Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0011121

Physical Location & Seq

Genomic Coordinates Forward (+)

15902528 .. 15909444

Gene Structure 6917 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032502

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3366 bp

ATGGAGTTCGAGGTGAAATTCGTCGGTGCCATAGAGCACTGCTACGTCTCCCTCCCCCTCCCCCTAATTCAAACCCTCCACTCCTCCTCCACATCTCTCCCTCCCGTCCTCGCTCTCGACCTCCGCTCCTCCTCAAACGACGACCGCTGGACCGTCGCTTGGTCCGGCGCCACCTCCTCTTCTCCCGCAATCGAGGTAGCTCAGCAATTCGGAGAGTGTATTTCGCTGCCGGATCGTGCTAGGGTTCAGGTGCGAGCTCTTTCGAATGTGGCGAAAGCTACTTTGGTGACGATTGAGCCGTCTACTGAGGATGATTGGGAGGTCATGGAGCTTAACTCTGAGCTTGCTGAGGCTGCTATATTGAATCAGGTGAGGGTTGTTCATGAAGGAATGAAGTTTCCTTTGTGGTTGCATGGCCGTACCACCATTACATTTCTTGTTGTTTCAACCTTTCCCAAGAAATCGGTGGTGGAACTGGTGCCAGGGACTGAAGTAGCAGTTGCTCCAAAGAGACGCAAGAATGTCAACTCGAATGGGGATGGAATGCTCTCGTCTAATATTTCAAAAGCACTACTCCGTGTTCAAGATGCAGACAGGAGATTAGTTCACCAAAGTAATGTGAAAGGTGTTGAGCTTGGAGTTGTTCTCACTTCTGTTGCTATTATTCACCCAGAAACAGCAAAAATGTTCTCATTACAGTCTCTTGAGTTGGTAGCTGTCGTGCCAAGATTCGTACGAAAAGAAAGCATGAAAAATTCTGAAACTGATGGGTTGAGAATGAGAAGTCCAACAACAAAGGAATCTAGTGTTAGAGTTCCAAATGACAAAAAGGACAATCGTCAAGCAGTAGTTCGGCTGTTGATTTCCGACTCAGTTGCTAAAGGGCATCTAATGATTGCCCAGTCTCTTCGCCTCTACCTTATGGCTGGTTTGCATTCATGGGTTTATTTAAAGGGATGCGGTGCTATTTTGAAGAATAACATGCCATTATGTTCACTTTCACCCTGCCACTTCAAGATATCTCCTAAAGAGAAAGCTGTTGAAAGAAATGGTTTACAAGTTCTTGACAGGCATATAACTCGTAAGAAGAATGACATGCTTCTAACACCTGGCTCAAGCACCTATATAGATGTTGTTGATTGGTCAACCCATGACAAAGTTGTTGCTGATTTTTCTTGCAAATCTTCTTTCAAAGAGGATGAAGAACCTGCCCATCAGTCTGACAAGGGAAATGGAGTAGAAAGTCTTCTTAAAGCTTGGATCCTTGCACAGTTAGATGCTATTACTTCCAAAGCAGGAGTAGAAGTTAATTCATTGATTTTAGGAAAAGAAACTTTGCTTCATTTTGAAGTGAAAGGGAACCAGTCTGGGATTGAGGAATCAGCAAATGATTTCCTGGCAAACAATAATATGAATCCTGAAGTTCCAGTTGAAATCTTGTATGTATTGACAATTTCCAAGGAATCCCAATGTGGCGGAAATGTGTATGAGCTTGTATTTGATGAAAGAAACAAAGGCAACAACAATAATCTTGACTCACTTGAAAAGCATATGGGTGAACCTGTGTCCTTTTATTCAGTAAGAGAAAGAATGTCTGACAAGGGCATTACTTCTGATATATCTTCCTTGAGCTGGATGGGGGCAACTGCTTCTGAAGTTTTAAATAGAATGTTGGTGTTGCTAACTCCTGCTTATGGGTTATGGTTTAGTTCACATAATCTTCCTCTCCCTGGACATGTTCTGATACATGGACCTCCTGGTTCTGGAAAGACATTATTAGCGAGAACTATTGGAAAATGTCTTGAGGAACATGGAGGCCTTCTAGCACACATAGTTTATGTATGCTGTTCTCAACTTGCCATGGAAAAGGCCTTGACCGTTCGCCAAGCACTCTCTAGCTACATATCTGAGGCTTTAGATCATGCACCATCTCTTGTAATTCTTGACGATCTTGATAGCATTGTTTCAACCTCTTCGGACTTAGAAGGATCTCAACCTTCAACTTCTGTCGTAGCACTCGCAGAATTTCTCATAGACATTATGGATGAATATGGGGAAAAAAGGAAGATCTCCTGTGGAATTGGCCCCCTTGCTTTCATAGCTTCCTCAAAGTCATTAGAGAGTATACCACAGTCATTGAGCTCTTCAGGTAGATTTGACTTTCATGTCCAAATGCCTGCTCCTGCTGCCTCAGAACGTGCAGCCATTTTGAAACATGAAATTCAGAGGCGTTGCTTGCAATGTTCTGATGAAATCTTACAAGATGTAGCCTTCAAATGTGATGGCTATGATGCATATGATCTGGAAATCTTGGTTGATAGAACTGTCCATGCCGCCATAGGTCGTTTTCTGCCGTATCAGTTTGCTTCTGATGAGCGTGAAAAACCCACTTTACTTGCGGATGATTTCTCTCGGGCAATGCATGAGTTCCTTCCGGTTGCCATGCGTGACATCACTAAGTCTGCTTCAGAAGGGGGCCGTTCTGGGTGGGATGACGTTGGTGGTCTTGTTGACATTCGCAATGCAATTAAAGAGATGATTGAATTGCCTTCAAAATTCCCAAATATCTTTGCAAAAGCTCCTTTAAGGTTGCGGTCAAATGTATTATTGTATGGGCCACCTGGCTGTGGAAAAACGCATATAGTTGGTTCTGCTGCTGCTGCCTGTTCACTACGATTTATATCAGTCAAAGGACCTGAGCTGTTGAATAAATACATTGGTGCTTCTGAGCAAGCTGTTCGGGATATATTCTCCAAAGCAGCTGCTGCTGCACCATGCCTTCTCTTTTTTGACGAATTTGATTCTATTGCCCCAAAAAGGGGACATGACAATACTGGAGTAACTGATCGTGTTGTCAATCAGTTTCTGACTGAATTGGATGGTGTTGAAGTTTTGACTGGTGTTTTTGTGTTTGCTGCAACAAGTAGACCAGATTTGCTTGATGCTGCACTTCTGAGACCTGGTAGGCTGGATCGCCTTCTGTTTTGTGATTTTCCATCTCCGCATGAAAGGTTGGATATTCTAACAGTCCTTTCGAAAAAGCTACCTCTGGATGGTGATGTGGATTTATCTGCCATAGCTGATATGACTGAGGGATATAGTGGGGCTGACCTTCAAGCACTTCTCTCAGATGCTCAGCTTGCAGCAGTGCATGAAATTCTGGATGGTACATATACCAATGATCCAGGGAGAAAGCCAGTTATTTCTGATGCTCTCTTGAAGTCTACTGCTTCCAGGACGAGACCATCTGTTTCTGAGGCTGAGAAGCAAAAATTTTACGACATTTACAGCCAGTTCTTGGATTCAAAAAGATCTGTTGCCGCACAGTCAAGAGATGCAAAAGGCAAGAGAGCAACCCTAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042886 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

