Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0011121

Physical Location & Seq

Genomic Coordinates Forward (+)

7279063 .. 7286689

Gene Structure 7627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g12310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3390 bp

ATGGAATTCGAGGTGAAGCTAGTCGGCACCATAGAAGACTGCTACGTCTCGCTCCCTCTCGCCCTAATCCAAACCCTCCACTCCTCCTCCCCATCCCTCCCTCCCGTCCTCGCTCTCGACCTCCGCTCCTCCTCCACCGACCACCACTGGACCGTCGCTTGGTCCGGCGCCACCTCATCTTCTCCGGCAATCGAGGTTGCTCAGCAATTCGGAGAGTGCATTTCGCTGCCGGATCGGTCTAGGGTTCAGGTGCGAGCTCTTTCGAGTGTCGACAGGGCTACTCTGGTGACGATCGAGCCGTCTACTGAGGATGACTGGGAGGTCATGGAGCTCAACTCTGAGCTCGCTGAGGCTGCTATATTGAATCAGGTGAGGATTGTTCATGAAGGAATGAAGTTTCCTCTGTGGTTGCACGGCCGCACCACCGTTACGTTTCTTGTTGTTTCAACCTTTCCCAAGAAATCGGTGGTGCAACTGGTGCCAGGGACTGAAGTAGCAGTAGCTCCAAAGAGACGGAAGAATGTCAACTCGAATGGGGATGAAATGCTCGCGTCTGGTGGAGGTCATCATTTTTCAAAAGCACTACTCCGTGTTCAAGATGCAGACAAGAGATTAGTTCACCAAAGTAATGTGAAAGGTGTTGAGCTTGGAGTTGTTCTCACCTCTGTTGGTATTGTTCATCCAGAAACAGCAGAAAGGTTCTCGTTAAAGCCTCTTGAGTTGGTTGCTGTTGTTCCGAGATTGATACCGAAAGAAAGCATGAAAAATTCTGAAAGTGATGGGTTGAGAATAGGAAGTTCAACTCCAAAGGAATCTAGTGTTAGAGTTCCAAATGACAAAAAGGACAATCATCAAGCAGTAGTTCGGCTGTTGATTTCCGACTCAGTTGCTAAAGGGCATCTAATGATTGCCCAGTCTCTTCGCCTCTACCTGAGAGCAGGTTTACATTCATGGGTGTATTTAAAGGGGTGCGGTGGTATTTTGAAGAATAACATGCCAATGTGTTCACTTTCACCCTGCCACTTCAAGATATCTCCCAAAGAGAAAGCAGTTGAAAGAAATGGTCTACAAGTTCTTGACAGGCATAAAACGCGTAAGAAGAATGACATGCTTCTAACACCTGGCTCAAGCACCTATATAGATGTTGTTGATTGGTCAACCCATGACAAAGTTGTTGCTGAATTTTCTTCCAAATCTTCTTGCGAAGAGGATGAAGAACCTGCCCATCACTATGACAAGGGAAATGGAGTAGAAAGTCTTCTTAAAGCTTGGATACTTGCACAGTTAGATGCTATTACTTCCAAAGCAGGAGTGGAAGTTAATTCATTGATTTTGGGAAATGAGACTTTACTTCATTTTGAAGTGAAAGGGAACCAGTCTGGGATTAAGGGTAAGGATCAGGAATCATCAAATGATATCCTGGCAAACAATAATATGAATCCTGAAGTTCCAGTTGAAATCTTGTATGTATTGACAATTTCGAAGGAATCTCAACGTGGCGGAAATGCATATGAGCTTGTATTTGATGAAAGAAACAAAGACAACAACAATACTCTTGAATCACTTGAAAAGCATATGGGTGAACCTGTGTCCTTTTATTCAGTAAGAGAGAGAATGTATGACAAAAACATTACTTCTGATATATCTTCCTTGAGCTGGATGGGGACAACTGCTTCTGAAGTTTTGAATAGAATGTTGGTGTTGCTAACTCCTGCGTATGGGGTATGGTTCAGTTCACAGAACCTTCCTCTCCCTGGACATGTTCTGATTCATGGACCTCCCGGTTCTGGAAAGACGTTATTAGCGAGAACTGTTGGAAGATGTCTTGAGGAACATGGAGGTCTTCTAGCACACATAGTTTATGTATGTTGTTCTCAACTTGCAATGGAAAAGGCCTTGACCGTTCGCCAAGCACTCTCTAGCTACATATCTGAGGCTTTAGATCATGCACCATCTCTTGTAATTCTTGACGATCTTGATAGCATTGTTTCATCCTCTTCGGACTTGGAAGGATCTCAACCTTCAACTTCTGTTGTTGCACTCACAGAATTTCTCATAGACATTATGGATGAATATGGGGAAAAAAGGAAGATCTCCTGTGGAATTGGCCCTCTTGCGTTCATAGCTTCCTCAAAGTCTTTAGAGAGTATACCACAGTTGTTGAGCTCTTCAGGTAGGTTTGACTTTCATGTGCAAATGGTGGCTCCTGCTGCCCCAGAACGTGCAGCCATTTTGAAACATGAGATTCGGCGGCGTTGCTTGCAATGTTCTGATGAAATTGTACAAGATGTAGCTTCCAAATGTGATGGCTATGACGCATATGATCTGGAAATCCTGGTTGATAGAACTGTCCATGCCGCCATAGGTCGTTTTCTGCCTAATCAGTTTGCTTCTGATGAGCGTGAAAACCCCACTTTACTTGCGGATGATTTCTCTCGGGCAATGCATGAGTTCCTTCCGGTTGCCATGCGTGACATTACTAAGTCTGCTCCTGAAGGGGGTCGTTCTGGATGGGATGACGTTGGTGGTCTTGTTGACATTCGCAATGCAATTAAAGAGATGATTGAATTGCCTTCAAAATTCCCAAACATCTTTGCAAAAGCTCCTTTAAGGTTGCGGTCAAATGTATTATTGTATGGGCCACCTGGCTGTGGAAAAACACATATAGTTGGTTCTGCTGCTGCTGCCTGTTCACTACGATTTATATCAGTCAAAGGACCTGAGCTGTTGAATAAATACATTGGTGCTTCTGAGCAAGCTGTTCGGGATATATTCTCCAAAGCAGCTGCTGCAGCACCATGCATTCTCTTTTTTGACGAATTCGATTCTATTGCCCCAAAAAGAGGACATGACAATACTGGGGTAACTGATCGTGTTGTCAATCAGTTTCTGACTGAATTGGATGGTGTTGAAGTTTTGACTGGTGTTTTTGTGTTTGCTGCAACAAGTAGACCGGATTTGCTTGATGCTGCACTTCTCAGACCTGGAAGGCTGGATCGCCTTCTTTTTTGTGATTTTCCATCCCCGCGCGAAAGATTGGATATTCTAACAGTCCTTTCGAAAAAGCTACCACTGGATGCTGATGTGGATTTATCTGCCATAGCTGATATGACTGAGGGATATAGTGGTGCTGACCTTCAAGCACTTCTCTCAGATGCTCAGCTTGCAGCAGTGCATGAAATTCTGGATGGTACGTATACCCATGATCCAGGGAGAAAGCCAGTTATTTCTGACGCTCTCGTGAAGTCAATTGCTTCCAGGACAAGACCATCTGTTTCTGAGGCTGAGAAGAAAAAATTGTATGACATTTACAGCCAGTTCTTGGATTCAAAAAGATCTGTTGCTGCACAGTCAAGAGATGCAAAAGGCAAGAGAGCAACCCTAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042886 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

