Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000116.1

Orthogroup ID

OG0011121

Physical Location & Seq

Genomic Coordinates Reverse (-)

28775 .. 38048

Gene Structure 9274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000116.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4359 bp

atggagttcgaggtgaaattagtcggtgccatagaggactgctacgtctccctccctctccccctaatccaaaccctccactcctcctccccatctctccctcccgtcctcgccctcgacctccgctcctcctcaaacgacgaccgctggaccgtcgcttggtccggcgccacctcatcttctcccgcaatcgaggtagctcagcaattcggagagtgtatttcgctgccgaatcgttctagggttcaggtgcgagctctttcgaatgtggcgaaagctactttggtgacgatcgagccgtctactgaggatgattgggaggtcatggagcttaactccgagcttgctgaggctgctatattgaatcaggtgaggattgttcatgaaggaatgaagtttcctttgtggttgcatggccgcaccaccattacatttcttgttgtttcaacctttcccaagaaatcggtggtactgacttgtgagacattgccagtgcaactggtgccagggactgaagtagcagttgctccaaagagacgcaagaatgtcaactcgaatggggatggaatgctctcgtctaatatttcaaaagcactactccgtgttcaagatgcagacaggagattagttcaccaaagtaatgtgaaaggtgttgagcttggagttgttctcacttctgttgctattattcacccagaaacagcaaaaatgttctcattacagtctcttgagttagtagctgttgtgccgagattcgtaccaaaagaaagcatgaaaaattctgaaagtgatgggttgagaataagaagttcaacaacaaaggaatctagtgttagagttccaaatgacaaaaaggataatcgtcaagcagtagttcggctgttgatttccgactcagttgctaaagggcatctaatgattgcccagtctcttcgcctctaccttagggctgtgcatgtatactcgaacgacgttactctggttaatttgaaaatgctattggaagactcaatagttttgattgttattgctggtttaggtgcaagctctaacctcaattcggcagtaatggagttcgaggtgaaattagtcggtgccatagaggactgctacgtctccctccctctccccctaatccaaaccctccactcctcctccccatctctccctcccgtcctcgccctcgacctccgctcctcctcaaacgacgaccgctggaccgtcgcttggtccggcgccacctcatcttctcccgcaatcgaggtagctcagcaattcggagagtgtatttcgctgccgaatcgttctagggttcaggtgcgagctctttcgaatgtggcgaaagctactttggtgacgatcgagccgtctactgaggatgattgggaggtcatggagcttaactccgagcttgctgaggctgctatattgaatcaggtgaggattgttcatgaaggaatgaagtttcctttgtggttgcatggccgcaccaccattacatttcttgttgtttcaacctttcccaagaaatcggtggtgcaactggtgccagggactgaagtagcagttgctccaaagagacgcaagaatgtcaactcgaatggggatggaatgctctcgtctaatatttcaaaagcactactccgtgttcaagatgcagacaggagattagttcaccaaagtaatgtgaaaggtgttgagcttggagttgttctcacttctgttgctattattcacccagaaacagcaaaaatgttctcattacagtctcttgaggtagtagctgttgtgccgagattcgtaccaaaagaaagcatgaaaaattctgaaagtgatgggttgagaataagaagttcaacaacaaaggaatctagtgttagagttccaaatgacaaaaaggataatcgtcaagcagtagttcggctgttgatttccgactcagttgctaaagggcatctaatgattgcccagtctcttcgcctctaccttagggctggtttgcattcatgggtttatttaaagggatgcggtgctattttgaagaataacatgccattgtgttcactttcaccctgccacttcaagatatctcctaaagagaaagctgttgaaagaaatggtttacaagttcttgacaggcatataactcgtatgaagaatgacatgcttctaacacctggctcaagcacctatatagatgttgttgattggtcaacccatgacaaaattgttgctgatttttcttgcaaagaggatgaagaacctgcccatcagtctgacaagggaaatggagtagaaagtctacttaaagcttggatccttgcacagttagatgctattacttccaaagcaggagtagaagttaattcattgattttgggaaatgaaactttgcttcattttgaagtgaaagggaaccagtctgggattgaggaatcatcaaatgatttcctggcaaacaataatatgaatcctgaagttccagttgaagtcttgtatgtattgacaatttccaaggaatctcaatgtggcggaaatgtgtatgagcttgtatttgatgaaagaaacaaaggcaacaacaataatcttgactcacttgaaaagcatatgggtgaacctgtgtccttttattcagtaagagaaagaatgtctgacaaagatattacttctgatatatcttccttgagctggatgggcacaactgcttctgaagttttaaatagaatgttggtgttgctaactcctgcttatggggtatggtttagttcacataatcttcctctccctggacatgttctgatccatggacctccgggttctggaaagacattattagcgagaactgttggaaaatgtcttgaggaacatggaggccttctagcacacatagtttatgtatgctgttctcaacttgccatggaaaaggccttgaccgttcgccaagcactctctagctacatatctgaggctttagatcatgcaccatctcttgtaattcttgacgatcttgatagcattgtttcatcctcttcagaatcagaaggatctcaaccttcaacttctgttgttgcactagcagaatttctcatagacattatggatgaatatggggaaaaaaggaagatctcctgtggaattggcccccttgctttcatagcttcctcaaagtcattagagagtataccacagtcattgagctcttcaggtaggtttgactttcatgtccaaatgcctgctcctgctgcctcagaacgtgcagccattttgaaacatgaaattcagaggcgttgcttgcaatgttctgatgaaatcttacaagatgtagcttccaaatgtgatggctatgatgcatatgatctggaaatcttggttgatagaactgtccatgctgccataggtcgttttctgccttttcagtttgcttctgatgagcgtgaaaaacccactttacttgcggatgatttctctcgggcaatgcatgagttccttccggttgccatgcgtgacatcactaagtctgcttctgaagggggtcgttctgggtgggatgacgttggtggtcttgttgacattcgcaatgcaattaaagagatgattgaattgccttcaaaattcccaaatatctttaaaaaagctcctttaaggttgcggtcaaatgtattattgtatgggccacctggctgtggaaaaacgcatatagttggttctgctgctgctgcctgttcactacgatttatatcagtcaaaggacctgagctgttgaataaatacattggtgcttctgagcaagctgttcgggatatattctccaaagcagctgctgcagcaccatgccttctcttttttgacgaatttgattctattgccccaaaaaggggacatgacaatactggagtaactgatcgtgttgtcaatcagtttctgactgaattggatggtgttgaagttttgactggtgtttttgtgtttgctgcaacaagtagaccagatttgcttgatgctgcgcttctgagacctggtaggctggatcgccttctgttttgtgattttccatctccgcgtgaaaggttggatattctaacagtcctttcgaaaaagctgccactggatggtgatgtggatttatctgccatagctgatatgactgagggatatagtggggctgaccttcaagcacttctgtcagatgctcagcttgcagcagtgcatgaaattctggatggacgagaccatctgtttctgaggctgagaagcaaaaattttacaacatttacagccaattcttggattcaaaaagatccgttgccgcacagtcaagagatgcaaaaggcaagagagcaaccctggcatgagatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042886 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