AAA PEX-1N

Protein Analysis

1122

Amino Acids

122.56

Weight (kDa)

5.84

Isoelectric Point (pI)

48.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEX-1N	PF09262	96 - 169	1.8e-26	Peroxisome biogenesis factor 1, N-terminal
NPHP3_N	PF24883	565 - 677	2.4e-06	Nephrocystin 3, N-terminal
AAA_16	PF13191	575 - 677	2.8e-06	AAA ATPase domain
AAA	PF00004	580 - 726	1e-15	ATPase family associated with various cellular activities (AAA)
AAA	PF00004	868 - 996	2.4e-38	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	1020 - 1060	6.5e-13	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08470 AT5G08470 AT5G08470 AT5G08470
fragaria_vesca	FvH4_3g12310
malus_domestica	MD05G1251500.v1.1 MD15G1400900.v1.1
prunus_persica	Prupe.4G112300_v2.0.a1
pyrus_communis	pycom05g22920
rosa_chinensis	RchiOBHm_Chr5g0020121
rosa_laevigata	RLG00000032502
rosa_multiflora	Rmu_sc0000116.1_g000006
rosa_roxburghii	Rroxscaffold_1G00058080
rosa_rugosa	Rorug05G0057400 Rorug05G0057400
rosa_samantha	Rh5AG147300 Rh5BG146900 Rh5CG158300 Rh5DG146200
rosa_wichuraiana	Rw5G013020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2165
Acc36I	ACCTGC	1 cut(s)	1216
AccB1I	GGYRCC	3 cut(s)	26, 167, 478
AccB7I	CCANNNNNTGG	1 cut(s)	3298
AccBSI	CCGCTC	1 cut(s)	126
AccI	GTMKAC	4 cut(s)	302, 2125, 2926, 3224
AclWI	GGATC	6 cut(s)	240, 1255, 1268, 1996, 2979, 3176
AcoI	YGGCCR	1 cut(s)	415
AcsI	RAATTY	8 cut(s)	17, 754, 2024, 2220, 2555, 2795, 3156, 3272
AcuI	CTGAAG	5 cut(s)	510, 1440, 1674, 2130, 2451
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	3 cut(s)	421, 735, 3169
AflIII	ACRYGT	1 cut(s)	1735
AjnI	CCWGG	9 cut(s)	481, 1108, 1395, 1729, 1756, 2620, 2959, 3184, 3233
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
Alw21I	GWGCWC	3 cut(s)	39, 259, 2144
Alw26I	GTCTC	6 cut(s)	52, 505, 705, 909, 2950, 3235
AlwI	GGATC	6 cut(s)	240, 1255, 1268, 1996, 2979, 3176
AlwNI	CAGNNNCTG	3 cut(s)	488, 2765, 2866
Ama87I	CYCGRG	1 cut(s)	2412
AoxI	GGCC	6 cut(s)	415, 1816, 1869, 2083, 2476, 2615
ApoI	RAATTY	8 cut(s)	17, 754, 2024, 2220, 2555, 2795, 3156, 3272
Asp700I	GAANNNNTTC	1 cut(s)	1245
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	7 cut(s)	150, 162, 1751, 2084, 2476, 2615, 2693
AsuHPI	GGTGA	8 cut(s)	25, 298, 382, 599, 659, 993, 1568, 3068
AsuII	TTCGAA	2 cut(s)	263, 3035