AAA PEX-1N

Protein Analysis

1130

Amino Acids

123.41

Weight (kDa)

5.86

Isoelectric Point (pI)

46.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEX-1N	PF09262	96 - 169	1.4e-26	Peroxisome biogenesis factor 1, N-terminal
NPHP3_N	PF24883	572 - 686	2e-06	Nephrocystin 3, N-terminal
AAA_16	PF13191	585 - 685	1.3e-06	AAA ATPase domain
AAA	PF00004	588 - 732	5.1e-15	ATPase family associated with various cellular activities (AAA)
AAA	PF00004	876 - 1004	4.1e-39	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	1028 - 1067	6.7e-13	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08470 AT5G08470 AT5G08470 AT5G08470
fragaria_vesca	FvH4_3g12310
malus_domestica	MD05G1251500.v1.1 MD15G1400900.v1.1
prunus_persica	Prupe.4G112300_v2.0.a1
pyrus_communis	pycom05g22920
rosa_chinensis	RchiOBHm_Chr5g0020121
rosa_laevigata	RLG00000032502
rosa_multiflora	Rmu_sc0000116.1_g000006
rosa_roxburghii	Rroxscaffold_1G00058080
rosa_rugosa	Rorug05G0057400 Rorug05G0057400
rosa_samantha	Rh5AG147300 Rh5BG146900 Rh5CG158300 Rh5DG146200
rosa_wichuraiana	Rw5G013020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	44, 320
Acc36I	ACCTGC	2 cut(s)	929, 1228
AccB1I	GGYRCC	3 cut(s)	26, 167, 478
AccB7I	CCANNNNNTGG	1 cut(s)	3322
AccBSI	CCGCTC	1 cut(s)	126
AccI	GTMKAC	6 cut(s)	270, 302, 1066, 2149, 2950, 3197
AccII	CGCG	4 cut(s)	551, 1093, 3028, 3030
AciI	CCGC	9 cut(s)	124, 418, 972, 1500, 2251, 2358, 2423, 2617, 3026
AclWI	GGATC	5 cut(s)	240, 1404, 2020, 3003, 3200
AcoI	YGGCCR	1 cut(s)	415
AcsI	RAATTY	7 cut(s)	5, 766, 1181, 2048, 2579, 2819, 3180
AcuI	CTGAAG	5 cut(s)	510, 1464, 1698, 2154, 2514
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	2 cut(s)	2283, 3193
AfiI	CCNNNNNNNGG	9 cut(s)	159, 1656, 1718, 1754, 1787, 2498, 2651, 2843, 3322
AflIII	ACRYGT	2 cut(s)	1091, 1759
AjnI	CCWGG	9 cut(s)	481, 1120, 1419, 1753, 2334, 2644, 2983, 3208, 3257
AjuI	GAANNNNNNNTTGG	2 cut(s)	1679, 1711
Alw21I	GWGCWC	4 cut(s)	259, 333, 345, 2168
Alw26I	GTCTC	4 cut(s)	52, 505, 921, 1337
AlwI	GGATC	5 cut(s)	240, 1404, 2020, 3003, 3200
AlwNI	CAGNNNCTG	3 cut(s)	488, 2789, 2890
Ama87I	CYCGRG	1 cut(s)	2436
AoxI	GGCC	4 cut(s)	415, 1893, 2107, 2639
ApoI	RAATTY	7 cut(s)	5, 766, 1181, 2048, 2579, 2819, 3180
Asp700I	GAANNNNTTC	1 cut(s)	1257
AspLEI	GCGC	2 cut(s)	170, 3030
AspS9I	GGNCC	6 cut(s)	150, 162, 1775, 2108, 2639, 2717
AsuC2I	CCSGG	1 cut(s)	1782
AsuHPI	GGTGA	7 cut(s)	25, 298, 382, 611, 652, 1005, 1592
AsuII	TTCGAA	2 cut(s)	1481, 3059
AvaI	CYCGRG	1 cut(s)	2436
AvaII	GGWCC	4 cut(s)	150, 162, 1775, 2717