AAA PEX-1N

Protein Analysis

1452

Amino Acids

159.05

Weight (kDa)

5.89

Isoelectric Point (pI)

52.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08470 AT5G08470 AT5G08470 AT5G08470
fragaria_vesca	FvH4_3g12310
malus_domestica	MD05G1251500.v1.1 MD15G1400900.v1.1
prunus_persica	Prupe.4G112300_v2.0.a1
pyrus_communis	pycom05g22920
rosa_chinensis	RchiOBHm_Chr5g0020121
rosa_laevigata	RLG00000032502
rosa_multiflora	Rmu_sc0000116.1_g000006
rosa_roxburghii	Rroxscaffold_1G00058080
rosa_rugosa	Rorug05G0057400 Rorug05G0057400
rosa_samantha	Rh5AG147300 Rh5BG146900 Rh5CG158300 Rh5DG146200
rosa_wichuraiana	Rw5G013020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	44, 1112, 3221
Acc36I	ACCTGC	1 cut(s)	2272
AccB1I	GGYRCC	6 cut(s)	26, 167, 502, 1094, 1235, 1546
AccB7I	CCANNNNNTGG	2 cut(s)	4109, 4284
AccBSI	CCGCTC	2 cut(s)	126, 1194
AccI	GTMKAC	6 cut(s)	302, 960, 1370, 2302, 3181, 3982
AccII	CGCG	1 cut(s)	4060
AclWI	GGATC	6 cut(s)	2311, 2324, 2794, 3052, 4035, 4292
AcoI	YGGCCR	2 cut(s)	415, 1483
AcsI	RAATTY	8 cut(s)	778, 1822, 3080, 3276, 3611, 3851, 4212, 4258
AcuI	CTGAAG	7 cut(s)	534, 1578, 2496, 2730, 3015, 3186, 3546
AcyI	GRCGYC	2 cut(s)	168, 1236
AfaI	GTAC	3 cut(s)	471, 759, 1803
AflIII	ACRYGT	1 cut(s)	2791
AjnI	CCWGG	8 cut(s)	505, 1549, 2176, 2451, 2785, 3676, 4015, 4343
AjuI	GAANNNNNNNTTGG	6 cut(s)	266, 298, 983, 1015, 1334, 1366
Alw21I	GWGCWC	3 cut(s)	259, 1327, 3200
AlwI	GGATC	6 cut(s)	2311, 2324, 2794, 3052, 4035, 4292
AlwNI	CAGNNNCTG	4 cut(s)	512, 1556, 3821, 3922
Ama87I	CYCGRG	1 cut(s)	3468
AoxI	GGCC	6 cut(s)	415, 1483, 2872, 2925, 3139, 3671
ApoI	RAATTY	8 cut(s)	778, 1822, 3080, 3276, 3611, 3851, 4212, 4258
AspLEI	GCGC	3 cut(s)	170, 1238, 4006
AspS9I	GGNCC	8 cut(s)	150, 162, 1218, 1230, 2807, 3140, 3671, 3749
AsuC2I	CCSGG	1 cut(s)	2814
AsuII	TTCGAA	3 cut(s)	263, 1331, 4091
AvaI	CYCGRG	1 cut(s)	3468
AvaII	GGWCC	6 cut(s)	150, 162, 1218, 1230, 2807, 3749
AxyI	CCTNAGG	2 cut(s)	944, 1988
BaeGI	GKGCMC	1 cut(s)	2699
BamHI	GGATCC	1 cut(s)	2316
BanI	GGYRCC	6 cut(s)	26, 167, 502, 1094, 1235, 1546
BanII	GRGCYC	3 cut(s)	259, 1327, 3200
BbsI	GAAGAC	1 cut(s)	1011
Bbv12I	GWGCWC	3 cut(s)	259, 1327, 3200
BbvCI	CCTCAGC	2 cut(s)	348, 1416