AvaI	CYCGRG	1 cut(s)	2412
AvaII	GGWCC	4 cut(s)	150, 162, 1751, 2693
BamHI	GGATCC	1 cut(s)	1260
BanI	GGYRCC	3 cut(s)	26, 167, 478
BanII	GRGCYC	2 cut(s)	259, 2144
BarI	GAAGNNNNNNTAC	2 cut(s)	1230, 1262
BbsI	GAAGAC	1 cut(s)	1238
Bbv12I	GWGCWC	3 cut(s)	39, 259, 2144
BbvCI	CCTCAGC	1 cut(s)	348
BceAI	ACGGC	4 cut(s)	283, 402, 2338, 2463
BcgI	CGANNNNNNTGC	6 cut(s)	857, 891, 1061, 1095, 2720, 2754
BciT130I	CCWGG	9 cut(s)	483, 1110, 1397, 1731, 1758, 2622, 2961, 3186, 3235
BcoDI	GTCTC	6 cut(s)	52, 505, 705, 909, 2950, 3235
BfaI	CTAG	5 cut(s)	240, 804, 1823, 1896, 3359
BfoI	RGCGCY	1 cut(s)	171
BfuAI	ACCTGC	1 cut(s)	1216
BglII	AGATCT	2 cut(s)	2067, 3311
BlpI	GCTNAGC	2 cut(s)	201, 3135
Bme1390I	CCNGG	9 cut(s)	483, 1110, 1397, 1731, 1758, 2622, 2961, 3186, 3235
Bme18I	GGWCC	4 cut(s)	150, 162, 1751, 2693
BmeT110I	CYCGRG	1 cut(s)	2412
BmgT120I	GGNCC	7 cut(s)	150, 162, 1751, 2084, 2476, 2615, 2693
BmiI	GGNNCC	7 cut(s)	28, 169, 480, 1262, 1361, 2086, 2477
BmrFI	CCNGG	9 cut(s)	483, 1110, 1397, 1731, 1758, 2622, 2961, 3186, 3235
BmrI	ACTGGG	1 cut(s)	895
BmsI	GCATC	9 cut(s)	577, 895, 947, 1267, 2281, 2932, 3121, 3199, 3325
BmuI	ACTGGG	1 cut(s)	895
BoxI	GACNNNNGTC	1 cut(s)	837
BpiI	GAAGAC	1 cut(s)	1238
BplI	GAGNNNNNCTC	4 cut(s)	320, 352, 630, 662
BpmI	CTGGAG	1 cut(s)	2856
Bpu10I	CCTNAGC	2 cut(s)	348, 2697
Bpu1102I	GCTNAGC	2 cut(s)	201, 3135
Bpu14I	TTCGAA	2 cut(s)	263, 3035
BpuEI	CTTGAG	4 cut(s)	725, 1099, 1648, 1823
BsaBI	GATNNNNATC	1 cut(s)	2680
BsaHI	GRCGYC	1 cut(s)	168
BsaI	GGTCTC	2 cut(s)	2950, 3235
BsaJI	CCNNGG	5 cut(s)	482, 1458, 1729, 1860, 3185
BsaWI	WCCGGW	1 cut(s)	2434
BsaXI	ACNNNNNCTCC	6 cut(s)	71, 101, 110, 140, 1290, 1320
Bse1I	ACTGG	8 cut(s)	480, 901, 1363, 1427, 2839, 2902, 3197, 3292
Bse3DI	GCAATG	3 cut(s)	2246, 2424, 2527
Bse8I	GATNNNNATC	1 cut(s)	2680
BseBI	CCWGG	9 cut(s)	483, 1110, 1397, 1731, 1758, 2622, 2961, 3186, 3235
BseDI	CCNNGG	5 cut(s)	482, 1458, 1729, 1860, 3185
BseJI	GATNNNNATC	1 cut(s)	2680
BseMI	GCAATG	3 cut(s)	2246, 2424, 2527
BseNI	ACTGG	8 cut(s)	480, 901, 1363, 1427, 2839, 2902, 3197, 3292
BseRI	GAGGAG	5 cut(s)	73, 76, 118, 121, 166
BsgI	GTGCAG	3 cut(s)	2220, 2754, 2931
Bsh1285I	CGRYCG	1 cut(s)	145
BshFI	GGCC	6 cut(s)	417, 1818, 1871, 2085, 2478, 2617
BshNI	GGYRCC	3 cut(s)	26, 167, 478