BanI	GGYRCC	3 cut(s)	26, 167, 478
BanII	GRGCYC	4 cut(s)	259, 333, 345, 2168
BarI	GAAGNNNNNNTAC	2 cut(s)	1242, 1274
BauI	CACGAG	1 cut(s)	3239
BbsI	GAAGAC	3 cut(s)	42, 1250, 1835
Bbv12I	GWGCWC	4 cut(s)	259, 333, 345, 2168
BbvCI	CCTCAGC	1 cut(s)	348
BceAI	ACGGC	2 cut(s)	283, 430
BcgI	CGANNNNNNTGC	6 cut(s)	869, 903, 2744, 2778, 2813, 2847
BciT130I	CCWGG	9 cut(s)	483, 1122, 1421, 1755, 2336, 2646, 2985, 3210, 3259
BciVI	GTATCC	1 cut(s)	1266
BcnI	CCSGG	1 cut(s)	1782
BcoDI	GTCTC	4 cut(s)	52, 505, 921, 1337
BfaI	CTAG	6 cut(s)	20, 240, 816, 1847, 1920, 3383
BfmI	CTRYAG	1 cut(s)	2790
BfoI	RGCGCY	1 cut(s)	171
BfuAI	ACCTGC	2 cut(s)	929, 1228
BfuI	GTATCC	1 cut(s)	1266
BglII	AGATCT	2 cut(s)	2091, 3335
BlpI	GCTNAGC	2 cut(s)	201, 3159
Bme18I	GGWCC	4 cut(s)	150, 162, 1775, 2717
BmeT110I	CYCGRG	1 cut(s)	2436
BmgT120I	GGNCC	6 cut(s)	150, 162, 1775, 2108, 2639, 2717
BmiI	GGNNCC	5 cut(s)	28, 169, 480, 1373, 2205
BmrI	ACTGGG	3 cut(s)	325, 907, 2868
BmsI	GCATC	7 cut(s)	589, 907, 1279, 2956, 3067, 3145, 3349
BmuI	ACTGGG	3 cut(s)	325, 907, 2868
BpiI	GAAGAC	3 cut(s)	42, 1250, 1835
BplI	GAGNNNNNCTC	4 cut(s)	320, 352, 642, 674
Bpu10I	CCTNAGC	2 cut(s)	348, 2721
Bpu1102I	GCTNAGC	2 cut(s)	201, 3159
Bpu14I	TTCGAA	2 cut(s)	1481, 3059
BpuEI	CTTGAG	4 cut(s)	737, 1111, 1672, 1847
BpuMI	CCSGG	1 cut(s)	1782
BsaAI	YACGTR	1 cut(s)	3195
BsaBI	GATNNNNATC	1 cut(s)	2704
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	3 cut(s)	482, 1753, 3209
BsaWI	WCCGGW	2 cut(s)	2458, 2953
BsaXI	ACNNNNNCTCC	6 cut(s)	71, 101, 110, 140, 1302, 1332
Bsc4I	CCNNNNNNNGG	9 cut(s)	159, 1656, 1718, 1754, 1787, 2498, 2651, 2843, 3322
Bse3DI	GCAATG	4 cut(s)	1890, 2270, 2448, 2551
Bse8I	GATNNNNATC	1 cut(s)	2704
BseBI	CCWGG	9 cut(s)	483, 1122, 1421, 1755, 2336, 2646, 2985, 3210, 3259
BseDI	CCNNGG	3 cut(s)	482, 1753, 3209
BseJI	GATNNNNATC	1 cut(s)	2704
BseLI	CCNNNNNNNGG	9 cut(s)	159, 1656, 1718, 1754, 1787, 2498, 2651, 2843, 3322
BseMI	GCAATG	4 cut(s)	1890, 2270, 2448, 2551
BseRI	GAGGAG	4 cut(s)	73, 76, 118, 121
BseX3I	CGGCCG	1 cut(s)	415
BsgI	GTGCAG	3 cut(s)	2244, 2955, 3330
Bsh1236I	CGCG	4 cut(s)	551, 1093, 3028, 3030
Bsh1285I	CGRYCG	2 cut(s)	294, 418
BshFI	GGCC	4 cut(s)	417, 1895, 2109, 2641
BshNI	GGYRCC	3 cut(s)	26, 167, 478
BsiEI	CGRYCG	2 cut(s)	294, 418
BsiHKAI	GWGCWC	4 cut(s)	259, 333, 345, 2168
BsiHKCI	CYCGRG	1 cut(s)	2436
BsiSI	CCGG	6 cut(s)	165, 185, 230, 1782, 2459, 2954
BslFI	GGGAC	2 cut(s)	499, 1678
BslI	CCNNNNNNNGG	9 cut(s)	159, 1656, 1718, 1754, 1787, 2498, 2651, 2843, 3322
BsmAI	GTCTC	4 cut(s)	52, 505, 921, 1337
BsmBI	CGTCTC	2 cut(s)	52, 505
