Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011121

Physical Location & Seq

Genomic Coordinates Forward (+)

2735911 .. 2743065

Gene Structure 7155 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G08470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3393 bp

ATGTCTCGCAATCGGCAAATCATCATCCCCGACGACGTGATGGAAACAGAAGCGGTGGTTAATACCGTCGCCGGCGTCGACTGTTTCGTCTCACTCCCTCGTCAATTACTACACGCGCTTCAATCCACCAGCTCCTCTCCTCTCCCTCCGCTTCTCCCTGTCGAGCTACGCTCCGGTGACCGCCGTTGGTCAGTTGCTTGGTCCGGCTCTAGCTCCTCCTCTTCTGCGATCGAGATCGCTCGAGTGTTTGCGGAAAGCATTTCGTTGCCGGATGGTACAGTTGTTAAAGTTCGTGTTCTTCCTAATGTGCCCAAGGCTACTTTAGTAACAGTCGAACCAGAGACTGAAGATGACTGGGAAGTTCTTGAGCTCAATGCTGAACTTGCCGAGGCAGCTATACTTAGTCAGGTGAGGATACTACATGAGACCATGAAATTCCCTTTGTGGTTGCATGACCGAACTGTGATAAGATTTTCTGTGGTTTCAACATTTCCATCAAAAGGGGTGGTACAACTTGTGCCAGGAACTGAAGTGGCTGTGGCTCCAAAGAGACGTGACAGAAATCTCAAAGCAAAAAAGAGTCAGGAAAAAGAATGTAACAATGTGAAGGCTCTACTACGTGTACAAGAGACTGATAGATCAGCCTTTCATGAAGCTGATGTCAAAGGATTTGAGCTAAGGGTAGCCCTCACGTCTATTGCCTATATTCATCCAGAAACTGCCAAGAAACACTCTCTAGAATCTCTTCAGTTGATTTCTGTATCCCCTAGAATACCTTTGAAAGGTAGTGCAAAGAAGGATGAAGCCTTAAATATGAAAAACAGTGAAGCTTCAAAGGTGGCCGAGAATGGTACTTCAAGCGCCAAGAAAGAGCCTCGTCAAGCAATTCTTCGTCTTGTCTTTTCAGATTTAGCTGCTAAAGGACATCTAATGATGGTCGAGTCTCTTCGTCTCTATCTAGGAGCAGGCCTACACTCATGGGTTTACTTAAGGGGATGCAATGTGAATGAAGACAAAGAAATTCCTGCTCTTTCACTTTCTCCTTGTGTCTTCAAGATTTCTGAAAATGAAAAGGTGCTGGATAAGGGTACGGATAGGCTTGGTAATAACAATTCTGTTAGAAAAAGCAGTCATCCACCGTCTGGCTTGAGCACCTATGTGGATGTTGTCGACTGGTCTGTGCACGATAAGGTTGTTACAGCTCTTTCATCTGAGGGTTTGCATGACGAAGGAAATCATGATAAGAATAAGAAAGGATTGGAATACCTTACTCGCCTGTGGTCATTGGCACAGCTTGATGCTATGGCGTCAGTCACAGGAGTTGATGTTAGTTCGTTAATTGTGGGAAGAGAAACGTTTTTCCATTTCGAAGTAAGAGGGCTCGAATCTTATAAATCCATAGACGGGCAGCCTTCTGTTAATGATCGTTGGGAAAGTGGGAAGAAGGATAAACACACTCCTTTAGAAATTTTGTACGTCATGACGGTCTCTGATGAGTCTTTGCTTGGTGATAAATTCGCTGGGTATGATCTTAGCCTGGATAGAAGTGAGAAGAGCGACAATGTGGTGCATATTGAGCCAGTGCTTGAGAAGATGAATCTTGGCGAGCCTATATATTTAAAGTCGGCTAAAGAGACACACTGCAATAAAGGTGTTTCCCCAGATATATCCTCCTTGACGTGGATGGGCCCAATCGTGTCGGATGTTATCAAGAGAATGACCGTGTTGTTGTCTCCTGCAGCTGGAATGTGGTTTAGCAAGTTCAAGATTCCATCACCTGGACATATTCTCATATATGGGCCTCCTGGTTCAGGAAAGACAATATTGGCAAGAGCTGCTGCAAAGTATTTCGAAGAACAGAAAGACTTGTTGGCACATGTGATTTTAGTATCCTGTTCTACACTTGCCTTGGAGAAGGTTCAACACATCCATCATGTCCTTTCTAGTGTAATAGCTGAGGGGTTGGAACATGCACCATCTGTCATCATTTTGGATGATCTTGATAGCATTATCTCATCGTCTTCTGATACTGAAGGAACACAAGCTTCGGTTGGGGTTACAATGCTTACAAAATTCCTAACAGATGTTATAGATGATTATGGGGAATACAGGAATTCCTCTTGTGGAATTGGCCCACTTGCATTCGTTGCTTCTGTCCAGTCTCTAGAGCAAATTCCACAGACATTGAGCTCATCAGGAAGGTTTGACTTCCATGTGCAACTGGCTGCTCCTGCTACCTCGGAACGTGGGGCCATACTGAAGCATGAGATACAGAAACGCCTTTTAGACTGTTCAGAAGACATTTTACTTAACTTAGCTGCTAAATGTGAAGGATATGATGCATATGACCTGGAAATATTGGTTGATAGAGCTGTTCATGCTGCCATTGGCCGGCATCTACCTTTAGAATCAAATATATCCAAATATAATTTGGTCAAAGAAGACTTTACTCGAGCTATGCATGATTTTGTGCCTGTTGCCATGCGTGACATCACAAAATCTGCCTCTGAAGGTGGTCGTTTGGGGTGGGAAGATGTGGGAGGTGTGACTGATATTAAAAATGCTATCAAAGAGATGATTGAGCTGCCATCAAAATTTCCAAAAATCTTTGCAAAATCTCCTCTGCGTTTGAGATCGAATGTTCTCTTGTATGGCCCACCCGGTTGTGGGAAGACTCACATTGTTGGTGCAGCTGCTGCAGCGTGTTCCCTACGGTTTATATCGGTGAAGGGGCCTGAGCTGTTAAACAAATACATTGGTGCATCTGAACAAGCGGTCCGTGATATATTTTCGAAAGCAGCAGCTGCAGCTCCATGCATACTCTTTTTCGATGAATTCGATTCAATTGCTCCCAAAAGAGGACATGATAATACTGGTGTAACTGATCGAGTTGTTAATCAATTTTTGACAGAACTGGATGGAGTTGAAGTTCTAACAGGGGTCTTTGTATTTGCTGCAACCAGTAGACCAGATTTACTTGATCCTGCCCTCCTAAGGCCTGGCCGGCTTGATCGTCTTCTTTTGTGCGACTTTCCTTCCCCACCAGAACGATTAGAGATTCTTACAGTTCTTTCTAGAAAGCTTCTGATGGCTGATGATATTGACCTAGAGCCTATAGCTTTGATGACTGAAGGCTTCAGTGGAGCTGATCTTCAAGCTCTTCTCTCAGATGCGCAACTTGCAGCTGTACACGAGTATCTGAACAGAGAAGATAAACCCGAGACCGGAACTACACCAATAATAACTGATCCTCTTCTGAAGTCGATTGCTTCTAAAACTAAACCATCGGTTTCCGAAACCGAGAAACAAAAGCTCTATGACATATATAGCCAGTTTCTGGATTCAAGAAAATCGTCAAGAGAAGCAAAGGGCAAAAGAGCAACCTTAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042886 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

AAA PEX-1N

Protein Analysis

1130

Amino Acids

123.84

Weight (kDa)

5.94

Isoelectric Point (pI)

44.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEX-1N	PF09262	109 - 182	2.1e-26	Peroxisome biogenesis factor 1, N-terminal
AAA	PF00004	596 - 741	5.5e-17	ATPase family associated with various cellular activities (AAA)
AAA	PF00004	881 - 1008	1e-39	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	1033 - 1069	3.5e-11	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08470 AT5G08470 AT5G08470 AT5G08470
fragaria_vesca	FvH4_3g12310
malus_domestica	MD05G1251500.v1.1 MD15G1400900.v1.1
prunus_persica	Prupe.4G112300_v2.0.a1
pyrus_communis	pycom05g22920
rosa_chinensis	RchiOBHm_Chr5g0020121
rosa_laevigata	RLG00000032502
rosa_multiflora	Rmu_sc0000116.1_g000006
rosa_roxburghii	Rroxscaffold_1G00058080
rosa_rugosa	Rorug05G0057400 Rorug05G0057400
