FvH4_4g37070

Thioredoxin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0004652
Physical Location & Seq
Forward (+)
33705957 .. 33709318
3362 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g37070.t2

Sequence Viewer

Length: 429 bp
ATGTCGTATTTGCTGCCGCACCTGCACTCGGGATGGGCCGTCGACCAGGCCATTTTGGCCGAGGAAGAACGTGTTGTCATCATACGGTTCGGCCATGATTGGGACGACACTTGCATGCAGATGGATGAAGTGCTAGCAGCAGTGGCTGACAAAATTAAAAACTTTGCTGTTATTTACCTTGTGGACATTTCGGAGGTGCCTGATTTCAACACAATGTATGAGCTGTATGATCCATCCACAGTCATGTTCTTTTTCAGAAACAAGCACATTATGATTGACCTTGGCACTGGGAACAACAACAAGATCAATTGGGCTCTCAAGGACAAGCAAGAGTTCATTGACATTGTGGAGACTGTGTACCGTGGTGCAAGGAAGGGTCGTGGTTTGGTGATTGCTCCTAAGGATTACTCCACCAAATACCGCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
DIM1

Protein Analysis

143

Amino Acids

16.53

Weight (kDa)

5.3

Isoelectric Point (pI)

20.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIM1 PF02966 91 - 188 7.9e-48 Mitosis protein DIM1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 30
Acc36I ACCTGC 1 cut(s) 30
AccB1I GGYRCC 1 cut(s) 196
AccI GTMKAC 1 cut(s) 42
AciI CCGC 2 cut(s) 17, 421
AclWI GGATC 1 cut(s) 224
AcoI YGGCCR 2 cut(s) 57, 91
AfaI GTAC 1 cut(s) 359
AfiI CCNNNNNNNGG 2 cut(s) 28, 100
AflIII ACRYGT 1 cut(s) 70
AgsI TTSAA 1 cut(s) 208
AjnI CCWGG 1 cut(s) 45
AluBI AGCT 1 cut(s) 223
AluI AGCT 1 cut(s) 223
Alw26I GTCTC 1 cut(s) 344
AlwI GGATC 1 cut(s) 224
AlwNI CAGNNNCTG 1 cut(s) 146
Ama87I CYCGRG 1 cut(s) 28
AoxI GGCC 4 cut(s) 36, 48, 57, 91
ApeKI GCWGC 2 cut(s) 13, 137
AspS9I GGNCC 1 cut(s) 36
AsuHPI GGTGA 1 cut(s) 400
AsuNHI GCTAGC 1 cut(s) 133
AvaI CYCGRG 1 cut(s) 28
AxyI CCTNAGG 1 cut(s) 399
BanI GGYRCC 1 cut(s) 196
BanII GRGCYC 1 cut(s) 316
BbvI GCAGC 1 cut(s) 149
BccI CCATC 3 cut(s) 27, 115, 241
BceAI ACGGC 1 cut(s) 23
BciT130I CCWGG 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 344
BfaI CTAG 1 cut(s) 134
BfuAI ACCTGC 1 cut(s) 30
BglI GCCNNNNNGGC 1 cut(s) 56
BisI GCNGC 3 cut(s) 14, 17, 138
BlsI GCNGC 3 cut(s) 15, 18, 139
Bme1390I CCNGG 1 cut(s) 47
BmeT110I CYCGRG 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 198
BmrFI CCNGG 1 cut(s) 47
BmrI ACTGGG 1 cut(s) 297
BmtI GCTAGC 1 cut(s) 137
BmuI ACTGGG 1 cut(s) 297
BpuEI CTTGAG 1 cut(s) 302
BsaJI CCNNGG 3 cut(s) 60, 280, 361
BsaXI ACNNNNNCTCC 2 cut(s) 341, 371
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 100
Bse1I ACTGG 1 cut(s) 292
Bse21I CCTNAGG 1 cut(s) 399
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 3 cut(s) 60, 280, 361
BseGI GGATG 3 cut(s) 38, 130, 233
