MD15G1400900.v1.1

establishment of protein localization to peroxisome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011121
Physical Location & Seq
Forward (+)
50187639 .. 50188501
863 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1400900.v1.1.491

Sequence Viewer

Length: 279 bp
ATGCTGCCAGAAATGCATATGAGCTTGAAGGTGGTCGATCCTAAGATGGCTGATCCTGTGACCATTAATTCAGTTAGGGAGAGAACATTTGGAAAAGACATCAGTTCTGATGCATCACCTTTGTGTTGGATGGAAACAATTCCTTCTGACGTTTCAAACAGAATGTTGGTGTTGTTAACTCCTGCTTCTGGGGCTTGGTTCAGTTCATGTGACCTTCCTCCCCCCGGACACGTTCTGCTATATGGAGCTCCTGTGAGTTCATCATATTTTCACATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0001881 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007017 GO:0007031 GO:0007275 GO:0007276 GO:0007283 GO:0007399 GO:0007417 GO:0007422 GO:0008022 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0010001 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016462 GO:0016558 GO:0016562 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017038 GO:0017076 GO:0017111 GO:0019395 GO:0019752 GO:0019953 GO:0021782 GO:0022008 GO:0022412 GO:0022414 GO:0023051 GO:0030154 GO:0030258 GO:0030554 GO:0031090 GO:0031903 GO:0032501 GO:0032502 GO:0032504 GO:0032553 GO:0032555 GO:0032559 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0035639 GO:0036094 GO:0042063 GO:0042579 GO:0042623 GO:0042886 GO:0043112 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044743 GO:0044877 GO:0045184 GO:0046395 GO:0046907 GO:0046982 GO:0046983 GO:0048137 GO:0048232 GO:0048468 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0051179 GO:0051234 GO:0051301 GO:0051640 GO:0051641 GO:0051649 GO:0051704 GO:0055085 GO:0055114 GO:0060151 GO:0060152 GO:0065002 GO:0065007 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901575
KEGG Pathways
Metabolic & Signaling
ko01521 ko04010 ko04014 ko04015 ko04144 ko04146 ko04151 ko04550 ko04810 ko05200 ko05215 ko05226 ko05230 map01521 map04010 map04014 map04015 map04144 map04146 map04151 map04550 map04810 map05200 map05215 map05226 map05230
Pfam Domains
Protein Families
AAA PEX-1N PEX-2N

Protein Analysis

93

Amino Acids

10.08

Weight (kDa)

5.37

Isoelectric Point (pI)

