Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0011121

Physical Location & Seq

Genomic Coordinates Reverse (-)

79978106 .. 79985953

Gene Structure 7848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00058080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3354 bp

ATGGAGTTCGAGGTGAAATTAGTCGGTGCCATAGAGGACTGCTACGTCTCCCTCCCTCTCCCCCTAATCCAAACCCTCCACTCCTCCTCCCCATCCCTCCCTCCCGTCCTCGCCCTCGACCTCCGCTCCTCCTCAAACGACGACCGTTGGACCGTCGCTTGGTCCGGCGCCACCTCCTCTTCTCTCGCAATCGAGGTAGCTCAGCAATTCGGAGAGTGTATTTCGCTGCCGAATCGTGCTAGGGTTCAGGTGCGAGCTCTTTCGAATGTGGCGAAAGCTACTTTGGTGACGATTGAGCCGTCTACTGAGGATGATTGGGAGGTCTTGGAGCTTAACTCCGAGCTTGCTGAGGCTGCTATATTGAATCAGGTGAGGATTGTTCATGAAGGAATGAAGTTTCCTTTGTGGTTGCATGGCCGCACCACCATTACATTTCTTGTTGTTTCAACCTTTCCCAAGAAATCGGTGGTGCAACTGGTGCCAGGGACTGAAGTAGCAGTTGCTCCAAAGAGACGCAAGAATGTCAACTCGAATGGGGATGGAATGCGCTCGTCTAATATTTCAAAAGCACTACTCCGTGTTCAAGATGCAGACAGGAGATTAGTTCACCAAAGTAATGTGAAAGGTGTTGAGCTTGGAGTTGTTCTCACTTCTGTTGCTATTATTCACCCAGAAACAGCAAAAATGTTCTCATTACAGTCTCTTGAGTTAGTAGCTGTTGTGCCGAGATTAGTACCAAAAGAAAGCATGAAAAATTCTGAAAGTGATGGGTTGAGAATAAGAAGTTCAACAACAAAGGAATCTAGTGTTAGAGTTCCAAATGACAAAAAGGACAATCGTCAAGCAGTAGTTCGGCTGTTGATTTCCGACTCAGTTGCTAAAGGGCATCTAATGATTGCCCAGTCTCTTCGCCTCTACCTTAGGGCTGGTTTGCATTCATGGGTTTATTTAAAGGGATGCGGTGCTATTTTGAAGAATAACATGCCATTGTGTTCACTTTCACCCTGCCACTTCAAGATATCTCCTAAAGAGAAAGCTGTTGAAAGAAATGGTTTACAAGTTCTTGACAGGCATATAACTCGTAAGAAGAATGACATGCTTCTAACAGCTGGCTCAAGCACCTATATAGATGTTGTTGATTGGTCAACCCATGACAAAGTTGTTGCTGATTTTTCTTGCAAAGAGGATGAAGAACCTGCCCTTCAGTCTGACAAGGGAAATGGAGTAGAAAGTCTACTTAAAGCTTGGATCCTTGCACAGTTAGATGCTATTACTTCCAAAGCAGGAGTAGAAGTTAATTCATTGATTTTGGGAAATGAAACTTTGCTTCATTTTGAAGTGAAAGGGAACCAGTCTGGGATTGAGGAATCATCAAATGATTTCCTGGCAAACAATAATATGAATCCTGAAGTTCCAGTTGAAGTCTTGTATGTATTGACAATTTCCAAGGAATCTCAATGTGGCGGAAATGTGTATGAGCTTGTATTTGATGAAAGAAACAAAGGCAACAACAATAATCTTGACTCACTTGAAAAGCATATGGGTGAACCTGTGTCCTTTTATTCAGTAAGAGAAAGAATGTCTGACAAAGATATTACTTCTGATATATCTTCCTTGAGCTGGATGGGGACAACTGCTTCTGAAGTTTTAAATAGAATGTTGGTGTTGCTAACTCCTGCTTATGGGGTATGGTTTAGTTCACATAATCTTCCTCTCCCTGGACATGTTCTGATACATGGACCTCCGGGTTCTGGAAAGACATTATTAGCGAGAACTGTTGGAAAATGTCTTGAGGAACATGGTGGCCTTCTAGCACACATAGTTTATGTATGCTGTTCTCAACTTGCCATGGAAAAGGCCTTGACCGTTCGCCAAGCACTCTCTAGCTACATATCTGAGGCTTTAGATCATGCACCATCTCTTGTAATTCTTGACGATCTTGATAGCATTGTTTCATCCTCTTCAGACTTAGAAGGATCTCAACCTTCAACTTCTGTTGTTGCACTAGCAGAATTTCTCATAGACATTATGGATGAATATGGGGAAAAAAGGAAGATTTCCTGTGGAATTGGCCCCCTTGCTTTCATAGCTTCCTCAAAGTCATTAGAGAGTATACCACAGTCATTGAGCTCTTCAGGTAGGTTTGACTTTCATGTCCAAATGCCTGCTCCTGCTGCCTCAGAACGTGCAGCCATTTTGAAACATGAAATTCGGAGGCGTTGTTTGCAATGTTCTGATGAAATCTTACAAGATGTAGCTTCCAAATGTGATGGCTATGATGCATATGATCTGGAAATCTTGGTTGATAGAGCTGTCCATGCCGCCATAGGTCGTTTTCTGCCTTATCAGTTTGCTTCTGATGAGCGTGAAAAACCCACTTTACTTGCGGATGATTTCTCTCGGGCAATGCATGAGTTCCTTCCGGTTGCCATGCGTGACATCACTAAGTCTGCTTCTGAAGGGGGTCGTTCTGGGTGGGATGACGTTGGTGGTCTTGTTGACATTCGCAATGCAATTAAAGAGGCAAGATATTTATCAACTGAGTTAATATTTATATATATTACGCCTCCTTTAAGGTTGCGGTCAAATGTATTATTGTACGGGCCACCTGGCTGTGGAAAAACGCATTTAGTTGGTTCTGCTGCTGCTGCCTGTTCACTACGATTTATATCAGTCAAAGGACCTGAGCTGTTGAATAAATACATTGGTGCTTCTGAGCAAGCTGTTCGGGATATATTCTCCAAAGCAGCTGCTGCAGCACCATGCCTTCTCTTTTTTGACGAATTTGATTCTATTGCCCCAAAAAGGGGACATGACAATACTGGAGTAACTGATCGTGTTGTCAATCAGTTTCTGACTGAATTGGATGGTGTTGAAGTTTTGACCGGTGTTTTTGTGTTTGCTGCAACAAGTAGACCAGATTTGCTTGATGCTGCACTTCTGAGACCTGGTAGGCTGGATCGCCTTCTGTTTTGTGATTTTCCATCTCCACGTGAAAGGTTGGATATTCTAACAGTCCTTTCGAAAAAGCTACCACTGGATGGTGATGTGGATTTATCTGCCATAGCTGATATGACTGAGGGATATAGTGGGGCTGACCTTCAAGCACTTCTCTCAGATGCTCAGCTTGCAGCAGTGCATGAAATTCTGGATGGTACATATACCAATGATCCAGGGAGAAAGCCAGTTATTTCTGATGCTCTCTTGAAGTCTACTGCTTCCAGGATGAGACCATCTGTTTCTGAGGCTGAGAAGCAAAAATTTTACGACATTTACAGCCAGTTCTTGGATTCAAAAAGATCTGTTGCCGCACAGTCAAGAGATGCAAAAGGCAAGAGAGCAACCCTAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042886 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

AAA PEX-1N

Protein Analysis

1117

Amino Acids

122.06

Weight (kDa)

5.76

Isoelectric Point (pI)

48.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEX-1N	PF09262	96 - 169	8.3e-27	Peroxisome biogenesis factor 1, N-terminal
AAA_16	PF13191	571 - 673	1.3e-06	AAA ATPase domain
NPHP3_N	PF24883	574 - 673	2.2e-06	Nephrocystin 3, N-terminal
AAA	PF00004	576 - 722	6e-16	ATPase family associated with various cellular activities (AAA)
AAA	PF00004	864 - 992	1.6e-38	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	1016 - 1056	6.4e-13	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08470 AT5G08470 AT5G08470 AT5G08470
fragaria_vesca	FvH4_3g12310
malus_domestica	MD05G1251500.v1.1 MD15G1400900.v1.1
prunus_persica	Prupe.4G112300_v2.0.a1
pyrus_communis	pycom05g22920
rosa_chinensis	RchiOBHm_Chr5g0020121
rosa_laevigata	RLG00000032502
rosa_multiflora	Rmu_sc0000116.1_g000006