BseLI CCNNNNNNNGG 2 cut(s) 28, 100
BseNI ACTGG 1 cut(s) 292
BseXI GCAGC 1 cut(s) 149
BsgI GTGCAG 1 cut(s) 8
BshFI GGCC 4 cut(s) 38, 50, 59, 93
BshNI GGYRCC 1 cut(s) 196
BsiHKCI CYCGRG 1 cut(s) 28
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 2 cut(s) 28, 100
BsmAI GTCTC 1 cut(s) 344
BsmFI GGGAC 1 cut(s) 116
BsnI GGCC 4 cut(s) 38, 50, 59, 93
BsoBI CYCGRG 1 cut(s) 28
Bsp1286I GDGCHC 1 cut(s) 316
Bsp143I GATC 2 cut(s) 229, 303
BspACI CCGC 2 cut(s) 17, 421
BspANI GGCC 4 cut(s) 38, 50, 59, 93
BspLI GGNNCC 1 cut(s) 198
BspMI ACCTGC 1 cut(s) 30
BspOI GCTAGC 1 cut(s) 137
BspPI GGATC 1 cut(s) 224
BspT107I GGYRCC 1 cut(s) 196
BsrI ACTGG 1 cut(s) 292
BssECI CCNNGG 3 cut(s) 60, 280, 361
BssMI GATC 2 cut(s) 229, 303
BssT1I CCWWGG 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 4 cut(s) 87, 241, 355, 362
BstC8I GCNNGC 2 cut(s) 116, 135
BstDEI CTNAG 1 cut(s) 399
BstDSI CCRYGG 1 cut(s) 361
BstF5I GGATG 3 cut(s) 38, 130, 233
BstKTI GATC 2 cut(s) 232, 306
BstMAI GTCTC 1 cut(s) 344
BstMBI GATC 2 cut(s) 229, 303
BstMWI GCNNNNNNNGC 3 cut(s) 22, 56, 143
BstNI CCWGG 1 cut(s) 47
BstNSI RCATGY 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 149
Bsu36I CCTNAGG 1 cut(s) 399
BsuRI GGCC 4 cut(s) 38, 50, 59, 93
BtgI CCRYGG 1 cut(s) 361
BtsCI GGATG 3 cut(s) 38, 130, 233
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 2 cut(s) 147, 285
BveI ACCTGC 1 cut(s) 30
Cac8I GCNNGC 2 cut(s) 116, 135
CaiI CAGNNNCTG 1 cut(s) 146
Cfr13I GGNCC 1 cut(s) 36
Csp6I GTAC 1 cut(s) 358
CviAII CATG 3 cut(s) 95, 115, 244
CviJI RGCY 7 cut(s) 38, 50, 59, 93, 146, 223, 314
CviKI_1 RGCY 7 cut(s) 38, 50, 59, 93, 146, 223, 314
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 1 cut(s) 399
DpnI GATC 2 cut(s) 231, 305
DpnII GATC 2 cut(s) 229, 303
EaeI YGGCCR 2 cut(s) 57, 91
Eco130I CCWWGG 1 cut(s) 280
Eco24I GRGCYC 1 cut(s) 316
Eco81I CCTNAGG 1 cut(s) 399
Eco88I CYCGRG 1 cut(s) 28
EcoRII CCWGG 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 280
EcoT38I GRGCYC 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 280
FaeI CATG 3 cut(s) 98, 118, 247
FaiI YATR 7 cut(s) 83, 96, 116, 219, 228, 245, 272
FaqI GGGAC 1 cut(s) 116
FatI CATG 3 cut(s) 94, 114, 243
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 3 cut(s) 14, 17, 138
FokI GGATG 3 cut(s) 45, 137, 220
FriOI GRGCYC 1 cut(s) 316
Fsp4HI GCNGC 3 cut(s) 14, 17, 138
FspBI CTAG 1 cut(s) 134
GluI GCNGC 3 cut(s) 14, 17, 138
HaeIII GGCC 4 cut(s) 38, 50, 59, 93
Hin1II CATG 3 cut(s) 98, 118, 247