BsmFI	GGGAC	2 cut(s)	499, 1678
BsmI	GAATGC	1 cut(s)	2802
BsnI	GGCC	4 cut(s)	417, 1895, 2109, 2641
BsoBI	CYCGRG	1 cut(s)	2436
Bsp119I	TTCGAA	2 cut(s)	1481, 3059
Bsp1286I	GDGCHC	4 cut(s)	259, 333, 345, 2168
Bsp1407I	TGTACA	1 cut(s)	2281
Bsp1720I	GCTNAGC	2 cut(s)	201, 3159
BspACI	CCGC	9 cut(s)	124, 418, 972, 1500, 2251, 2358, 2423, 2617, 3026
BspANI	GGCC	4 cut(s)	417, 1895, 2109, 2641
BspFNI	CGCG	4 cut(s)	551, 1093, 3028, 3030
BspHI	TCATGA	1 cut(s)	382
BspLI	GGNNCC	5 cut(s)	28, 169, 480, 1373, 2205
BspMAI	CTGCAG	1 cut(s)	2794
BspMI	ACCTGC	2 cut(s)	929, 1228
BspPI	GGATC	5 cut(s)	240, 1404, 2020, 3003, 3200
BspQI	GCTCTTC	1 cut(s)	2173
BspT104I	TTCGAA	2 cut(s)	1481, 3059
BspT107I	GGYRCC	3 cut(s)	26, 167, 478
BsrBI	CCGCTC	1 cut(s)	126
BsrDI	GCAATG	4 cut(s)	1890, 2270, 2448, 2551
BsrGI	TGTACA	1 cut(s)	2281
BssECI	CCNNGG	3 cut(s)	482, 1753, 3209
BssNAI	GTATAC	2 cut(s)	2150, 3198
BssNI	GRCGYC	1 cut(s)	168
BssSI	CACGAG	1 cut(s)	3239
Bst1107I	GTATAC	2 cut(s)	2150, 3198
Bst2BI	CACGAG	1 cut(s)	3239
Bst2UI	CCWGG	9 cut(s)	483, 1122, 1421, 1755, 2336, 2646, 2985, 3210, 3259
Bst4CI	ACNGT	9 cut(s)	154, 427, 1284, 1813, 1903, 2157, 2350, 3052, 3351
Bst6I	CTCTTC	4 cut(s)	924, 1200, 2002, 2173
BstACI	GRCGYC	1 cut(s)	168
BstAPI	GCANNNNNTGC	2 cut(s)	478, 2789
BstAUI	TGTACA	1 cut(s)	2281
BstBAI	YACGTR	1 cut(s)	3195
BstBI	TTCGAA	2 cut(s)	1481, 3059
BstC8I	GCNNGC	6 cut(s)	255, 345, 549, 2261, 2757, 3165
BstFNI	CGCG	4 cut(s)	551, 1093, 3028, 3030
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	2 cut(s)	170, 3030
BstMAI	GTCTC	4 cut(s)	52, 505, 921, 1337
BstMCI	CGRYCG	2 cut(s)	294, 418
BstNI	CCWGG	9 cut(s)	483, 1122, 1421, 1755, 2336, 2646, 2985, 3210, 3259
BstNSI	RCATGY	3 cut(s)	997, 1111, 1763
BstSFI	CTRYAG	1 cut(s)	2790
BstSNI	TACGTA	1 cut(s)	3195
BstUI	CGCG	4 cut(s)	551, 1093, 3028, 3030
BstV2I	GAAGAC	3 cut(s)	42, 1250, 1835
BstX2I	RGATCY	3 cut(s)	2012, 2091, 3335
BstYI	RGATCY	3 cut(s)	2012, 2091, 3335
BstZ17I	GTATAC	2 cut(s)	2150, 3198
BstZI	CGGCCG	1 cut(s)	415
BsuI	GTATCC	1 cut(s)	1266
BsuRI	GGCC	4 cut(s)	417, 1895, 2109, 2641
BtsI	GCAGTG	1 cut(s)	3177
BtsIMutI	CAGTG	3 cut(s)	145, 3071, 3177
BveI	ACCTGC	2 cut(s)	929, 1228
Cac8I	GCNNGC	6 cut(s)	255, 345, 549, 2261, 2757, 3165
CaiI	CAGNNNCTG	3 cut(s)	488, 2789, 2890
CciI	TCATGA	1 cut(s)	382
CfoI	GCGC	2 cut(s)	170, 3030
Cfr13I	GGNCC	6 cut(s)	150, 162, 1775, 2108, 2639, 2717
CseI	GACGC	3 cut(s)	540, 2324, 3242
Csp6I	GTAC	2 cut(s)	2282, 3192
CspCI	CAANNNNNGTGG	4 cut(s)	2142, 2177, 2401, 2436
CviQI	GTAC	2 cut(s)	2282, 3192