rosa_roxburghii	Rroxscaffold_1G00058080
rosa_rugosa	Rorug05G0057400 Rorug05G0057400
rosa_samantha	Rh5AG147300 Rh5BG146900 Rh5CG158300 Rh5DG146200
rosa_wichuraiana	Rw5G013020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	44, 2153
Acc36I	ACCTGC	1 cut(s)	1204
AccB1I	GGYRCC	3 cut(s)	26, 167, 478
AccB7I	CCANNNNNTGG	2 cut(s)	3041, 3286
AccBSI	CCGCTC	1 cut(s)	126
AccI	GTMKAC	5 cut(s)	302, 1234, 2113, 2914, 3212
AciI	CCGC	8 cut(s)	124, 418, 960, 1464, 2322, 2387, 2581, 3309
AclWI	GGATC	5 cut(s)	1243, 1256, 1984, 2967, 3164
AcoI	YGGCCR	1 cut(s)	415
AcsI	RAATTY	6 cut(s)	754, 2012, 2208, 2783, 3144, 3260
AcuI	CTGAAG	7 cut(s)	510, 1187, 1428, 1662, 1947, 2118, 2478
AcvI	CACGTG	1 cut(s)	2993
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	3 cut(s)	735, 2600, 3157
AflIII	ACRYGT	1 cut(s)	1723
AgeI	ACCGGT	1 cut(s)	2885
AjnI	CCWGG	7 cut(s)	481, 1383, 1717, 2608, 2947, 3172, 3221
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
Alw21I	GWGCWC	2 cut(s)	259, 2132
Alw26I	GTCTC	6 cut(s)	52, 505, 705, 909, 2938, 3223
AlwI	GGATC	5 cut(s)	1243, 1256, 1984, 2967, 3164
AlwNI	CAGNNNCTG	3 cut(s)	488, 2753, 2854
Ama87I	CYCGRG	1 cut(s)	2400
AoxI	GGCC	5 cut(s)	415, 1804, 1857, 2071, 2603
ApoI	RAATTY	6 cut(s)	754, 2012, 2208, 2783, 3144, 3260
AsiGI	ACCGGT	1 cut(s)	2885
AspLEI	GCGC	2 cut(s)	170, 549
AspS9I	GGNCC	6 cut(s)	150, 162, 1739, 2072, 2603, 2681
AsuC2I	CCSGG	1 cut(s)	1746
AsuHPI	GGTGA	8 cut(s)	25, 298, 382, 599, 659, 993, 1556, 3056
AsuII	TTCGAA	2 cut(s)	263, 3023
AvaI	CYCGRG	1 cut(s)	2400
AvaII	GGWCC	4 cut(s)	150, 162, 1739, 2681
AxyI	CCTNAGG	1 cut(s)	920
BamHI	GGATCC	1 cut(s)	1248
BanI	GGYRCC	3 cut(s)	26, 167, 478
BanII	GRGCYC	2 cut(s)	259, 2132
BbrPI	CACGTG	1 cut(s)	2993
Bbv12I	GWGCWC	2 cut(s)	259, 2132
BbvCI	CCTCAGC	1 cut(s)	348
BceAI	ACGGC	1 cut(s)	283
BcgI	CGANNNNNNTGC	6 cut(s)	857, 891, 1061, 1095, 2708, 2742
BciT130I	CCWGG	7 cut(s)	483, 1385, 1719, 2610, 2949, 3174, 3223
BcnI	CCSGG	1 cut(s)	1746
BcoDI	GTCTC	6 cut(s)	52, 505, 705, 909, 2938, 3223
BfaI	CTAG	6 cut(s)	240, 804, 1811, 1884, 2006, 3347
BfmI	CTRYAG	1 cut(s)	2754
BfoI	RGCGCY	1 cut(s)	171
BfuAI	ACCTGC	1 cut(s)	1204
BglII	AGATCT	1 cut(s)	3299
BlpI	GCTNAGC	2 cut(s)	201, 3123
Bme1390I	CCNGG	8 cut(s)	483, 1385, 1719, 1746, 2610, 2949, 3174, 3223
Bme18I	GGWCC	4 cut(s)	150, 162, 1739, 2681