BceAI	ACGGC	2 cut(s)	283, 1351
BciT130I	CCWGG	8 cut(s)	507, 1551, 2178, 2453, 2787, 3678, 4017, 4345
BcnI	CCSGG	1 cut(s)	2814
BfaI	CTAG	7 cut(s)	240, 828, 1308, 1872, 2879, 2952, 3074
BfmI	CTRYAG	1 cut(s)	3822
BfoI	RGCGCY	2 cut(s)	171, 1239
BfuAI	ACCTGC	1 cut(s)	2272
BglII	AGATCT	1 cut(s)	3123
BlpI	GCTNAGC	3 cut(s)	201, 1269, 4191
Bme1390I	CCNGG	9 cut(s)	507, 1551, 2178, 2453, 2787, 2814, 3678, 4017, 4345
Bme18I	GGWCC	6 cut(s)	150, 162, 1218, 1230, 2807, 3749
BmeT110I	CYCGRG	1 cut(s)	3468
BmgT120I	GGNCC	8 cut(s)	150, 162, 1218, 1230, 2807, 3140, 3671, 3749
BmiI	GGNNCC	9 cut(s)	28, 169, 504, 1096, 1237, 1548, 2318, 2417, 3142
BmrFI	CCNGG	9 cut(s)	507, 1551, 2178, 2453, 2787, 2814, 3678, 4017, 4345
BmrI	ACTGGG	2 cut(s)	919, 1963
BmuI	ACTGGG	2 cut(s)	919, 1963
BpiI	GAAGAC	1 cut(s)	1011
BplI	GAGNNNNNCTC	8 cut(s)	320, 352, 654, 686, 1388, 1420, 1698, 1730
BpmI	CTGGAG	1 cut(s)	3912
Bpu10I	CCTNAGC	3 cut(s)	348, 1416, 3753
Bpu1102I	GCTNAGC	3 cut(s)	201, 1269, 4191
Bpu14I	TTCGAA	3 cut(s)	263, 1331, 4091
BpuEI	CTTGAG	5 cut(s)	749, 1793, 2167, 2704, 2879
BpuMI	CCSGG	1 cut(s)	2814
BsaBI	GATNNNNATC	1 cut(s)	3736
BsaHI	GRCGYC	2 cut(s)	168, 1236
BsaI	GGTCTC	2 cut(s)	4006, 4221
BsaJI	CCNNGG	7 cut(s)	506, 1550, 2514, 2785, 2803, 2916, 4343
BsaWI	WCCGGW	1 cut(s)	3490
Bse21I	CCTNAGG	2 cut(s)	944, 1988
Bse3DI	GCAATG	4 cut(s)	485, 3302, 3480, 3583
Bse8I	GATNNNNATC	1 cut(s)	3736
BseBI	CCWGG	8 cut(s)	507, 1551, 2178, 2453, 2787, 3678, 4017, 4345
BseDI	CCNNGG	7 cut(s)	506, 1550, 2514, 2785, 2803, 2916, 4343
BseJI	GATNNNNATC	1 cut(s)	3736
BseMI	GCAATG	4 cut(s)	485, 3302, 3480, 3583
BseRI	GAGGAG	8 cut(s)	73, 76, 118, 121, 1141, 1144, 1186, 1189
BseSI	GKGCMC	1 cut(s)	2699
BsgI	GTGCAG	1 cut(s)	3276
Bsh1236I	CGCG	1 cut(s)	4060
Bsh1285I	CGRYCG	4 cut(s)	145, 294, 1213, 1362
BshFI	GGCC	6 cut(s)	417, 1485, 2874, 2927, 3141, 3673
BshNI	GGYRCC	6 cut(s)	26, 167, 502, 1094, 1235, 1546
BsiEI	CGRYCG	4 cut(s)	145, 294, 1213, 1362
BsiHKAI	GWGCWC	3 cut(s)	259, 1327, 3200
BsiHKCI	CYCGRG	1 cut(s)	3468
BsiSI	CCGG	4 cut(s)	165, 1233, 2813, 3491
BslFI	GGGAC	3 cut(s)	523, 1567, 3891
BsmBI	CGTCTC	4 cut(s)	52, 529, 1120, 1573
BsmFI	GGGAC	3 cut(s)	523, 1567, 3891
BsmI	GAATGC	3 cut(s)	573, 1617, 2002