rosa_samantha	Rh5AG147300 Rh5BG146900 Rh5CG158300 Rh5DG146200
rosa_wichuraiana	Rw5G013020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1392
AasI	GACNNNNNNGTC	1 cut(s)	86
Acc16I	TGCGCA	1 cut(s)	3174
AccB7I	CCANNNNNTGG	3 cut(s)	1142, 1778, 3337
AccI	GTMKAC	3 cut(s)	78, 1170, 2965
AccII	CGCG	1 cut(s)	116
AciI	CCGC	5 cut(s)	53, 149, 181, 251, 2774
AclI	AACGTT	1 cut(s)	1355
AclWI	GGATC	2 cut(s)	2975, 3242
AcoI	YGGCCR	3 cut(s)	840, 2389, 3001
AcsI	RAATTY	9 cut(s)	434, 1020, 1467, 1514, 2072, 2113, 2172, 2594, 2834
AcuI	CTGAAG	9 cut(s)	366, 549, 731, 2052, 2279, 2529, 3121, 3150, 3278
AcyI	GRCGYC	2 cut(s)	75, 1307
AfaI	GTAC	7 cut(s)	277, 510, 624, 853, 1090, 1475, 3189
AflII	CTTAAG	1 cut(s)	988
AflIII	ACRYGT	2 cut(s)	619, 1876
AjiI	CACGTC	4 cut(s)	37, 554, 693, 1680
AjnI	CCWGG	6 cut(s)	520, 1536, 1777, 1804, 2349, 2998
AjuI	GAANNNNNNNTTGG	2 cut(s)	1853, 1885
AleI	CACNNNNGTG	1 cut(s)	1157
AloI	GAACNNNNNNTCC	4 cut(s)	2760, 2792, 2913, 2945
Alw21I	GWGCWC	4 cut(s)	372, 1154, 1185, 2192
Alw44I	GTGCAC	1 cut(s)	1181
AlwI	GGATC	2 cut(s)	2975, 3242
AlwNI	CAGNNNCTG	6 cut(s)	344, 527, 719, 2696, 2804, 3337
Ama87I	CYCGRG	3 cut(s)	240, 2451, 3218
ApaI	GGGCCC	1 cut(s)	1691
ApaLI	GTGCAC	1 cut(s)	1181
ApoI	RAATTY	9 cut(s)	434, 1020, 1467, 1514, 2072, 2113, 2172, 2594, 2834
Asp700I	GAANNNNTTC	1 cut(s)	744
AspLEI	GCGC	3 cut(s)	118, 863, 3175
AspS9I	GGNCC	9 cut(s)	201, 1687, 1688, 1799, 2132, 2250, 2654, 2732, 2776
AsuC2I	CCSGG	1 cut(s)	2661
AsuHPI	GGTGA	5 cut(s)	188, 421, 1520, 1767, 2737
AsuII	TTCGAA	3 cut(s)	1368, 1851, 2792
AvaI	CYCGRG	3 cut(s)	240, 2451, 3218
AvaII	GGWCC	2 cut(s)	201, 2776
AxyI	CCTNAGG	1 cut(s)	2993
BaeGI	GKGCMC	3 cut(s)	312, 1185, 1691
BaeI	ACNNNNGTAYC	4 cut(s)	267, 300, 3179, 3212
BanII	GRGCYC	4 cut(s)	372, 1383, 1691, 2192
BarI	GAAGNNNNNNTAC	2 cut(s)	2289, 2321
BauI	CACGAG	1 cut(s)	3191
BbsI	GAAGAC	7 cut(s)	1017, 1042, 2013, 2304, 2448, 2678, 3008
Bbv12I	GWGCWC	4 cut(s)	372, 1154, 1185, 2192
BbvCI	CCTCAGC	1 cut(s)	1956
BceAI	ACGGC	1 cut(s)	168
BcgI	CGANNNNNNTGC	2 cut(s)	2828, 2862
BciT130I	CCWGG	6 cut(s)	522, 1538, 1779, 1806, 2351, 3000
BciVI	GTATCC	3 cut(s)	408, 772, 1900
BcnI	CCSGG	1 cut(s)	2661
BfaI	CTAG	8 cut(s)	210, 737, 768, 959, 1944, 2165, 3075, 3107
BfmI	CTRYAG	4 cut(s)	1737, 2697, 2805, 3114
BfoI	RGCGCY	1 cut(s)	864
BfrI	CTTAAG	1 cut(s)	988
BfuI	GTATCC	3 cut(s)	408, 772, 1900