BsiEI	CGRYCG	1 cut(s)	145
BsiHKAI	GWGCWC	3 cut(s)	39, 259, 2144
BsiHKCI	CYCGRG	1 cut(s)	2412
BsiSI	CCGG	3 cut(s)	165, 230, 2435
BsiWI	CGTACG	1 cut(s)	733
BslFI	GGGAC	2 cut(s)	499, 2835
BsmAI	GTCTC	6 cut(s)	52, 505, 705, 909, 2950, 3235
BsmBI	CGTCTC	2 cut(s)	52, 505
BsmFI	GGGAC	2 cut(s)	499, 2835
BsmI	GAATGC	2 cut(s)	549, 934
BsnI	GGCC	6 cut(s)	417, 1818, 1871, 2085, 2478, 2617
Bso31I	GGTCTC	2 cut(s)	2950, 3235
BsoBI	CYCGRG	1 cut(s)	2412
Bsp119I	TTCGAA	2 cut(s)	263, 3035
Bsp1286I	GDGCHC	3 cut(s)	39, 259, 2144
Bsp1720I	GCTNAGC	2 cut(s)	201, 3135
Bsp19I	CCATGG	1 cut(s)	1860
BspANI	GGCC	6 cut(s)	417, 1818, 1871, 2085, 2478, 2617
BspHI	TCATGA	1 cut(s)	382
BspLI	GGNNCC	7 cut(s)	28, 169, 480, 1262, 1361, 2086, 2477
BspMI	ACCTGC	1 cut(s)	1216
BspPI	GGATC	6 cut(s)	240, 1255, 1268, 1996, 2979, 3176
BspQI	GCTCTTC	1 cut(s)	2149
BspT104I	TTCGAA	2 cut(s)	263, 3035
BspT107I	GGYRCC	3 cut(s)	26, 167, 478
BspTNI	GGTCTC	2 cut(s)	2950, 3235
BsrBI	CCGCTC	1 cut(s)	126
BsrDI	GCAATG	3 cut(s)	2246, 2424, 2527
BsrI	ACTGG	8 cut(s)	480, 901, 1363, 1427, 2839, 2902, 3197, 3292
BssECI	CCNNGG	5 cut(s)	482, 1458, 1729, 1860, 3185
BssNAI	GTATAC	1 cut(s)	2126
BssNI	GRCGYC	1 cut(s)	168
BssT1I	CCWWGG	2 cut(s)	1458, 1860
Bst1107I	GTATAC	1 cut(s)	2126
Bst2UI	CCWGG	9 cut(s)	483, 1110, 1397, 1731, 1758, 2622, 2961, 3186, 3235
Bst4CI	ACNGT	8 cut(s)	154, 699, 1272, 1879, 2133, 2326, 3028, 3327
Bst6I	CTCTTC	4 cut(s)	184, 912, 1978, 2149
BstACI	GRCGYC	1 cut(s)	168
BstAPI	GCANNNNNTGC	1 cut(s)	2765
BstBI	TTCGAA	2 cut(s)	263, 3035
BstC8I	GCNNGC	6 cut(s)	255, 345, 2178, 2237, 2733, 3141
BstDSI	CCRYGG	1 cut(s)	1860
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstMAI	GTCTC	6 cut(s)	52, 505, 705, 909, 2950, 3235
BstMCI	CGRYCG	1 cut(s)	145
BstMWI	GCNNNNNNNGC	9 cut(s)	353, 2099, 2186, 2236, 2660, 2765, 2768, 3140, 3359
BstNI	CCWGG	9 cut(s)	483, 1110, 1397, 1731, 1758, 2622, 2961, 3186, 3235
BstNSI	RCATGY	3 cut(s)	985, 1099, 1739
BstPAI	GACNNNNGTC	1 cut(s)	837
BstSCI	CCNGG	9 cut(s)	481, 1108, 1395, 1729, 1756, 2620, 2959, 3184, 3233
BstV2I	GAAGAC	1 cut(s)	1238
BstX2I	RGATCY	4 cut(s)	1260, 1988, 2067, 3311
BstYI	RGATCY	4 cut(s)	1260, 1988, 2067, 3311
BstZ17I	GTATAC	1 cut(s)	2126
BsuRI	GGCC	6 cut(s)	417, 1818, 1871, 2085, 2478, 2617
BtgI	CCRYGG	1 cut(s)	1860
