Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001753.1

Orthogroup ID

OG0004652

Physical Location & Seq

Genomic Coordinates Reverse (-)

92417 .. 93814

Gene Structure 1398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001753.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atgtcgtatttgctgccgcacctgcactcaggatgggccgtcgaccaggcgattctggccgaggaagaacgtgttgtcatcatacgattcggccatgattgggacgagacttgcatgcagatggatgaggtactagcatcagttgctgacaaaattaaaaactttgctgtcatttaccttgtggacatttcagaggttcctgatttcaatacactgtatgagctgtatgacccatccacagttatgttctttttcagaaacaagcacattatgattgaccttggcactgggaacaacaacaagattaactgggctctcaaggacaagcaagagttcattgacattgtggagacagtgtaccgtggtgcaaggaaggggcgtggtctggtgattgctcccaaggattactccaccaagtaccgctactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DIM1

Protein Analysis

142

Amino Acids

16.54

Weight (kDa)

5.31

Isoelectric Point (pI)

19.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08290 AT5G08290
fragaria_vesca	FvH4_4g37070 FvH4_4g37070
malus_domestica	MD13G1003900.v1.1
prunus_persica	Prupe.1G348600_v2.0.a1 Prupe.1G348600_v2.0.a1 Prupe.1G348600_v2.0.a1 Prupe.1G348600_v2.0.a1 Prupe.1G348600_v2.0.a1 Prupe.6G164200_v2.0.a1
pyrus_communis	pycom13g00330
rosa_chinensis	RchiOBHm_Chr4g0446821 RchiOBHm_Chr5g0009351
rosa_laevigata	RLG00000005627 RLG00000031654
rosa_multiflora	Rmu_sc0001753.1_g000020 Rmu_sc0002711.1_g000022 Rmu_sc0009480.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066740 Rroxscaffold_1G00067440 Rroxscaffold_5G00387190
rosa_rugosa	Rorug04G0441900
rosa_samantha	Rh4AG436300 Rh4DG444100 Rh5AG072800 Rh5BG069100 Rh5CG081700 Rh5DG069400
rosa_wichuraiana	Rw4G037330 Rw5G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	30
Acc36I	ACCTGC	1 cut(s)	30
AccI	GTMKAC	1 cut(s)	42
AciI	CCGC	2 cut(s)	17, 421
AcoI	YGGCCR	2 cut(s)	57, 91
AfaI	GTAC	3 cut(s)	132, 359, 419
AfiI	CCNNNNNNNGG	1 cut(s)	100
AflIII	ACRYGT	1 cut(s)	70
AgsI	TTSAA	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	1 cut(s)	223
AluI	AGCT	1 cut(s)	223
Alw26I	GTCTC	2 cut(s)	101, 344
AlwNI	CAGNNNCTG	1 cut(s)	146
AoxI	GGCC	3 cut(s)	36, 57, 91
ApeKI	GCWGC	1 cut(s)	13
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	400
BanII	GRGCYC	1 cut(s)	316
BccI	CCATC	3 cut(s)	27, 115, 241
BceAI	ACGGC	1 cut(s)	23
BciT130I	CCWGG	1 cut(s)	47
BcoDI	GTCTC	2 cut(s)	101, 344
BfaI	CTAG	1 cut(s)	134
BfuAI	ACCTGC	1 cut(s)	30
BisI	GCNGC	2 cut(s)	14, 17
BlsI	GCNGC	2 cut(s)	15, 18
Bme1390I	CCNGG	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	1 cut(s)	47
BmrI	ACTGGG	2 cut(s)	297, 319
BmsI	GCATC	1 cut(s)	146
BmuI	ACTGGG	2 cut(s)	297, 319
BpuEI	CTTGAG	1 cut(s)	302
BsaJI	CCNNGG	4 cut(s)	60, 280, 361, 399
BsaXI	ACNNNNNCTCC	2 cut(s)	341, 371
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse1I	ACTGG	2 cut(s)	292, 314
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	4 cut(s)	60, 280, 361, 399
BseGI	GGATG	3 cut(s)	38, 130, 233
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	2 cut(s)	292, 314
BsgI	GTGCAG	1 cut(s)	8
BshFI	GGCC	3 cut(s)	38, 59, 93
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	2 cut(s)	101, 344
BsmFI	GGGAC	1 cut(s)	116
BsnI	GGCC	3 cut(s)	38, 59, 93
Bsp1286I	GDGCHC	1 cut(s)	316
BspACI	CCGC	2 cut(s)	17, 421
BspANI	GGCC	3 cut(s)	38, 59, 93
BspCNI	CTCAG	1 cut(s)	41
BspLI	GGNNCC	1 cut(s)	198
BspMI	ACCTGC	1 cut(s)	30
BsrI	ACTGG	2 cut(s)	292, 314
BssECI	CCNNGG	4 cut(s)	60, 280, 361, 399
BssT1I	CCWWGG	2 cut(s)	280, 399
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	4 cut(s)	216, 241, 355, 362
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	116
BstDEI	CTNAG	1 cut(s)	28
BstDSI	CCRYGG	1 cut(s)	361
BstF5I	GGATG	3 cut(s)	38, 130, 233
BstMAI	GTCTC	2 cut(s)	101, 344