BglI	GCCNNNNNGGC	1 cut(s)	3004
Bme1390I	CCNGG	7 cut(s)	522, 1538, 1779, 1806, 2351, 2661, 3000
Bme18I	GGWCC	2 cut(s)	201, 2776
BmeT110I	CYCGRG	3 cut(s)	240, 2451, 3218
BmgBI	CACGTC	4 cut(s)	37, 554, 693, 1680
BmgT120I	GGNCC	9 cut(s)	201, 1687, 1688, 1799, 2132, 2250, 2654, 2732, 2776
BmiI	GGNNCC	4 cut(s)	543, 1689, 2251, 2733
BmrFI	CCNGG	7 cut(s)	522, 1538, 1779, 1806, 2351, 2661, 3000
BmrI	ACTGGG	1 cut(s)	364
BmsI	GCATC	6 cut(s)	986, 1288, 2329, 2404, 2771, 3160
BmuI	ACTGGG	1 cut(s)	364
BpiI	GAAGAC	7 cut(s)	1017, 1042, 2013, 2304, 2448, 2678, 3008
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
Bpu10I	CCTNAGC	4 cut(s)	677, 1956, 2736, 3385
Bpu14I	TTCGAA	3 cut(s)	1368, 1851, 2792
BpuEI	CTTGAG	3 cut(s)	386, 1168, 1607
BpuMI	CCSGG	1 cut(s)	2661
BsaAI	YACGTR	1 cut(s)	620
BsaBI	GATNNNNATC	1 cut(s)	233
BsaHI	GRCGYC	2 cut(s)	75, 1307
BsaI	GGTCTC	3 cut(s)	419, 1492, 3215
BsaJI	CCNNGG	4 cut(s)	312, 387, 1908, 2238
BsaWI	WCCGGW	2 cut(s)	173, 3224
BsaXI	ACNNNNNCTCC	4 cut(s)	1311, 1341, 2913, 2943
Bse118I	RCCGGY	3 cut(s)	71, 2391, 3003
Bse1I	ACTGG	9 cut(s)	359, 1178, 1580, 2158, 2226, 2878, 2919, 2961, 3331
Bse21I	CCTNAGG	1 cut(s)	2993
Bse3DI	GCAATG	1 cut(s)	1006
Bse8I	GATNNNNATC	1 cut(s)	233
BseBI	CCWGG	6 cut(s)	522, 1538, 1779, 1806, 2351, 3000
BseDI	CCNNGG	4 cut(s)	312, 387, 1908, 2238
BseJI	GATNNNNATC	1 cut(s)	233
BseMI	GCAATG	1 cut(s)	1006
BseMII	CTCAG	4 cut(s)	1203, 1947, 2727, 3180
BseNI	ACTGG	9 cut(s)	359, 1178, 1580, 2158, 2226, 2878, 2919, 2961, 3331
BseRI	GAGGAG	5 cut(s)	124, 129, 205, 208, 2610
BseSI	GKGCMC	3 cut(s)	312, 1185, 1691
BseYI	CCCAGC	1 cut(s)	1520
BsgI	GTGCAG	1 cut(s)	2709
Bsh1236I	CGCG	1 cut(s)	116
Bsh1285I	CGRYCG	1 cut(s)	231
BsiEI	CGRYCG	1 cut(s)	231
BsiHKAI	GWGCWC	4 cut(s)	372, 1154, 1185, 2192
BsiHKCI	CYCGRG	3 cut(s)	240, 2451, 3218
BsiSI	CCGG	8 cut(s)	72, 174, 204, 269, 2392, 2661, 3004, 3225
BsmBI	CGTCTC	3 cut(s)	94, 544, 956
BsmI	GAATGC	1 cut(s)	2141
Bso31I	GGTCTC	3 cut(s)	419, 1492, 3215
BsoBI	CYCGRG	3 cut(s)	240, 2451, 3218
Bsp119I	TTCGAA	3 cut(s)	1368, 1851, 2792
Bsp120I	GGGCCC	1 cut(s)	1687
Bsp1286I	GDGCHC	7 cut(s)	312, 372, 1154, 1185, 1383, 1691, 2192
Bsp1407I	TGTACA	2 cut(s)	622, 3187
BspACI	CCGC	5 cut(s)	53, 149, 181, 251, 2774
BspCNI	CTCAG	4 cut(s)	1204, 1948, 2728, 3179
BspFNI	CGCG	1 cut(s)	116
BspHI	TCATGA	3 cut(s)	649, 1237, 1479