BtsI	GCAGTG	2 cut(s)	37, 3153
BtsIMutI	CAGTG	2 cut(s)	37, 3153
BveI	ACCTGC	1 cut(s)	1216
Cac8I	GCNNGC	6 cut(s)	255, 345, 2178, 2237, 2733, 3141
CaiI	CAGNNNCTG	3 cut(s)	488, 2765, 2866
CciI	TCATGA	1 cut(s)	382
CfoI	GCGC	1 cut(s)	170
Cfr13I	GGNCC	7 cut(s)	150, 162, 1751, 2084, 2476, 2615, 2693
CseI	GACGC	1 cut(s)	522
CsiI	ACCWGGT	1 cut(s)	2959
Csp6I	GTAC	3 cut(s)	420, 734, 3168
CspCI	CAANNNNNGTGG	4 cut(s)	2118, 2153, 2377, 2412
CviQI	GTAC	3 cut(s)	420, 734, 3168
DinI	GGCGCC	1 cut(s)	169
DraI	TTTAAA	2 cut(s)	951, 1662
DrdI	GACNNNNNNGTC	1 cut(s)	2165
DseDI	GACNNNNNNGTC	1 cut(s)	2165
EaeI	YGGCCR	1 cut(s)	415
Eam1104I	CTCTTC	4 cut(s)	184, 912, 1978, 2149
EarI	CTCTTC	4 cut(s)	184, 912, 1978, 2149
EciI	GGCGGA	1 cut(s)	1491
Ecl136II	GAGCTC	2 cut(s)	257, 2142
Eco130I	CCWWGG	2 cut(s)	1458, 1860
Eco147I	AGGCCT	2 cut(s)	1818, 1871
Eco24I	GRGCYC	2 cut(s)	259, 2144
Eco31I	GGTCTC	2 cut(s)	2950, 3235
Eco32I	GATATC	1 cut(s)	1020
Eco47I	GGWCC	4 cut(s)	150, 162, 1751, 2693
Eco53kI	GAGCTC	2 cut(s)	257, 2142
Eco57I	CTGAAG	5 cut(s)	510, 1440, 1674, 2130, 2451
Eco88I	CYCGRG	1 cut(s)	2412
EcoICRI	GAGCTC	2 cut(s)	257, 2142
EcoO109I	RGGNCCY	1 cut(s)	2693
EcoRII	CCWGG	9 cut(s)	481, 1108, 1395, 1729, 1756, 2620, 2959, 3184, 3233
EcoRV	GATATC	1 cut(s)	1020
EcoT14I	CCWWGG	2 cut(s)	1458, 1860
EcoT22I	ATGCAT	2 cut(s)	2296, 2424
EcoT38I	GRGCYC	2 cut(s)	259, 2144
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
ErhI	CCWWGG	2 cut(s)	1458, 1860
Esp3I	CGTCTC	2 cut(s)	52, 505
FaqI	GGGAC	2 cut(s)	499, 2835
FauI	CCCGC	1 cut(s)	193
FauNDI	CATATG	2 cut(s)	1551, 2296
FblI	GTMKAC	4 cut(s)	302, 2125, 2926, 3224
FriOI	GRGCYC	2 cut(s)	259, 2144
FspBI	CTAG	5 cut(s)	240, 804, 1823, 1896, 3359
GlaI	GCGC	1 cut(s)	169
GsuI	CTGGAG	1 cut(s)	2856
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	6 cut(s)	417, 1818, 1871, 2085, 2478, 2617
HapII	CCGG	3 cut(s)	165, 230, 2435
HgaI	GACGC	1 cut(s)	522
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	1 cut(s)	168
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HincII	GTYRAC	3 cut(s)	526, 1146, 2512
HindII	GTYRAC	3 cut(s)	526, 1146, 2512
HindIII	AAGCTT	1 cut(s)	1254
HpaII	CCGG	3 cut(s)	165, 230, 2435
HphI	GGTGA	8 cut(s)	25, 298, 382, 599, 659, 993, 1568, 3068
Hpy99I	CGWCG	3 cut(s)	26, 143, 158