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 56, 143
BstNI	CCWGG	1 cut(s)	47
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	45
BsuRI	GGCC	3 cut(s)	38, 59, 93
BtgI	CCRYGG	1 cut(s)	361
BtsCI	GGATG	3 cut(s)	38, 130, 233
BtsIMutI	CAGTG	3 cut(s)	212, 285, 360
BveI	ACCTGC	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	116
CaiI	CAGNNNCTG	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	36
Csp6I	GTAC	3 cut(s)	131, 358, 418
CviAII	CATG	2 cut(s)	95, 115
CviJI	RGCY	5 cut(s)	38, 59, 93, 223, 314
CviKI_1	RGCY	5 cut(s)	38, 59, 93, 223, 314
CviQI	GTAC	3 cut(s)	131, 358, 418
DdeI	CTNAG	1 cut(s)	28
EaeI	YGGCCR	2 cut(s)	57, 91
Eco130I	CCWWGG	2 cut(s)	280, 399
Eco24I	GRGCYC	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	45
EcoT14I	CCWWGG	2 cut(s)	280, 399
EcoT38I	GRGCYC	1 cut(s)	316
ErhI	CCWWGG	2 cut(s)	280, 399
FaeI	CATG	2 cut(s)	98, 118
FaiI	YATR	7 cut(s)	83, 96, 116, 219, 228, 245, 272
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	2 cut(s)	94, 114
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	2 cut(s)	14, 17
FokI	GGATG	3 cut(s)	45, 137, 220
FriOI	GRGCYC	1 cut(s)	316
Fsp4HI	GCNGC	2 cut(s)	14, 17
FspBI	CTAG	1 cut(s)	134
GluI	GCNGC	2 cut(s)	14, 17
HaeIII	GGCC	3 cut(s)	38, 59, 93
Hin1II	CATG	2 cut(s)	98, 118
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	2 cut(s)	52, 87
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	3 cut(s)	43, 184, 358
Hpy188I	TCNGA	2 cut(s)	193, 257
Hpy188III	TCNNGA	2 cut(s)	30, 200
Hpy8I	GTNNAC	3 cut(s)	43, 184, 358
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	367
HpyCH4III	ACNGT	4 cut(s)	216, 241, 355, 362
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	4 cut(s)	25, 114, 118, 368
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 56, 143
HpyF3I	CTNAG	1 cut(s)	28
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	2 cut(s)	98, 118
LmnI	GCTCC	1 cut(s)	400
LpnPI	CCDG	9 cut(s)	15, 32, 35, 41, 59, 213, 273, 295, 371
LweI	GCATC	1 cut(s)	146
MaeI	CTAG	1 cut(s)	134
MaeII	ACGT	1 cut(s)	70
MboII	GAAGA	1 cut(s)	77
MhlI	GDGCHC	1 cut(s)	316
MluCI	AATT	1 cut(s)	153
MnlI	CCTC	3 cut(s)	55, 121, 187
MseI	TTAA	2 cut(s)	156, 306
MslI	CAYNNNNRTG	2 cut(s)	119, 242
MspR9I	CCNGG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	47
MwoI	GCNNNNNNNGC	3 cut(s)	22, 56, 143
NlaIII	CATG	2 cut(s)	98, 118
NlaIV	GGNNCC	1 cut(s)	198
NmeAIII	GCCGAG	1 cut(s)	85
NspI	RCATGY	1 cut(s)	118
PaeI	GCATGC	1 cut(s)	118
PaqCI	CACCTGC	1 cut(s)	30
PfeI	GAWTC	2 cut(s)	52, 87
PkrI	GCNGC	2 cut(s)	15, 18
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	36
PstNI	CAGNNNCTG	1 cut(s)	146
RsaI	GTAC	3 cut(s)	132, 359, 419
RsaNI	GTAC	3 cut(s)	131, 358, 418
RseI	CAYNNNNRTG	2 cut(s)	119, 242
SalI	GTCGAC	1 cut(s)	41
SaqAI	TTAA	2 cut(s)	156, 306
SatI	GCNGC	2 cut(s)	14, 17
Sau96I	GGNCC	1 cut(s)	36
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	316
SetI	ASST	7 cut(s)	24, 73, 132, 180, 198, 225, 282
SfaNI	GCATC	1 cut(s)	146
SmiMI	CAYNNNNRTG	2 cut(s)	119, 242
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
SphI	GCATGC	1 cut(s)	118
Sse9I	AATT	1 cut(s)	153
SsiI	CCGC	2 cut(s)	17, 421
SspMI	CTAG	1 cut(s)	134
StyD4I	CCNGG	1 cut(s)	45
StyI	CCWWGG	2 cut(s)	280, 399
TaaI	ACNGT	4 cut(s)	216, 241, 355, 362
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	1 cut(s)	42
TasI	AATT	1 cut(s)	153
TauI	GCSGC	1 cut(s)	19
TfiI	GAWTC	2 cut(s)	52, 87
Tru1I	TTAA	2 cut(s)	156, 306
Tru9I	TTAA	2 cut(s)	156, 306
TscAI	CASTG	3 cut(s)	219, 292, 360
TseI	GCWGC	1 cut(s)	13
TspDTI	ATGAA	1 cut(s)	325
TspRI	CASTG	3 cut(s)	219, 292, 360
XceI	RCATGY	1 cut(s)	118
XmiI	GTMKAC	1 cut(s)	42
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.