BspLI	GGNNCC	4 cut(s)	543, 1689, 2251, 2733
BspMAI	CTGCAG	3 cut(s)	1741, 2701, 2809
BspPI	GGATC	2 cut(s)	2975, 3242
BspQI	GCTCTTC	2 cut(s)	1547, 3165
BspT104I	TTCGAA	3 cut(s)	1368, 1851, 2792
BspTI	CTTAAG	1 cut(s)	988
BspTNI	GGTCTC	3 cut(s)	419, 1492, 3215
BsrDI	GCAATG	1 cut(s)	1006
BsrFI	RCCGGY	3 cut(s)	71, 2391, 3003
BsrGI	TGTACA	2 cut(s)	622, 3187
BsrI	ACTGG	9 cut(s)	359, 1178, 1580, 2158, 2226, 2878, 2919, 2961, 3331
BssAI	RCCGGY	3 cut(s)	71, 2391, 3003
BssECI	CCNNGG	4 cut(s)	312, 387, 1908, 2238
BssNI	GRCGYC	2 cut(s)	75, 1307
BssSI	CACGAG	1 cut(s)	3191
BssT1I	CCWWGG	2 cut(s)	312, 1908
Bst2BI	CACGAG	1 cut(s)	3191
Bst2UI	CCWGG	6 cut(s)	522, 1538, 1779, 1806, 2351, 3000
Bst6I	CTCTTC	7 cut(s)	226, 750, 951, 1342, 1547, 3165, 3258
BstACI	GRCGYC	2 cut(s)	75, 1307
BstAFI	CTTAAG	1 cut(s)	988
BstAPI	GCANNNNNTGC	4 cut(s)	1835, 2147, 2696, 2804
BstAUI	TGTACA	2 cut(s)	622, 3187
BstBAI	YACGTR	1 cut(s)	620
BstBI	TTCGAA	3 cut(s)	1368, 1851, 2792
BstC8I	GCNNGC	5 cut(s)	73, 967, 1607, 2393, 3005
BstEII	GGTNACC	1 cut(s)	176
BstENI	CCTNNNNNAGG	2 cut(s)	780, 1809
BstFNI	CGCG	1 cut(s)	116
BstH2I	RGCGCY	1 cut(s)	864
BstHHI	GCGC	3 cut(s)	118, 863, 3175
BstMCI	CGRYCG	1 cut(s)	231
BstNI	CCWGG	6 cut(s)	522, 1538, 1779, 1806, 2351, 3000
BstNSI	RCATGY	2 cut(s)	1880, 1973
BstPI	GGTNACC	1 cut(s)	176
BstSCI	CCNGG	7 cut(s)	520, 1536, 1777, 1804, 2349, 2659, 2998
BstSFI	CTRYAG	4 cut(s)	1737, 2697, 2805, 3114
BstSLI	GKGCMC	3 cut(s)	312, 1185, 1691
BstUI	CGCG	1 cut(s)	116
BstV2I	GAAGAC	7 cut(s)	1017, 1042, 2013, 2304, 2448, 2678, 3008
Bsu36I	CCTNAGG	1 cut(s)	2993
BsuI	GTATCC	3 cut(s)	408, 772, 1900
BtrI	CACGTC	4 cut(s)	37, 554, 693, 1680
BtsI	GCAGTG	1 cut(s)	1639
BtsIMutI	CAGTG	4 cut(s)	829, 1587, 1639, 3145
Cac8I	GCNNGC	5 cut(s)	73, 967, 1607, 2393, 3005
CaiI	CAGNNNCTG	6 cut(s)	344, 527, 719, 2696, 2804, 3337
CciI	TCATGA	3 cut(s)	649, 1237, 1479
CfoI	GCGC	3 cut(s)	118, 863, 3175
Cfr10I	RCCGGY	3 cut(s)	71, 2391, 3003
Cfr13I	GGNCC	9 cut(s)	201, 1687, 1688, 1799, 2132, 2250, 2654, 2732, 2776
CpoI	CGGWCCG	1 cut(s)	2776
CseI	GACGC	2 cut(s)	64, 1296
Csp6I	GTAC	7 cut(s)	276, 509, 623, 852, 1089, 1474, 3188
CspCI	CAANNNNNGTGG	4 cut(s)	486, 521, 2166, 2201
CspI	CGGWCCG	1 cut(s)	2776
CviQI	GTAC	7 cut(s)	276, 509, 623, 852, 1089, 1474, 3188
DraI	TTTAAA	1 cut(s)	1620
DrdI	GACNNNNNNGTC	1 cut(s)	86
DseDI	GACNNNNNNGTC	1 cut(s)	86