BmeT110I	CYCGRG	1 cut(s)	2400
BmgT120I	GGNCC	6 cut(s)	150, 162, 1739, 2072, 2603, 2681
BmiI	GGNNCC	6 cut(s)	28, 169, 480, 1250, 1349, 2074
BmrFI	CCNGG	8 cut(s)	483, 1385, 1719, 1746, 2610, 2949, 3174, 3223
BmrI	ACTGGG	1 cut(s)	895
BmsI	GCATC	9 cut(s)	577, 895, 947, 1255, 2269, 2920, 3109, 3187, 3313
BmuI	ACTGGG	1 cut(s)	895
BoxI	GACNNNNGTC	1 cut(s)	837
BplI	GAGNNNNNCTC	4 cut(s)	320, 352, 630, 662
BpmI	CTGGAG	1 cut(s)	2844
Bpu10I	CCTNAGC	2 cut(s)	348, 2685
Bpu1102I	GCTNAGC	2 cut(s)	201, 3123
Bpu14I	TTCGAA	2 cut(s)	263, 3023
BpuEI	CTTGAG	4 cut(s)	725, 1099, 1636, 1811
BpuMI	CCSGG	1 cut(s)	1746
BsaAI	YACGTR	1 cut(s)	2993
BsaBI	GATNNNNATC	2 cut(s)	2533, 2668
BsaHI	GRCGYC	1 cut(s)	168
BsaI	GGTCTC	2 cut(s)	2938, 3223
BsaJI	CCNNGG	5 cut(s)	482, 1446, 1717, 1848, 3173
BsaWI	WCCGGW	2 cut(s)	2422, 2885
BsaXI	ACNNNNNCTCC	8 cut(s)	71, 101, 110, 140, 1278, 1308, 2206, 2236
Bse118I	RCCGGY	1 cut(s)	2885
Bse1I	ACTGG	8 cut(s)	480, 901, 1351, 1415, 2827, 3042, 3185, 3280
Bse21I	CCTNAGG	1 cut(s)	920
Bse3DI	GCAATG	3 cut(s)	2234, 2412, 2515
Bse8I	GATNNNNATC	2 cut(s)	2533, 2668
BseBI	CCWGG	7 cut(s)	483, 1385, 1719, 2610, 2949, 3174, 3223
BseDI	CCNNGG	5 cut(s)	482, 1446, 1717, 1848, 3173
BseJI	GATNNNNATC	2 cut(s)	2533, 2668
BseMI	GCAATG	3 cut(s)	2234, 2412, 2515
BseNI	ACTGG	8 cut(s)	480, 901, 1351, 1415, 2827, 3042, 3185, 3280
BseRI	GAGGAG	5 cut(s)	73, 76, 118, 121, 166
BsgI	GTGCAG	2 cut(s)	2208, 2919
Bsh1285I	CGRYCG	1 cut(s)	145
BshFI	GGCC	5 cut(s)	417, 1806, 1859, 2073, 2605
BshNI	GGYRCC	3 cut(s)	26, 167, 478
BshTI	ACCGGT	1 cut(s)	2885
BsiEI	CGRYCG	1 cut(s)	145
BsiHKAI	GWGCWC	2 cut(s)	259, 2132
BsiHKCI	CYCGRG	1 cut(s)	2400
BsiSI	CCGG	4 cut(s)	165, 1745, 2423, 2886
BslFI	GGGAC	3 cut(s)	499, 1642, 2823
BsmAI	GTCTC	6 cut(s)	52, 505, 705, 909, 2938, 3223
BsmBI	CGTCTC	2 cut(s)	52, 505
BsmFI	GGGAC	3 cut(s)	499, 1642, 2823
BsmI	GAATGC	2 cut(s)	549, 934
BsnI	GGCC	5 cut(s)	417, 1806, 1859, 2073, 2605
Bso31I	GGTCTC	2 cut(s)	2938, 3223
BsoBI	CYCGRG	1 cut(s)	2400
Bsp119I	TTCGAA	2 cut(s)	263, 3023
Bsp1286I	GDGCHC	2 cut(s)	259, 2132
Bsp143I	GATC	9 cut(s)	1248, 1906, 1936, 1976, 2287, 2833, 2959, 3169, 3299
Bsp1720I	GCTNAGC	2 cut(s)	201, 3123
Bsp19I	CCATGG	1 cut(s)	1848
BspACI	CCGC	8 cut(s)	124, 418, 960, 1464, 2322, 2387, 2581, 3309
BspANI	GGCC	5 cut(s)	417, 1806, 1859, 2073, 2605
BspHI	TCATGA	1 cut(s)	382