BsnI	GGCC	6 cut(s)	417, 1485, 2874, 2927, 3141, 3673
Bso31I	GGTCTC	2 cut(s)	4006, 4221
BsoBI	CYCGRG	1 cut(s)	3468
Bsp119I	TTCGAA	3 cut(s)	263, 1331, 4091
Bsp1286I	GDGCHC	4 cut(s)	259, 1327, 2699, 3200
Bsp1720I	GCTNAGC	3 cut(s)	201, 1269, 4191
Bsp19I	CCATGG	2 cut(s)	2803, 2916
BspANI	GGCC	6 cut(s)	417, 1485, 2874, 2927, 3141, 3673
BspFNI	CGCG	1 cut(s)	4060
BspHI	TCATGA	2 cut(s)	382, 1450
BspLI	GGNNCC	9 cut(s)	28, 169, 504, 1096, 1237, 1548, 2318, 2417, 3142
BspMAI	CTGCAG	1 cut(s)	3826
BspMI	ACCTGC	1 cut(s)	2272
BspPI	GGATC	6 cut(s)	2311, 2324, 2794, 3052, 4035, 4292
BspQI	GCTCTTC	1 cut(s)	3205
BspT104I	TTCGAA	3 cut(s)	263, 1331, 4091
BspT107I	GGYRCC	6 cut(s)	26, 167, 502, 1094, 1235, 1546
BspTNI	GGTCTC	2 cut(s)	4006, 4221
BsrBI	CCGCTC	2 cut(s)	126, 1194
BsrDI	GCAATG	4 cut(s)	485, 3302, 3480, 3583
BssECI	CCNNGG	7 cut(s)	506, 1550, 2514, 2785, 2803, 2916, 4343
BssNAI	GTATAC	2 cut(s)	961, 3182
BssNI	GRCGYC	2 cut(s)	168, 1236
BssT1I	CCWWGG	3 cut(s)	2514, 2803, 2916
Bst1107I	GTATAC	2 cut(s)	961, 3182
Bst2UI	CCWGG	8 cut(s)	507, 1551, 2178, 2453, 2787, 3678, 4017, 4345
Bst6I	CTCTTC	4 cut(s)	936, 1980, 3034, 3205
BstACI	GRCGYC	2 cut(s)	168, 1236
BstAPI	GCANNNNNTGC	3 cut(s)	502, 1546, 3821
BstBI	TTCGAA	3 cut(s)	263, 1331, 4091
BstC8I	GCNNGC	9 cut(s)	255, 345, 1045, 1323, 1413, 3234, 3293, 3789, 4197
BstDSI	CCRYGG	2 cut(s)	2803, 2916
BstFNI	CGCG	1 cut(s)	4060
BstH2I	RGCGCY	2 cut(s)	171, 1239
BstHHI	GCGC	3 cut(s)	170, 1238, 4006
BstMCI	CGRYCG	4 cut(s)	145, 294, 1213, 1362
BstNI	CCWGG	8 cut(s)	507, 1551, 2178, 2453, 2787, 3678, 4017, 4345
BstNSI	RCATGY	4 cut(s)	959, 2053, 2167, 2795
BstSCI	CCNGG	9 cut(s)	505, 1549, 2176, 2451, 2785, 2812, 3676, 4015, 4343
BstSFI	CTRYAG	1 cut(s)	3822
BstSLI	GKGCMC	1 cut(s)	2699
BstUI	CGCG	1 cut(s)	4060
BstV2I	GAAGAC	1 cut(s)	1011
BstX2I	RGATCY	4 cut(s)	2316, 3044, 3123, 4297
BstYI	RGATCY	4 cut(s)	2316, 3044, 3123, 4297
BstZ17I	GTATAC	2 cut(s)	961, 3182
Bsu36I	CCTNAGG	2 cut(s)	944, 1988
BsuRI	GGCC	6 cut(s)	417, 1485, 2874, 2927, 3141, 3673
BtgI	CCRYGG	2 cut(s)	2803, 2916
BtsI	GCAGTG	1 cut(s)	4209
BtsIMutI	CAGTG	3 cut(s)	498, 4103, 4209
BveI	ACCTGC	1 cut(s)	2272
Cac8I	GCNNGC	9 cut(s)	255, 345, 1045, 1323, 1413, 3234, 3293, 3789, 4197