EaeI	YGGCCR	3 cut(s)	840, 2389, 3001
Eam1104I	CTCTTC	7 cut(s)	226, 750, 951, 1342, 1547, 3165, 3258
EarI	CTCTTC	7 cut(s)	226, 750, 951, 1342, 1547, 3165, 3258
Ecl136II	GAGCTC	2 cut(s)	370, 2190
Eco130I	CCWWGG	2 cut(s)	312, 1908
Eco147I	AGGCCT	2 cut(s)	969, 2998
Eco24I	GRGCYC	4 cut(s)	372, 1383, 1691, 2192
Eco31I	GGTCTC	3 cut(s)	419, 1492, 3215
Eco47I	GGWCC	2 cut(s)	201, 2776
Eco53kI	GAGCTC	2 cut(s)	370, 2190
Eco57I	CTGAAG	9 cut(s)	366, 549, 731, 2052, 2279, 2529, 3121, 3150, 3278
Eco81I	CCTNAGG	1 cut(s)	2993
Eco88I	CYCGRG	3 cut(s)	240, 2451, 3218
Eco91I	GGTNACC	1 cut(s)	176
EcoICRI	GAGCTC	2 cut(s)	370, 2190
EcoNI	CCTNNNNNAGG	2 cut(s)	780, 1809
EcoO109I	RGGNCCY	1 cut(s)	2732
EcoO65I	GGTNACC	1 cut(s)	176
EcoRI	GAATTC	2 cut(s)	2113, 2834
EcoRII	CCWGG	6 cut(s)	520, 1536, 1777, 1804, 2349, 2998
EcoT14I	CCWWGG	2 cut(s)	312, 1908
EcoT22I	ATGCAT	3 cut(s)	2344, 2463, 2819
EcoT38I	GRGCYC	4 cut(s)	372, 1383, 1691, 2192
ErhI	CCWWGG	2 cut(s)	312, 1908
Esp3I	CGTCTC	3 cut(s)	94, 544, 956
FalI	AAGNNNNNCTT	2 cut(s)	873, 905
FauNDI	CATATG	1 cut(s)	2344
FblI	GTMKAC	3 cut(s)	78, 1170, 2965
FriOI	GRGCYC	4 cut(s)	372, 1383, 1691, 2192
FspBI	CTAG	8 cut(s)	210, 737, 768, 959, 1944, 2165, 3075, 3107
FspI	TGCGCA	1 cut(s)	3174
GlaI	GCGC	3 cut(s)	117, 862, 3174
GsaI	CCCAGC	1 cut(s)	1524
HaeII	RGCGCY	1 cut(s)	864
HapII	CCGG	8 cut(s)	72, 174, 204, 269, 2392, 2661, 3004, 3225
HgaI	GACGC	2 cut(s)	64, 1296
HhaI	GCGC	3 cut(s)	118, 863, 3175
Hin1I	GRCGYC	2 cut(s)	75, 1307
Hin6I	GCGC	3 cut(s)	116, 861, 3173
HinP1I	GCGC	3 cut(s)	116, 861, 3173
HincII	GTYRAC	2 cut(s)	79, 1171
HindII	GTYRAC	2 cut(s)	79, 1171
HindIII	AAGCTT	3 cut(s)	828, 2043, 3080
HpaII	CCGG	8 cut(s)	72, 174, 204, 269, 2392, 2661, 3004, 3225
HphI	GGTGA	5 cut(s)	188, 421, 1520, 1767, 2737
Hpy166II	GTNNAC	7 cut(s)	79, 623, 985, 1171, 1183, 2966, 3190
Hpy8I	GTNNAC	7 cut(s)	79, 623, 985, 1171, 1183, 2966, 3190
Hpy99I	CGWCG	4 cut(s)	35, 38, 71, 80
HpyCH4IV	ACGT	8 cut(s)	36, 553, 619, 692, 1355, 1476, 1679, 2245
HpySE526I	ACGT	8 cut(s)	36, 553, 619, 692, 1355, 1476, 1679, 2245
Hsp92I	GRCGYC	2 cut(s)	75, 1307
HspAI	GCGC	3 cut(s)	116, 861, 3173
KroI	GCCGGC	3 cut(s)	71, 2391, 3003
KroNI	GCCGGC	3 cut(s)	73, 2393, 3005
LguI	GCTCTTC	2 cut(s)	1547, 3165
LmnI	GCTCC	9 cut(s)	137, 176, 218, 547, 962, 2233, 2815, 2854, 3143
LweI	GCATC	6 cut(s)	986, 1288, 2329, 2404, 2771, 3160