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HphI GGTGA 1 cut(s) 400
Hpy166II GTNNAC 3 cut(s) 43, 184, 358
Hpy188I TCNGA 2 cut(s) 193, 257
Hpy188III TCNNGA 1 cut(s) 30
Hpy8I GTNNAC 3 cut(s) 43, 184, 358
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 367
HpyCH4III ACNGT 4 cut(s) 87, 241, 355, 362
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 4 cut(s) 25, 114, 118, 368
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 56, 143
HpyF3I CTNAG 1 cut(s) 399
HpySE526I ACGT 1 cut(s) 70
Hsp92II CATG 3 cut(s) 98, 118, 247
Kzo9I GATC 2 cut(s) 229, 303
LmnI GCTCC 1 cut(s) 400
LpnPI CCDG 5 cut(s) 32, 35, 59, 213, 273
Lsp1109I GCAGC 1 cut(s) 149
MaeI CTAG 1 cut(s) 134
MaeII ACGT 1 cut(s) 70
MalI GATC 2 cut(s) 231, 305
MboI GATC 2 cut(s) 229, 303
MboII GAAGA 1 cut(s) 77
MfeI CAATTG 1 cut(s) 307
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 2 cut(s) 153, 307
MnlI CCTC 2 cut(s) 55, 187
MseI TTAA 1 cut(s) 156
MslI CAYNNNNRTG 3 cut(s) 113, 119, 242
MspR9I CCNGG 1 cut(s) 47
MunI CAATTG 1 cut(s) 307
MvaI CCWGG 1 cut(s) 47
MwoI GCNNNNNNNGC 3 cut(s) 22, 56, 143
NdeII GATC 2 cut(s) 229, 303
NheI GCTAGC 1 cut(s) 133
NlaIII CATG 3 cut(s) 98, 118, 247
NlaIV GGNNCC 1 cut(s) 198
NmeAIII GCCGAG 1 cut(s) 85
NspI RCATGY 1 cut(s) 118
PaeI GCATGC 1 cut(s) 118
PaqCI CACCTGC 1 cut(s) 30
PkrI GCNGC 3 cut(s) 15, 18, 139
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 198
PspPI GGNCC 1 cut(s) 36
PstNI CAGNNNCTG 1 cut(s) 146
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
RseI CAYNNNNRTG 3 cut(s) 113, 119, 242
SalI GTCGAC 1 cut(s) 41
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 3 cut(s) 14, 17, 138
Sau3AI GATC 2 cut(s) 229, 303
Sau96I GGNCC 1 cut(s) 36
ScrFI CCNGG 1 cut(s) 47
SduI GDGCHC 1 cut(s) 316
SetI ASST 6 cut(s) 24, 73, 180, 198, 225, 282
SfiI GGCCNNNNNGGCC 1 cut(s) 56
SmiMI CAYNNNNRTG 3 cut(s) 113, 119, 242
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
SphI GCATGC 1 cut(s) 118
Sse9I AATT 2 cut(s) 153, 307
SsiI CCGC 2 cut(s) 17, 421
SspMI CTAG 1 cut(s) 134
StyD4I CCNGG 1 cut(s) 45
StyI CCWWGG 1 cut(s) 280
TaaI ACNGT 4 cut(s) 87, 241, 355, 362
TaiI ACGT 1 cut(s) 73
TaqI TCGA 1 cut(s) 42
TasI AATT 2 cut(s) 153, 307
TauI GCSGC 1 cut(s) 19
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 2 cut(s) 147, 292
TseI GCWGC 2 cut(s) 13, 137
TspDTI ATGAA 2 cut(s) 141, 325
TspRI CASTG 2 cut(s) 147, 292
XceI RCATGY 1 cut(s) 118
XmiI GTMKAC 1 cut(s) 42
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.