CaiI	CAGNNNCTG	4 cut(s)	512, 1556, 3821, 3922
CciI	TCATGA	2 cut(s)	382, 1450
CfoI	GCGC	3 cut(s)	170, 1238, 4006
Cfr13I	GGNCC	8 cut(s)	150, 162, 1218, 1230, 2807, 3140, 3671, 3749
CseI	GACGC	2 cut(s)	546, 1590
CsiI	ACCWGGT	1 cut(s)	4015
Csp6I	GTAC	3 cut(s)	470, 758, 1802
CspCI	CAANNNNNGTGG	4 cut(s)	3174, 3209, 3433, 3468
CviQI	GTAC	3 cut(s)	470, 758, 1802
DinI	GGCGCC	2 cut(s)	169, 1237
DraI	TTTAAA	3 cut(s)	2019, 2718, 3628
DrdI	GACNNNNNNGTC	3 cut(s)	44, 1112, 3221
DseDI	GACNNNNNNGTC	3 cut(s)	44, 1112, 3221
EaeI	YGGCCR	2 cut(s)	415, 1483
Eam1104I	CTCTTC	4 cut(s)	936, 1980, 3034, 3205
EarI	CTCTTC	4 cut(s)	936, 1980, 3034, 3205
EciI	GGCGGA	1 cut(s)	2547
Ecl136II	GAGCTC	3 cut(s)	257, 1325, 3198
Eco130I	CCWWGG	3 cut(s)	2514, 2803, 2916
Eco147I	AGGCCT	2 cut(s)	2874, 2927
Eco24I	GRGCYC	3 cut(s)	259, 1327, 3200
Eco31I	GGTCTC	2 cut(s)	4006, 4221
Eco32I	GATATC	1 cut(s)	2088
Eco47I	GGWCC	6 cut(s)	150, 162, 1218, 1230, 2807, 3749
Eco53kI	GAGCTC	3 cut(s)	257, 1325, 3198
Eco57I	CTGAAG	7 cut(s)	534, 1578, 2496, 2730, 3015, 3186, 3546
Eco81I	CCTNAGG	2 cut(s)	944, 1988
Eco88I	CYCGRG	1 cut(s)	3468
EcoICRI	GAGCTC	3 cut(s)	257, 1325, 3198
EcoO109I	RGGNCCY	1 cut(s)	3749
EcoRII	CCWGG	8 cut(s)	505, 1549, 2176, 2451, 2785, 3676, 4015, 4343
EcoRV	GATATC	1 cut(s)	2088
EcoT14I	CCWWGG	3 cut(s)	2514, 2803, 2916
EcoT22I	ATGCAT	2 cut(s)	3352, 3480
EcoT38I	GRGCYC	3 cut(s)	259, 1327, 3200
EgeI	GGCGCC	2 cut(s)	169, 1237
EheI	GGCGCC	2 cut(s)	169, 1237
ErhI	CCWWGG	3 cut(s)	2514, 2803, 2916
Esp3I	CGTCTC	4 cut(s)	52, 529, 1120, 1573
FaqI	GGGAC	3 cut(s)	523, 1567, 3891
FauI	CCCGC	2 cut(s)	193, 1261
FauNDI	CATATG	2 cut(s)	2607, 3352
FblI	GTMKAC	6 cut(s)	302, 960, 1370, 2302, 3181, 3982
FriOI	GRGCYC	3 cut(s)	259, 1327, 3200
FspBI	CTAG	7 cut(s)	240, 828, 1308, 1872, 2879, 2952, 3074
GlaI	GCGC	3 cut(s)	169, 1237, 4005
GsuI	CTGGAG	1 cut(s)	3912
HaeII	RGCGCY	2 cut(s)	171, 1239
HaeIII	GGCC	6 cut(s)	417, 1485, 2874, 2927, 3141, 3673
HapII	CCGG	4 cut(s)	165, 1233, 2813, 3491
HgaI	GACGC	2 cut(s)	546, 1590
HhaI	GCGC	3 cut(s)	170, 1238, 4006
Hin1I	GRCGYC	2 cut(s)	168, 1236
Hin6I	GCGC	3 cut(s)	168, 1236, 4004
HinP1I	GCGC	3 cut(s)	168, 1236, 4004