MaeI	CTAG	8 cut(s)	210, 737, 768, 959, 1944, 2165, 3075, 3107
MaeII	ACGT	8 cut(s)	36, 553, 619, 692, 1355, 1476, 1679, 2245
MfeI	CAATTG	1 cut(s)	2844
MhlI	GDGCHC	7 cut(s)	312, 372, 1154, 1185, 1383, 1691, 2192
MlyI	GAGTC	4 cut(s)	589, 950, 1505, 2668
MmeI	TCCRAC	2 cut(s)	1680, 1944
Mph1103I	ATGCAT	3 cut(s)	2344, 2463, 2819
MreI	CGCCGGCG	1 cut(s)	71
MroNI	GCCGGC	3 cut(s)	71, 2391, 3003
MroXI	GAANNNNTTC	1 cut(s)	744
MslI	CAYNNNNRTG	1 cut(s)	1157
MspA1I	CMGCKG	4 cut(s)	1742, 2693, 2804, 3185
MspCI	CTTAAG	1 cut(s)	988
MspI	CCGG	8 cut(s)	72, 174, 204, 269, 2392, 2661, 3004, 3225
MspR9I	CCNGG	7 cut(s)	522, 1538, 1779, 1806, 2351, 2661, 3000
MunI	CAATTG	1 cut(s)	2844
Mva1269I	GAATGC	1 cut(s)	2141
MvaI	CCWGG	6 cut(s)	522, 1538, 1779, 1806, 2351, 3000
MvnI	CGCG	1 cut(s)	116
NaeI	GCCGGC	3 cut(s)	73, 2393, 3005
NciI	CCSGG	1 cut(s)	2661
NdeI	CATATG	1 cut(s)	2344
NgoMIV	GCCGGC	3 cut(s)	71, 2391, 3003
NlaIV	GGNNCC	4 cut(s)	543, 1689, 2251, 2733
NmeAIII	GCCGAG	2 cut(s)	412, 868
NmuCI	GTSAC	5 cut(s)	176, 554, 1312, 2486, 2545
NsbI	TGCGCA	1 cut(s)	3174
NsiI	ATGCAT	3 cut(s)	2344, 2463, 2819
NspI	RCATGY	2 cut(s)	1880, 1973
NspV	TTCGAA	3 cut(s)	1368, 1851, 2792
OliI	CACNNNNGTG	1 cut(s)	1157
PaeR7I	CTCGAG	2 cut(s)	240, 2451
PagI	TCATGA	3 cut(s)	649, 1237, 1479
PceI	AGGCCT	2 cut(s)	969, 2998
PciI	ACATGT	1 cut(s)	1876
PciSI	GCTCTTC	2 cut(s)	1547, 3165
PcsI	WCGNNNNNNNCGW	3 cut(s)	75, 84, 2835
PctI	GAATGC	1 cut(s)	2141
PdiI	GCCGGC	3 cut(s)	73, 2393, 3005
PdmI	GAANNNNTTC	1 cut(s)	744
PfeI	GAWTC	8 cut(s)	740, 1385, 1597, 1768, 2408, 2840, 3058, 3341
PflMI	CCANNNNNTGG	3 cut(s)	1142, 1778, 3337
Ple19I	CGATCG	1 cut(s)	231
PleI	GAGTC	4 cut(s)	588, 949, 1504, 2668
PpsI	GAGTC	4 cut(s)	588, 949, 1504, 2668
Ppu21I	YACGTR	1 cut(s)	620
PscI	ACATGT	1 cut(s)	1876
PsiI	TTATAA	1 cut(s)	1392
Psp124BI	GAGCTC	2 cut(s)	372, 2192
Psp1406I	AACGTT	1 cut(s)	1355
Psp6I	CCWGG	6 cut(s)	520, 1536, 1777, 1804, 2349, 2998
PspEI	GGTNACC	1 cut(s)	176
PspFI	CCCAGC	1 cut(s)	1520
PspGI	CCWGG	6 cut(s)	520, 1536, 1777, 1804, 2349, 2998
PspN4I	GGNNCC	4 cut(s)	543, 1689, 2251, 2733
PspOMI	GGGCCC	1 cut(s)	1687
PspPI	GGNCC	9 cut(s)	201, 1687, 1688, 1799, 2132, 2250, 2654, 2732, 2776
PspXI	VCTCGAGB	2 cut(s)	240, 2451
PstI	CTGCAG	3 cut(s)	1741, 2701, 2809
PstNI	CAGNNNCTG	6 cut(s)	344, 527, 719, 2696, 2804, 3337
PvuI	CGATCG	1 cut(s)	231