BspLI	GGNNCC	6 cut(s)	28, 169, 480, 1250, 1349, 2074
BspMAI	CTGCAG	1 cut(s)	2758
BspMI	ACCTGC	1 cut(s)	1204
BspPI	GGATC	5 cut(s)	1243, 1256, 1984, 2967, 3164
BspQI	GCTCTTC	1 cut(s)	2137
BspT104I	TTCGAA	2 cut(s)	263, 3023
BspT107I	GGYRCC	3 cut(s)	26, 167, 478
BspTNI	GGTCTC	2 cut(s)	2938, 3223
BsrBI	CCGCTC	1 cut(s)	126
BsrDI	GCAATG	3 cut(s)	2234, 2412, 2515
BsrFI	RCCGGY	1 cut(s)	2885
BsrI	ACTGG	8 cut(s)	480, 901, 1351, 1415, 2827, 3042, 3185, 3280
BssAI	RCCGGY	1 cut(s)	2885
BssECI	CCNNGG	5 cut(s)	482, 1446, 1717, 1848, 3173
BssMI	GATC	9 cut(s)	1248, 1906, 1936, 1976, 2287, 2833, 2959, 3169, 3299
BssNAI	GTATAC	1 cut(s)	2114
BssNI	GRCGYC	1 cut(s)	168
BssT1I	CCWWGG	2 cut(s)	1446, 1848
Bst1107I	GTATAC	1 cut(s)	2114
Bst2UI	CCWGG	7 cut(s)	483, 1385, 1719, 2610, 2949, 3174, 3223
Bst4CI	ACNGT	9 cut(s)	146, 154, 699, 1260, 1777, 1867, 2121, 3016, 3315
Bst6I	CTCTTC	4 cut(s)	184, 912, 1966, 2137
BstACI	GRCGYC	1 cut(s)	168
BstAPI	GCANNNNNTGC	2 cut(s)	478, 2753
BstBAI	YACGTR	1 cut(s)	2993
BstBI	TTCGAA	2 cut(s)	263, 3023
BstC8I	GCNNGC	6 cut(s)	255, 345, 1111, 2166, 2721, 3129
BstDSI	CCRYGG	1 cut(s)	1848
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	2 cut(s)	170, 549
BstKTI	GATC	9 cut(s)	1251, 1909, 1939, 1979, 2290, 2836, 2962, 3172, 3302
BstMAI	GTCTC	6 cut(s)	52, 505, 705, 909, 2938, 3223
BstMBI	GATC	9 cut(s)	1248, 1906, 1936, 1976, 2287, 2833, 2959, 3169, 3299
BstMCI	CGRYCG	1 cut(s)	145
BstNI	CCWGG	7 cut(s)	483, 1385, 1719, 2610, 2949, 3174, 3223
BstNSI	RCATGY	3 cut(s)	985, 1099, 1727
BstPAI	GACNNNNGTC	1 cut(s)	837
BstSCI	CCNGG	8 cut(s)	481, 1383, 1717, 1744, 2608, 2947, 3172, 3221
BstSFI	CTRYAG	1 cut(s)	2754
BstX2I	RGATCY	3 cut(s)	1248, 1976, 3299
BstYI	RGATCY	3 cut(s)	1248, 1976, 3299
BstZ17I	GTATAC	1 cut(s)	2114
Bsu36I	CCTNAGG	1 cut(s)	920
BsuRI	GGCC	5 cut(s)	417, 1806, 1859, 2073, 2605
BtgI	CCRYGG	1 cut(s)	1848
BtsI	GCAGTG	1 cut(s)	3141
BtsIMutI	CAGTG	2 cut(s)	3035, 3141
BveI	ACCTGC	1 cut(s)	1204
Cac8I	GCNNGC	6 cut(s)	255, 345, 1111, 2166, 2721, 3129
CaiI	CAGNNNCTG	3 cut(s)	488, 2753, 2854
CciI	TCATGA	1 cut(s)	382
CfoI	GCGC	2 cut(s)	170, 549
Cfr10I	RCCGGY	1 cut(s)	2885
Cfr13I	GGNCC	6 cut(s)	150, 162, 1739, 2072, 2603, 2681
CseI	GACGC	1 cut(s)	522
CsiI	ACCWGGT	1 cut(s)	2947
Csp6I	GTAC	3 cut(s)	734, 2599, 3156
CspAI	ACCGGT	1 cut(s)	2885
CspCI	CAANNNNNGTGG	4 cut(s)	2106, 2141, 2365, 2400