HincII	GTYRAC	4 cut(s)	550, 1594, 2214, 3568
HindII	GTYRAC	4 cut(s)	550, 1594, 2214, 3568
HindIII	AAGCTT	1 cut(s)	2310
HpaII	CCGG	4 cut(s)	165, 1233, 2813, 3491
Hpy99I	CGWCG	5 cut(s)	143, 158, 974, 1211, 1226
HpyCH4IV	ACGT	5 cut(s)	45, 972, 1113, 3253, 3552
HpySE526I	ACGT	5 cut(s)	45, 972, 1113, 3253, 3552
Hsp92I	GRCGYC	2 cut(s)	168, 1236
HspAI	GCGC	3 cut(s)	168, 1236, 4004
KasI	GGCGCC	2 cut(s)	167, 1235
LguI	GCTCTTC	1 cut(s)	3205
LmnI	GCTCC	8 cut(s)	131, 328, 532, 1199, 1396, 1576, 3241, 3640
MabI	ACCWGGT	1 cut(s)	4015
MaeI	CTAG	7 cut(s)	240, 828, 1308, 1872, 2879, 2952, 3074
MaeII	ACGT	5 cut(s)	45, 972, 1113, 3253, 3552
MaeIII	GTNAC	5 cut(s)	286, 973, 1354, 3503, 3895
MbiI	CCGCTC	2 cut(s)	126, 1194
MflI	RGATCY	4 cut(s)	2316, 3044, 3123, 4297
MhlI	GDGCHC	4 cut(s)	259, 1327, 2699, 3200
Mly113I	GGCGCC	2 cut(s)	168, 1236
MlyI	GAGTC	4 cut(s)	887, 1001, 1931, 2585
MmeI	TCCRAC	4 cut(s)	915, 1959, 2827, 4050
Mph1103I	ATGCAT	2 cut(s)	3352, 3480
MslI	CAYNNNNRTG	1 cut(s)	2610
MspA1I	CMGCKG	3 cut(s)	147, 1215, 3818
MspI	CCGG	4 cut(s)	165, 1233, 2813, 3491
MspR9I	CCNGG	9 cut(s)	507, 1551, 2178, 2453, 2787, 2814, 3678, 4017, 4345
Mva1269I	GAATGC	3 cut(s)	573, 1617, 2002
MvaI	CCWGG	8 cut(s)	507, 1551, 2178, 2453, 2787, 3678, 4017, 4345
MvnI	CGCG	1 cut(s)	4060
NarI	GGCGCC	2 cut(s)	168, 1236
NciI	CCSGG	1 cut(s)	2814
NcoI	CCATGG	2 cut(s)	2803, 2916
NdeI	CATATG	2 cut(s)	2607, 3352
NlaIV	GGNNCC	9 cut(s)	28, 169, 504, 1096, 1237, 1548, 2318, 2417, 3142
NmeAIII	GCCGAG	2 cut(s)	774, 1818
NmuCI	GTSAC	3 cut(s)	286, 1354, 3503
NsiI	ATGCAT	2 cut(s)	3352, 3480
NspI	RCATGY	4 cut(s)	959, 2053, 2167, 2795
NspV	TTCGAA	3 cut(s)	263, 1331, 4091
PagI	TCATGA	2 cut(s)	382, 1450
PceI	AGGCCT	2 cut(s)	2874, 2927
PciI	ACATGT	1 cut(s)	2791
PciSI	GCTCTTC	1 cut(s)	3205
PcsI	WCGNNNNNNNCGW	4 cut(s)	269, 296, 1337, 1364
PctI	GAATGC	3 cut(s)	573, 1617, 2002
PflMI	CCANNNNNTGG	2 cut(s)	4109, 4284
Ple19I	CGATCG	2 cut(s)	294, 1362
PleI	GAGTC	4 cut(s)	887, 1001, 1931, 2585
PluTI	GGCGCC	2 cut(s)	171, 1239
PpsI	GAGTC	4 cut(s)	887, 1001, 1931, 2585
PpuMI	RGGWCCY	1 cut(s)	3749
PscI	ACATGT	1 cut(s)	2791
Psp124BI	GAGCTC	3 cut(s)	259, 1327, 3200
Psp5II	RGGWCCY	1 cut(s)	3749
Psp6I	CCWGG	8 cut(s)	505, 1549, 2176, 2451, 2785, 3676, 4015, 4343