67.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011121)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08470 AT5G08470 AT5G08470 AT5G08470
fragaria_vesca FvH4_3g12310
malus_domestica MD05G1251500.v1.1 MD15G1400900.v1.1
prunus_persica Prupe.4G112300_v2.0.a1
pyrus_communis pycom05g22920
rosa_chinensis RchiOBHm_Chr5g0020121
rosa_laevigata RLG00000032502
rosa_multiflora Rmu_sc0000116.1_g000006
rosa_roxburghii Rroxscaffold_1G00058080
rosa_rugosa Rorug05G0057400 Rorug05G0057400
rosa_samantha Rh5AG147300 Rh5BG146900 Rh5CG158300 Rh5DG146200
rosa_wichuraiana Rw5G013020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 32, 47
AfiI CCNNNNNNNGG 2 cut(s) 188, 224
AflIII ACRYGT 1 cut(s) 229
AgsI TTSAA 2 cut(s) 28, 156
AleI CACNNNNGTG 1 cut(s) 121
AluBI AGCT 2 cut(s) 24, 248
AluI AGCT 2 cut(s) 24, 248
Alw21I GWGCWC 1 cut(s) 250
AlwI GGATC 2 cut(s) 32, 47
ApeKI GCWGC 1 cut(s) 4
AseI ATTAAT 1 cut(s) 66
Asp700I GAANNNNTTC 1 cut(s) 138
AsuC2I CCSGG 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 108
BanII GRGCYC 1 cut(s) 250
Bbv12I GWGCWC 1 cut(s) 250
BccI CCATC 2 cut(s) 40, 124
BcnI CCSGG 1 cut(s) 225
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 225
BmrFI CCNGG 1 cut(s) 225
BmsI GCATC 2 cut(s) 100, 122
BpuMI CCSGG 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 224
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 1 cut(s) 135
BseLI CCNNNNNNNGG 2 cut(s) 188, 224
BsiHKAI GWGCWC 1 cut(s) 250
BsiSI CCGG 1 cut(s) 225
BslI CCNNNNNNNGG 2 cut(s) 188, 224
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 2 cut(s) 37, 52
BspPI GGATC 2 cut(s) 32, 47
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 2 cut(s) 37, 52
BstDEI CTNAG 1 cut(s) 42
BstF5I GGATG 1 cut(s) 135
BstKTI GATC 2 cut(s) 40, 55
BstMBI GATC 2 cut(s) 37, 52
BstMWI GCNNNNNNNGC 2 cut(s) 13, 191
BstSCI CCNGG 1 cut(s) 223
BtsCI GGATG 1 cut(s) 135
CviAII CATG 1 cut(s) 207
CviJI RGCY 4 cut(s) 24, 50, 194, 248
CviKI_1 RGCY 4 cut(s) 24, 50, 194, 248
DdeI CTNAG 1 cut(s) 42
DpnI GATC 2 cut(s) 39, 54
DpnII GATC 2 cut(s) 37, 52
Ecl136II GAGCTC 1 cut(s) 248
Eco24I GRGCYC 1 cut(s) 250
Eco53kI GAGCTC 1 cut(s) 248
EcoICRI GAGCTC 1 cut(s) 248
EcoT22I ATGCAT 2 cut(s) 18, 115
EcoT38I GRGCYC 1 cut(s) 250
FaeI CATG 1 cut(s) 210
FaiI YATR 6 cut(s) 18, 20, 208, 241, 243, 265
FatI CATG 1 cut(s) 206
FauNDI CATATG 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 1 cut(s) 142
FriOI GRGCYC 1 cut(s) 250
Fsp4HI GCNGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 5
HapII CCGG 1 cut(s) 225
Hin1II CATG 1 cut(s) 210
HincII GTYRAC 1 cut(s) 177
HindII GTYRAC 1 cut(s) 177
HpaI GTTAAC 1 cut(s) 177
HpaII CCGG 1 cut(s) 225
HphI GGTGA 1 cut(s) 108
Hpy166II GTNNAC 1 cut(s) 177
Hpy188I TCNGA 2 cut(s) 109, 148
Hpy8I GTNNAC 1 cut(s) 177
HpyAV CCTTC 3 cut(s) 22, 153, 224
HpyCH4IV ACGT 2 cut(s) 150, 231
HpyCH4V TGCA 2 cut(s) 16, 113
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 191
HpyF3I CTNAG 1 cut(s) 42
HpySE526I ACGT 2 cut(s) 150, 231
Hsp92II CATG 1 cut(s) 210
KspAI GTTAAC 1 cut(s) 177
Kzo9I GATC 2 cut(s) 37, 52
LmnI GCTCC 2 cut(s) 245, 253
LpnPI CCDG 6 cut(s) 21, 69, 174, 195, 238, 264
LweI GCATC 2 cut(s) 100, 122
MaeII ACGT 2 cut(s) 150, 231
MaeIII GTNAC 2 cut(s) 58, 209
MalI GATC 2 cut(s) 39, 54
MboI GATC 2 cut(s) 37, 52
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 2 cut(s) 67, 138
MmeI TCCRAC 1 cut(s) 107
MnlI CCTC 1 cut(s) 228
Mph1103I ATGCAT 2 cut(s) 18, 115
MroXI GAANNNNTTC 1 cut(s) 138
MseI TTAA 3 cut(s) 66, 176, 277
MslI CAYNNNNRTG 1 cut(s) 121
MspI CCGG 1 cut(s) 225
MspR9I CCNGG 1 cut(s) 225
MwoI GCNNNNNNNGC 2 cut(s) 13, 191
NciI CCSGG 1 cut(s) 225
NdeI CATATG 1 cut(s) 18
NdeII GATC 2 cut(s) 37, 52
NlaIII CATG 1 cut(s) 210
NmuCI GTSAC 2 cut(s) 58, 209
NsiI ATGCAT 2 cut(s) 18, 115
OliI CACNNNNGTG 1 cut(s) 121
PdmI GAANNNNTTC 1 cut(s) 138
PkrI GCNGC 1 cut(s) 6
PshBI ATTAAT 1 cut(s) 66
Psp124BI GAGCTC 1 cut(s) 250
RseI CAYNNNNRTG 1 cut(s) 121
SacI GAGCTC 1 cut(s) 250
SaqAI TTAA 3 cut(s) 66, 176, 277
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 2 cut(s) 37, 52
ScrFI CCNGG 1 cut(s) 225
SduI GDGCHC 1 cut(s) 250
SetI ASST 7 cut(s) 26, 33, 121, 153, 216, 234, 250
SfaNI GCATC 2 cut(s) 100, 122
SmiMI CAYNNNNRTG 1 cut(s) 121
Sse9I AATT 2 cut(s) 67, 138
SstI GAGCTC 1 cut(s) 250
StyD4I CCNGG 1 cut(s) 223
TaiI ACGT 2 cut(s) 153, 234
TaqI TCGA 1 cut(s) 36
TasI AATT 2 cut(s) 67, 138
Tru1I TTAA 3 cut(s) 66, 176, 277
Tru9I TTAA 3 cut(s) 66, 176, 277
TseFI GTSAC 2 cut(s) 58, 209
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 2 cut(s) 58, 209
TspDTI ATGAA 2 cut(s) 195, 249
VspI ATTAAT 1 cut(s) 66
XmnI GAANNNNTTC 1 cut(s) 138
Zsp2I ATGCAT 2 cut(s) 18, 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.