CviQI	GTAC	3 cut(s)	734, 2599, 3156
DinI	GGCGCC	1 cut(s)	169
DpnI	GATC	9 cut(s)	1250, 1908, 1938, 1978, 2289, 2835, 2961, 3171, 3301
DpnII	GATC	9 cut(s)	1248, 1906, 1936, 1976, 2287, 2833, 2959, 3169, 3299
DraI	TTTAAA	2 cut(s)	951, 1650
DrdI	GACNNNNNNGTC	2 cut(s)	44, 2153
DseDI	GACNNNNNNGTC	2 cut(s)	44, 2153
EaeI	YGGCCR	1 cut(s)	415
Eam1104I	CTCTTC	4 cut(s)	184, 912, 1966, 2137
EarI	CTCTTC	4 cut(s)	184, 912, 1966, 2137
EciI	GGCGGA	1 cut(s)	1479
Ecl136II	GAGCTC	2 cut(s)	257, 2130
Eco130I	CCWWGG	2 cut(s)	1446, 1848
Eco147I	AGGCCT	1 cut(s)	1859
Eco24I	GRGCYC	2 cut(s)	259, 2132
Eco31I	GGTCTC	2 cut(s)	2938, 3223
Eco32I	GATATC	1 cut(s)	1020
Eco47I	GGWCC	4 cut(s)	150, 162, 1739, 2681
Eco53kI	GAGCTC	2 cut(s)	257, 2130
Eco57I	CTGAAG	7 cut(s)	510, 1187, 1428, 1662, 1947, 2118, 2478
Eco72I	CACGTG	1 cut(s)	2993
Eco81I	CCTNAGG	1 cut(s)	920
Eco88I	CYCGRG	1 cut(s)	2400
EcoICRI	GAGCTC	2 cut(s)	257, 2130
EcoO109I	RGGNCCY	1 cut(s)	2681
EcoRII	CCWGG	7 cut(s)	481, 1383, 1717, 2608, 2947, 3172, 3221
EcoRV	GATATC	1 cut(s)	1020
EcoT14I	CCWWGG	2 cut(s)	1446, 1848
EcoT22I	ATGCAT	2 cut(s)	2284, 2412
EcoT38I	GRGCYC	2 cut(s)	259, 2132
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
ErhI	CCWWGG	2 cut(s)	1446, 1848
Esp3I	CGTCTC	2 cut(s)	52, 505
FaqI	GGGAC	3 cut(s)	499, 1642, 2823
FauNDI	CATATG	2 cut(s)	1539, 2284
FblI	GTMKAC	5 cut(s)	302, 1234, 2113, 2914, 3212
FriOI	GRGCYC	2 cut(s)	259, 2132
FspBI	CTAG	6 cut(s)	240, 804, 1811, 1884, 2006, 3347
GlaI	GCGC	2 cut(s)	169, 548
GsuI	CTGGAG	1 cut(s)	2844
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	5 cut(s)	417, 1806, 1859, 2073, 2605
HapII	CCGG	4 cut(s)	165, 1745, 2423, 2886
HgaI	GACGC	1 cut(s)	522
HhaI	GCGC	2 cut(s)	170, 549
Hin1I	GRCGYC	1 cut(s)	168
Hin6I	GCGC	2 cut(s)	168, 547
HinP1I	GCGC	2 cut(s)	168, 547
HincII	GTYRAC	3 cut(s)	526, 1146, 2500
HindII	GTYRAC	3 cut(s)	526, 1146, 2500
HindIII	AAGCTT	1 cut(s)	1242
HpaII	CCGG	4 cut(s)	165, 1745, 2423, 2886
HphI	GGTGA	8 cut(s)	25, 298, 382, 599, 659, 993, 1556, 3056
Hpy99I	CGWCG	2 cut(s)	143, 158
HpyCH4III	ACNGT	9 cut(s)	146, 154, 699, 1260, 1777, 1867, 2121, 3016, 3315
HpyCH4IV	ACGT	4 cut(s)	45, 2185, 2484, 2992
HpySE526I	ACGT	4 cut(s)	45, 2185, 2484, 2992
Hsp92I	GRCGYC	1 cut(s)	168
HspAI	GCGC	2 cut(s)	168, 547
KasI	GGCGCC	1 cut(s)	167