PvuII	CAGCTG	4 cut(s)	1742, 2693, 2804, 3185
RsaI	GTAC	7 cut(s)	277, 510, 624, 853, 1090, 1475, 3189
RsaNI	GTAC	7 cut(s)	276, 509, 623, 852, 1089, 1474, 3188
RseI	CAYNNNNRTG	1 cut(s)	1157
Rsr2I	CGGWCCG	1 cut(s)	2776
RsrII	CGGWCCG	1 cut(s)	2776
SacI	GAGCTC	2 cut(s)	372, 2192
SalI	GTCGAC	2 cut(s)	77, 1169
SapI	GCTCTTC	2 cut(s)	1547, 3165
Sau96I	GGNCC	9 cut(s)	201, 1687, 1688, 1799, 2132, 2250, 2654, 2732, 2776
SchI	GAGTC	4 cut(s)	589, 950, 1505, 2668
ScrFI	CCNGG	7 cut(s)	522, 1538, 1779, 1806, 2351, 2661, 3000
SduI	GDGCHC	7 cut(s)	312, 372, 1154, 1185, 1383, 1691, 2192
SfaNI	GCATC	6 cut(s)	986, 1288, 2329, 2404, 2771, 3160
SfcI	CTRYAG	4 cut(s)	1737, 2697, 2805, 3114
Sfr274I	CTCGAG	2 cut(s)	240, 2451
SfuI	TTCGAA	3 cut(s)	1368, 1851, 2792
SgrAI	CRCCGGYG	1 cut(s)	71
SinI	GGWCC	2 cut(s)	201, 2776
SlaI	CTCGAG	2 cut(s)	240, 2451
SmiMI	CAYNNNNRTG	1 cut(s)	1157
SmlI	CTYRAG	6 cut(s)	240, 365, 988, 1147, 1586, 2451
SmoI	CTYRAG	6 cut(s)	240, 365, 988, 1147, 1586, 2451
SseBI	AGGCCT	2 cut(s)	969, 2998
SsiI	CCGC	5 cut(s)	53, 149, 181, 251, 2774
SspI	AATATT	2 cut(s)	1824, 2358
SspMI	CTAG	8 cut(s)	210, 737, 768, 959, 1944, 2165, 3075, 3107
SstI	GAGCTC	2 cut(s)	372, 2192
StuI	AGGCCT	2 cut(s)	969, 2998
StyD4I	CCNGG	7 cut(s)	520, 1536, 1777, 1804, 2349, 2659, 2998
StyI	CCWWGG	2 cut(s)	312, 1908
TaiI	ACGT	8 cut(s)	39, 556, 622, 695, 1358, 1479, 1682, 2248
TaqII	GACCGA	1 cut(s)	471
TatI	WGTACW	2 cut(s)	622, 3187
TfiI	GAWTC	8 cut(s)	740, 1385, 1597, 1768, 2408, 2840, 3058, 3341
TscAI	CASTG	4 cut(s)	829, 1587, 1646, 3145
TseFI	GTSAC	5 cut(s)	176, 554, 1312, 2486, 2545
Tsp45I	GTSAC	5 cut(s)	176, 554, 1312, 2486, 2545
TspGWI	ACGGA	2 cut(s)	1106, 2768
TspRI	CASTG	4 cut(s)	829, 1587, 1646, 3145
Van91I	CCANNNNNTGG	3 cut(s)	1142, 1778, 3337
Vha464I	CTTAAG	1 cut(s)	988
VneI	GTGCAC	1 cut(s)	1181
VpaK11BI	GGWCC	2 cut(s)	201, 2776
XagI	CCTNNNNNAGG	2 cut(s)	780, 1809
XapI	RAATTY	9 cut(s)	434, 1020, 1467, 1514, 2072, 2113, 2172, 2594, 2834
XbaI	TCTAGA	3 cut(s)	736, 2164, 3074
XceI	RCATGY	2 cut(s)	1880, 1973
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2428
XhoI	CTCGAG	2 cut(s)	240, 2451
XmiI	GTMKAC	3 cut(s)	78, 1170, 2965
XmnI	GAANNNNTTC	1 cut(s)	744
XspI	CTAG	8 cut(s)	210, 737, 768, 959, 1944, 2165, 3075, 3107
Zsp2I	ATGCAT	3 cut(s)	2344, 2463, 2819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.