HpyCH4III	ACNGT	8 cut(s)	154, 699, 1272, 1879, 2133, 2326, 3028, 3327
HpyCH4IV	ACGT	3 cut(s)	45, 2197, 2496
HpyF10VI	GCNNNNNNNGC	9 cut(s)	353, 2099, 2186, 2236, 2660, 2765, 2768, 3140, 3359
HpySE526I	ACGT	3 cut(s)	45, 2197, 2496
Hsp92I	GRCGYC	1 cut(s)	168
HspAI	GCGC	1 cut(s)	168
KasI	GGCGCC	1 cut(s)	167
LguI	GCTCTTC	1 cut(s)	2149
LmnI	GCTCC	5 cut(s)	131, 328, 508, 2185, 2584
LweI	GCATC	9 cut(s)	577, 895, 947, 1267, 2281, 2932, 3121, 3199, 3325
MabI	ACCWGGT	1 cut(s)	2959
MaeI	CTAG	5 cut(s)	240, 804, 1823, 1896, 3359
MaeII	ACGT	3 cut(s)	45, 2197, 2496
MaeIII	GTNAC	3 cut(s)	286, 2447, 2839
MbiI	CCGCTC	1 cut(s)	126
MflI	RGATCY	4 cut(s)	1260, 1988, 2067, 3311
MhlI	GDGCHC	3 cut(s)	39, 259, 2144
Mly113I	GGCGCC	1 cut(s)	168
MlyI	GAGTC	2 cut(s)	863, 1529
MmeI	TCCRAC	3 cut(s)	812, 891, 2994
Mph1103I	ATGCAT	2 cut(s)	2296, 2424
MroXI	GAANNNNTTC	1 cut(s)	1245
MseI	TTAA	7 cut(s)	333, 950, 1251, 1308, 1661, 2529, 2585
MslI	CAYNNNNRTG	1 cut(s)	1554
MspA1I	CMGCKG	2 cut(s)	147, 2762
MspI	CCGG	3 cut(s)	165, 230, 2435
MspR9I	CCNGG	9 cut(s)	483, 1110, 1397, 1731, 1758, 2622, 2961, 3186, 3235
Mva1269I	GAATGC	2 cut(s)	549, 934
MvaI	CCWGG	9 cut(s)	483, 1110, 1397, 1731, 1758, 2622, 2961, 3186, 3235
MwoI	GCNNNNNNNGC	9 cut(s)	353, 2099, 2186, 2236, 2660, 2765, 2768, 3140, 3359
NarI	GGCGCC	1 cut(s)	168
NcoI	CCATGG	1 cut(s)	1860
NdeI	CATATG	2 cut(s)	1551, 2296
NlaIV	GGNNCC	7 cut(s)	28, 169, 480, 1262, 1361, 2086, 2477
NmuCI	GTSAC	2 cut(s)	286, 2447
NsiI	ATGCAT	2 cut(s)	2296, 2424
NspI	RCATGY	3 cut(s)	985, 1099, 1739
NspV	TTCGAA	2 cut(s)	263, 3035
PagI	TCATGA	1 cut(s)	382
PceI	AGGCCT	2 cut(s)	1818, 1871
PciI	ACATGT	1 cut(s)	1735
PciSI	GCTCTTC	1 cut(s)	2149
PcsI	WCGNNNNNNNCGW	2 cut(s)	269, 296
PctI	GAATGC	2 cut(s)	549, 934
PdmI	GAANNNNTTC	1 cut(s)	1245
PfeI	GAWTC	8 cut(s)	364, 729, 800, 1379, 1414, 1463, 2801, 3302
Pfl23II	CGTACG	1 cut(s)	733
PflMI	CCANNNNNTGG	1 cut(s)	3298
PfoI	TCCNGGA	1 cut(s)	3233
PleI	GAGTC	2 cut(s)	863, 1529
PluTI	GGCGCC	1 cut(s)	171
PpsI	GAGTC	2 cut(s)	863, 1529
PpuMI	RGGWCCY	1 cut(s)	2693
PscI	ACATGT	1 cut(s)	1735
PshAI	GACNNNNGTC	1 cut(s)	837
Psp124BI	GAGCTC	2 cut(s)	259, 2144
Psp5II	RGGWCCY	1 cut(s)	2693
Psp6I	CCWGG	9 cut(s)	481, 1108, 1395, 1729, 1756, 2620, 2959, 3184, 3233
PspGI	CCWGG	9 cut(s)	481, 1108, 1395, 1729, 1756, 2620, 2959, 3184, 3233