Kzo9I	GATC	9 cut(s)	1248, 1906, 1936, 1976, 2287, 2833, 2959, 3169, 3299
LguI	GCTCTTC	1 cut(s)	2137
LmnI	GCTCC	4 cut(s)	131, 328, 508, 2173
LweI	GCATC	9 cut(s)	577, 895, 947, 1255, 2269, 2920, 3109, 3187, 3313
MabI	ACCWGGT	1 cut(s)	2947
MaeI	CTAG	6 cut(s)	240, 804, 1811, 1884, 2006, 3347
MaeII	ACGT	4 cut(s)	45, 2185, 2484, 2992
MaeIII	GTNAC	3 cut(s)	286, 2435, 2827
MalI	GATC	9 cut(s)	1250, 1908, 1938, 1978, 2289, 2835, 2961, 3171, 3301
MbiI	CCGCTC	1 cut(s)	126
MboI	GATC	9 cut(s)	1248, 1906, 1936, 1976, 2287, 2833, 2959, 3169, 3299
MflI	RGATCY	3 cut(s)	1248, 1976, 3299
MhlI	GDGCHC	2 cut(s)	259, 2132
Mly113I	GGCGCC	1 cut(s)	168
MlyI	GAGTC	2 cut(s)	863, 1517
MmeI	TCCRAC	4 cut(s)	128, 891, 1759, 2982
Mph1103I	ATGCAT	2 cut(s)	2284, 2412
MseI	TTAA	8 cut(s)	333, 950, 1239, 1296, 1649, 2517, 2546, 2573
MslI	CAYNNNNRTG	1 cut(s)	1542
MspA1I	CMGCKG	2 cut(s)	1109, 2750
MspI	CCGG	4 cut(s)	165, 1745, 2423, 2886
MspR9I	CCNGG	8 cut(s)	483, 1385, 1719, 1746, 2610, 2949, 3174, 3223
Mva1269I	GAATGC	2 cut(s)	549, 934
MvaI	CCWGG	7 cut(s)	483, 1385, 1719, 2610, 2949, 3174, 3223
NarI	GGCGCC	1 cut(s)	168
NciI	CCSGG	1 cut(s)	1746
NcoI	CCATGG	1 cut(s)	1848
NdeI	CATATG	2 cut(s)	1539, 2284
NdeII	GATC	9 cut(s)	1248, 1906, 1936, 1976, 2287, 2833, 2959, 3169, 3299
NlaIV	GGNNCC	6 cut(s)	28, 169, 480, 1250, 1349, 2074
NmeAIII	GCCGAG	1 cut(s)	750
NmuCI	GTSAC	2 cut(s)	286, 2435
NsiI	ATGCAT	2 cut(s)	2284, 2412
NspI	RCATGY	3 cut(s)	985, 1099, 1727
NspV	TTCGAA	2 cut(s)	263, 3023
PagI	TCATGA	1 cut(s)	382
PceI	AGGCCT	1 cut(s)	1859
PciI	ACATGT	1 cut(s)	1723
PciSI	GCTCTTC	1 cut(s)	2137
PcsI	WCGNNNNNNNCGW	2 cut(s)	269, 296
PctI	GAATGC	2 cut(s)	549, 934
PfeI	GAWTC	8 cut(s)	232, 364, 800, 1367, 1402, 1451, 2789, 3290
PflMI	CCANNNNNTGG	2 cut(s)	3041, 3286
PfoI	TCCNGGA	1 cut(s)	3221
PinAI	ACCGGT	1 cut(s)	2885
PleI	GAGTC	2 cut(s)	863, 1517
PluTI	GGCGCC	1 cut(s)	171
PmaCI	CACGTG	1 cut(s)	2993
PmlI	CACGTG	1 cut(s)	2993
PpsI	GAGTC	2 cut(s)	863, 1517
Ppu21I	YACGTR	1 cut(s)	2993
PpuMI	RGGWCCY	1 cut(s)	2681
PscI	ACATGT	1 cut(s)	1723
PshAI	GACNNNNGTC	1 cut(s)	837
Psp124BI	GAGCTC	2 cut(s)	259, 2132
Psp5II	RGGWCCY	1 cut(s)	2681
Psp6I	CCWGG	7 cut(s)	481, 1383, 1717, 2608, 2947, 3172, 3221
PspCI	CACGTG	1 cut(s)	2993
PspGI	CCWGG	7 cut(s)	481, 1383, 1717, 2608, 2947, 3172, 3221
PspN4I	GGNNCC	6 cut(s)	28, 169, 480, 1250, 1349, 2074
PspPI	GGNCC	6 cut(s)	150, 162, 1739, 2072, 2603, 2681
