF5I	GGATG	5 cut(s)	38, 51, 81, 109, 130
BstFNI	CGCG	2 cut(s)	363, 381
BstKTI	GATC	4 cut(s)	46, 232, 280, 306
BstMAI	GTCTC	4 cut(s)	77, 101, 143, 344
BstMBI	GATC	4 cut(s)	43, 229, 277, 303
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 143
BstUI	CGCG	2 cut(s)	363, 381
BsuRI	GGCC	3 cut(s)	38, 50, 93
BtgI	CCRYGG	1 cut(s)	361
BtsCI	GGATG	5 cut(s)	38, 51, 81, 109, 130
BtsIMutI	CAGTG	2 cut(s)	246, 360
Cac8I	GCNNGC	1 cut(s)	135
CaiI	CAGNNNCTG	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	36
Cfr42I	CCGCGG	1 cut(s)	364
CseI	GACGC	2 cut(s)	59, 387
Csp6I	GTAC	2 cut(s)	226, 358
CviJI	RGCY	6 cut(s)	38, 50, 93, 137, 223, 314
CviKI_1	RGCY	6 cut(s)	38, 50, 93, 137, 223, 314
CviQI	GTAC	2 cut(s)	226, 358
DdeI	CTNAG	2 cut(s)	28, 147
DpnI	GATC	4 cut(s)	45, 231, 279, 305
DpnII	GATC	4 cut(s)	43, 229, 277, 303
EaeI	YGGCCR	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	316
Eco31I	GGTCTC	1 cut(s)	101
Eco57I	CTGAAG	1 cut(s)	123
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoT14I	CCWWGG	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	399
Esp3I	CGTCTC	1 cut(s)	77
FaiI	YATR	3 cut(s)	116, 219, 272
FaqI	GGGAC	1 cut(s)	390
FauI	CCCGC	1 cut(s)	356
Fnu4HI	GCNGC	2 cut(s)	14, 17
FokI	GGATG	5 cut(s)	38, 45, 68, 116, 137
FriOI	GRGCYC	1 cut(s)	316
Fsp4HI	GCNGC	2 cut(s)	14, 17
GluI	GCNGC	2 cut(s)	14, 17
HaeIII	GGCC	3 cut(s)	38, 50, 93
HgaI	GACGC	2 cut(s)	59, 387
HinfI	GANTC	1 cut(s)	87
Hpy166II	GTNNAC	2 cut(s)	184, 358
Hpy188I	TCNGA	2 cut(s)	86, 257
Hpy188III	TCNNGA	2 cut(s)	30, 200
Hpy8I	GTNNAC	2 cut(s)	184, 358
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	367
HpyCH4III	ACNGT	2 cut(s)	241, 355
HpyCH4V	TGCA	1 cut(s)	118
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 143
HpyF3I	CTNAG	2 cut(s)	28, 147
KspI	CCGCGG	1 cut(s)	364
Kzo9I	GATC	4 cut(s)	43, 229, 277, 303
LmnI	GCTCC	2 cut(s)	67, 400
LpnPI	CCDG	7 cut(s)	15, 32, 119, 124, 213, 295, 371
MalI	GATC	4 cut(s)	45, 231, 279, 305
MboI	GATC	4 cut(s)	43, 229, 277, 303
MhlI	GDGCHC	1 cut(s)	316
MnlI	CCTC	6 cut(s)	32, 55, 58, 65, 121, 187
MseI	TTAA	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	363
MvnI	CGCG	2 cut(s)	363, 381
MwoI	GCNNNNNNNGC	2 cut(s)	56, 143
NdeII	GATC	4 cut(s)	43, 229, 277, 303
NlaIV	GGNNCC	1 cut(s)	198
NmeAIII	GCCGAG	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	87
PflFI	GACNNNGTC	1 cut(s)	381
PkrI	GCNGC	2 cut(s)	15, 18
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	36
PstNI	CAGNNNCTG	1 cut(s)	146
PsyI	GACNNNGTC	1 cut(s)	381
RsaI	GTAC	2 cut(s)	227, 359
RsaNI	GTAC	2 cut(s)	226, 358
SacII	CCGCGG	1 cut(s)	364
SaqAI	TTAA	1 cut(s)	155
SatI	GCNGC	2 cut(s)	14, 17
Sau3AI	GATC	4 cut(s)	43, 229, 277, 303
Sau96I	GGNCC	1 cut(s)	36
SduI	GDGCHC	1 cut(s)	316
SetI	ASST	6 cut(s)	24, 113, 132, 180, 198, 225
Sfr303I	CCGCGG	1 cut(s)	364
SgrBI	CCGCGG	1 cut(s)	364
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
SsiI	CCGC	4 cut(s)	17, 361, 363, 381
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	2 cut(s)	241, 355
TaqI	TCGA	2 cut(s)	42, 236
TauI	GCSGC	1 cut(s)	19
TfiI	GAWTC	1 cut(s)	87
Tru1I	TTAA	1 cut(s)	155
Tru9I	TTAA	1 cut(s)	155
TscAI	CASTG	2 cut(s)	246, 360
TseI	GCWGC	1 cut(s)	13
TspDTI	ATGAA	1 cut(s)	325
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	2 cut(s)	246, 360
Tth111I	GACNNNGTC	1 cut(s)	381
XagI	CCTNNNNNAGG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.