PspGI	CCWGG	8 cut(s)	505, 1549, 2176, 2451, 2785, 3676, 4015, 4343
PspN4I	GGNNCC	9 cut(s)	28, 169, 504, 1096, 1237, 1548, 2318, 2417, 3142
PspPI	GGNCC	8 cut(s)	150, 162, 1218, 1230, 2807, 3140, 3671, 3749
PspPPI	RGGWCCY	1 cut(s)	3749
PstI	CTGCAG	1 cut(s)	3826
PstNI	CAGNNNCTG	4 cut(s)	512, 1556, 3821, 3922
PsuI	RGATCY	4 cut(s)	2316, 3044, 3123, 4297
PvuI	CGATCG	2 cut(s)	294, 1362
PvuII	CAGCTG	1 cut(s)	3818
RsaI	GTAC	3 cut(s)	471, 759, 1803
RsaNI	GTAC	3 cut(s)	470, 758, 1802
RseI	CAYNNNNRTG	1 cut(s)	2610
SacI	GAGCTC	3 cut(s)	259, 1327, 3200
SapI	GCTCTTC	1 cut(s)	3205
Sau96I	GGNCC	8 cut(s)	150, 162, 1218, 1230, 2807, 3140, 3671, 3749
SchI	GAGTC	4 cut(s)	887, 1001, 1931, 2585
ScrFI	CCNGG	9 cut(s)	507, 1551, 2178, 2453, 2787, 2814, 3678, 4017, 4345
SduI	GDGCHC	4 cut(s)	259, 1327, 2699, 3200
SexAI	ACCWGGT	1 cut(s)	4015
SfcI	CTRYAG	1 cut(s)	3822
SfoI	GGCGCC	2 cut(s)	169, 1237
SfuI	TTCGAA	3 cut(s)	263, 1331, 4091
SinI	GGWCC	6 cut(s)	150, 162, 1218, 1230, 2807, 3749
SmiMI	CAYNNNNRTG	1 cut(s)	2610
SmlI	CTYRAG	5 cut(s)	728, 1772, 2182, 2683, 2858
SmoI	CTYRAG	5 cut(s)	728, 1772, 2182, 2683, 2858
SseBI	AGGCCT	2 cut(s)	2874, 2927
SspDI	GGCGCC	2 cut(s)	167, 1235
SspI	AATATT	2 cut(s)	583, 1627
SspMI	CTAG	7 cut(s)	240, 828, 1308, 1872, 2879, 2952, 3074
SstI	GAGCTC	3 cut(s)	259, 1327, 3200
StuI	AGGCCT	2 cut(s)	2874, 2927
StyD4I	CCNGG	9 cut(s)	505, 1549, 2176, 2451, 2785, 2812, 3676, 4015, 4343
StyI	CCWWGG	3 cut(s)	2514, 2803, 2916
TaiI	ACGT	5 cut(s)	48, 975, 1116, 3256, 3555
TauI	GCSGC	3 cut(s)	420, 1488, 4309
TscAI	CASTG	3 cut(s)	498, 4110, 4209
TseFI	GTSAC	3 cut(s)	286, 1354, 3503
Tsp45I	GTSAC	3 cut(s)	286, 1354, 3503
TspGWI	ACGGA	3 cut(s)	590, 1634, 4290
TspRI	CASTG	3 cut(s)	498, 4110, 4209
Van91I	CCANNNNNTGG	2 cut(s)	4109, 4284
VpaK11BI	GGWCC	6 cut(s)	150, 162, 1218, 1230, 2807, 3749
XapI	RAATTY	8 cut(s)	778, 1822, 3080, 3276, 3611, 3851, 4212, 4258
XceI	RCATGY	4 cut(s)	959, 2053, 2167, 2795
XcmI	CCANNNNNNNNNTGG	2 cut(s)	463, 1531
XmiI	GTMKAC	6 cut(s)	302, 960, 1370, 2302, 3181, 3982
XspI	CTAG	7 cut(s)	240, 828, 1308, 1872, 2879, 2952, 3074
Zsp2I	ATGCAT	2 cut(s)	3352, 3480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.