PspPPI	RGGWCCY	1 cut(s)	2681
PstI	CTGCAG	1 cut(s)	2758
PstNI	CAGNNNCTG	3 cut(s)	488, 2753, 2854
PsuI	RGATCY	3 cut(s)	1248, 1976, 3299
PvuII	CAGCTG	2 cut(s)	1109, 2750
RsaI	GTAC	3 cut(s)	735, 2600, 3157
RsaNI	GTAC	3 cut(s)	734, 2599, 3156
RseI	CAYNNNNRTG	1 cut(s)	1542
SacI	GAGCTC	2 cut(s)	259, 2132
SapI	GCTCTTC	1 cut(s)	2137
SaqAI	TTAA	8 cut(s)	333, 950, 1239, 1296, 1649, 2517, 2546, 2573
Sau3AI	GATC	9 cut(s)	1248, 1906, 1936, 1976, 2287, 2833, 2959, 3169, 3299
Sau96I	GGNCC	6 cut(s)	150, 162, 1739, 2072, 2603, 2681
SchI	GAGTC	2 cut(s)	863, 1517
ScrFI	CCNGG	8 cut(s)	483, 1385, 1719, 1746, 2610, 2949, 3174, 3223
SduI	GDGCHC	2 cut(s)	259, 2132
SexAI	ACCWGGT	1 cut(s)	2947
SfaNI	GCATC	9 cut(s)	577, 895, 947, 1255, 2269, 2920, 3109, 3187, 3313
SfcI	CTRYAG	1 cut(s)	2754
SfoI	GGCGCC	1 cut(s)	169
SfuI	TTCGAA	2 cut(s)	263, 3023
SinI	GGWCC	4 cut(s)	150, 162, 1739, 2681
SmiMI	CAYNNNNRTG	1 cut(s)	1542
SmlI	CTYRAG	4 cut(s)	704, 1114, 1615, 1790
SmoI	CTYRAG	4 cut(s)	704, 1114, 1615, 1790
SseBI	AGGCCT	1 cut(s)	1859
SsiI	CCGC	8 cut(s)	124, 418, 960, 1464, 2322, 2387, 2581, 3309
SspDI	GGCGCC	1 cut(s)	167
SspI	AATATT	2 cut(s)	559, 2550
SspMI	CTAG	6 cut(s)	240, 804, 1811, 1884, 2006, 3347
SstI	GAGCTC	2 cut(s)	259, 2132
StuI	AGGCCT	1 cut(s)	1859
StyD4I	CCNGG	8 cut(s)	481, 1383, 1717, 1744, 2608, 2947, 3172, 3221
StyI	CCWWGG	2 cut(s)	1446, 1848
TaaI	ACNGT	9 cut(s)	146, 154, 699, 1260, 1777, 1867, 2121, 3016, 3315
TaiI	ACGT	4 cut(s)	48, 2188, 2487, 2995
TaqI	TCGA	6 cut(s)	9, 117, 192, 263, 530, 3023
TauI	GCSGC	3 cut(s)	420, 2324, 3311
TfiI	GAWTC	8 cut(s)	232, 364, 800, 1367, 1402, 1451, 2789, 3290
Tru1I	TTAA	8 cut(s)	333, 950, 1239, 1296, 1649, 2517, 2546, 2573
Tru9I	TTAA	8 cut(s)	333, 950, 1239, 1296, 1649, 2517, 2546, 2573
TscAI	CASTG	2 cut(s)	3042, 3141
TseFI	GTSAC	2 cut(s)	286, 2435
Tsp45I	GTSAC	2 cut(s)	286, 2435
TspGWI	ACGGA	1 cut(s)	566
TspRI	CASTG	2 cut(s)	3042, 3141
Van91I	CCANNNNNTGG	2 cut(s)	3041, 3286
VpaK11BI	GGWCC	4 cut(s)	150, 162, 1739, 2681
XapI	RAATTY	6 cut(s)	754, 2012, 2208, 2783, 3144, 3260
XceI	RCATGY	3 cut(s)	985, 1099, 1727
XcmI	CCANNNNNNNNNTGG	1 cut(s)	463
XmiI	GTMKAC	5 cut(s)	302, 1234, 2113, 2914, 3212
XspI	CTAG	6 cut(s)	240, 804, 1811, 1884, 2006, 3347
Zsp2I	ATGCAT	2 cut(s)	2284, 2412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.