PspLI	CGTACG	1 cut(s)	733
PspN4I	GGNNCC	7 cut(s)	28, 169, 480, 1262, 1361, 2086, 2477
PspPI	GGNCC	7 cut(s)	150, 162, 1751, 2084, 2476, 2615, 2693
PspPPI	RGGWCCY	1 cut(s)	2693
PstNI	CAGNNNCTG	3 cut(s)	488, 2765, 2866
PsuI	RGATCY	4 cut(s)	1260, 1988, 2067, 3311
PvuII	CAGCTG	1 cut(s)	2762
RsaI	GTAC	3 cut(s)	421, 735, 3169
RsaNI	GTAC	3 cut(s)	420, 734, 3168
RseI	CAYNNNNRTG	1 cut(s)	1554
SacI	GAGCTC	2 cut(s)	259, 2144
SapI	GCTCTTC	1 cut(s)	2149
SaqAI	TTAA	7 cut(s)	333, 950, 1251, 1308, 1661, 2529, 2585
Sau96I	GGNCC	7 cut(s)	150, 162, 1751, 2084, 2476, 2615, 2693
SchI	GAGTC	2 cut(s)	863, 1529
ScrFI	CCNGG	9 cut(s)	483, 1110, 1397, 1731, 1758, 2622, 2961, 3186, 3235
SduI	GDGCHC	3 cut(s)	39, 259, 2144
SexAI	ACCWGGT	1 cut(s)	2959
SfaNI	GCATC	9 cut(s)	577, 895, 947, 1267, 2281, 2932, 3121, 3199, 3325
SfoI	GGCGCC	1 cut(s)	169
SfuI	TTCGAA	2 cut(s)	263, 3035
SinI	GGWCC	4 cut(s)	150, 162, 1751, 2693
SmiMI	CAYNNNNRTG	1 cut(s)	1554
SmlI	CTYRAG	4 cut(s)	704, 1114, 1627, 1802
SmoI	CTYRAG	4 cut(s)	704, 1114, 1627, 1802
SseBI	AGGCCT	2 cut(s)	1818, 1871
SspDI	GGCGCC	1 cut(s)	167
SspI	AATATT	1 cut(s)	559
SspMI	CTAG	5 cut(s)	240, 804, 1823, 1896, 3359
SstI	GAGCTC	2 cut(s)	259, 2144
StuI	AGGCCT	2 cut(s)	1818, 1871
StyD4I	CCNGG	9 cut(s)	481, 1108, 1395, 1729, 1756, 2620, 2959, 3184, 3233
StyI	CCWWGG	2 cut(s)	1458, 1860
TaaI	ACNGT	8 cut(s)	154, 699, 1272, 1879, 2133, 2326, 3028, 3327
TaiI	ACGT	3 cut(s)	48, 2200, 2499
TaqI	TCGA	6 cut(s)	9, 117, 192, 263, 530, 3035
TauI	GCSGC	2 cut(s)	2336, 3323
TfiI	GAWTC	8 cut(s)	364, 729, 800, 1379, 1414, 1463, 2801, 3302
Tru1I	TTAA	7 cut(s)	333, 950, 1251, 1308, 1661, 2529, 2585
Tru9I	TTAA	7 cut(s)	333, 950, 1251, 1308, 1661, 2529, 2585
TscAI	CASTG	2 cut(s)	44, 3153
TseFI	GTSAC	2 cut(s)	286, 2447
Tsp45I	GTSAC	2 cut(s)	286, 2447
TspGWI	ACGGA	1 cut(s)	566
TspRI	CASTG	2 cut(s)	44, 3153
Van91I	CCANNNNNTGG	1 cut(s)	3298
VpaK11BI	GGWCC	4 cut(s)	150, 162, 1751, 2693
XapI	RAATTY	8 cut(s)	17, 754, 2024, 2220, 2555, 2795, 3156, 3272
XceI	RCATGY	3 cut(s)	985, 1099, 1739
XcmI	CCANNNNNNNNNTGG	1 cut(s)	463
XmiI	GTMKAC	4 cut(s)	302, 2125, 2926, 3224
XmnI	GAANNNNTTC	1 cut(s)	1245
XspI	CTAG	5 cut(s)	240, 804, 1823, 1896, 3359
Zsp2I	ATGCAT	2 cut(s)	2296, 2424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.