DinI	GGCGCC	1 cut(s)	169
DraI	TTTAAA	1 cut(s)	963
DrdI	GACNNNNNNGTC	2 cut(s)	44, 320
DseDI	GACNNNNNNGTC	2 cut(s)	44, 320
EaeI	YGGCCR	1 cut(s)	415
EagI	CGGCCG	1 cut(s)	415
Eam1104I	CTCTTC	4 cut(s)	924, 1200, 2002, 2173
EarI	CTCTTC	4 cut(s)	924, 1200, 2002, 2173
EciI	GGCGGA	1 cut(s)	1515
Ecl136II	GAGCTC	4 cut(s)	257, 331, 343, 2166
EclXI	CGGCCG	1 cut(s)	415
Eco105I	TACGTA	1 cut(s)	3195
Eco147I	AGGCCT	1 cut(s)	1895
Eco24I	GRGCYC	4 cut(s)	259, 333, 345, 2168
Eco32I	GATATC	2 cut(s)	1032, 1417
Eco47I	GGWCC	4 cut(s)	150, 162, 1775, 2717
Eco52I	CGGCCG	1 cut(s)	415
Eco53kI	GAGCTC	4 cut(s)	257, 331, 343, 2166
Eco57I	CTGAAG	5 cut(s)	510, 1464, 1698, 2154, 2514
Eco88I	CYCGRG	1 cut(s)	2436
EcoICRI	GAGCTC	4 cut(s)	257, 331, 343, 2166
EcoO109I	RGGNCCY	1 cut(s)	2717
EcoRI	GAATTC	2 cut(s)	5, 2819
EcoRII	CCWGG	9 cut(s)	481, 1120, 1419, 1753, 2334, 2644, 2983, 3208, 3257
EcoRV	GATATC	2 cut(s)	1032, 1417
EcoT22I	ATGCAT	3 cut(s)	1510, 2448, 2804
EcoT38I	GRGCYC	4 cut(s)	259, 333, 345, 2168
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
Esp3I	CGTCTC	2 cut(s)	52, 505
FaqI	GGGAC	2 cut(s)	499, 1678
FauI	CCCGC	1 cut(s)	3033
FauNDI	CATATG	3 cut(s)	1510, 1575, 2320
FblI	GTMKAC	6 cut(s)	270, 302, 1066, 2149, 2950, 3197
FriOI	GRGCYC	4 cut(s)	259, 333, 345, 2168
FspBI	CTAG	6 cut(s)	20, 240, 816, 1847, 1920, 3383
GlaI	GCGC	2 cut(s)	169, 3029
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	4 cut(s)	417, 1895, 2109, 2641
HapII	CCGG	6 cut(s)	165, 185, 230, 1782, 2459, 2954
HgaI	GACGC	3 cut(s)	540, 2324, 3242
HhaI	GCGC	2 cut(s)	170, 3030
Hin1I	GRCGYC	1 cut(s)	168
Hin6I	GCGC	2 cut(s)	168, 3028
HinP1I	GCGC	2 cut(s)	168, 3028
HincII	GTYRAC	4 cut(s)	271, 526, 1158, 2536
HindII	GTYRAC	4 cut(s)	271, 526, 1158, 2536
HindIII	AAGCTT	1 cut(s)	1266
HpaII	CCGG	6 cut(s)	165, 185, 230, 1782, 2459, 2954
HphI	GGTGA	7 cut(s)	25, 298, 382, 611, 652, 1005, 1592
Hpy99I	CGWCG	1 cut(s)	158
HpyCH4III	ACNGT	9 cut(s)	154, 427, 1284, 1813, 1903, 2157, 2350, 3052, 3351
HpyCH4IV	ACGT	7 cut(s)	45, 431, 1495, 1796, 2221, 2520, 3194
HpySE526I	ACGT	7 cut(s)	45, 431, 1495, 1796, 2221, 2520, 3194
Hsp92I	GRCGYC	1 cut(s)	168
HspAI	GCGC	2 cut(s)	168, 3028
KasI	GGCGCC	1 cut(s)	167
LguI	GCTCTTC	1 cut(s)	2173
LmnI	GCTCC	7 cut(s)	57, 131, 328, 508, 2209, 2494, 2608
LweI	GCATC	7 cut(s)	589, 907, 1279, 2956, 3067, 3145, 3349
MaeI	CTAG	6 cut(s)	20, 240, 816, 1847, 1920, 3383
MaeII	ACGT	7 cut(s)	45, 431, 1495, 1796, 2221, 2520, 3194
MaeIII	GTNAC	4 cut(s)	286, 427, 2471, 2863
MbiI	CCGCTC	1 cut(s)	126
MfeI	CAATTG	1 cut(s)	3249
MflI	RGATCY	3 cut(s)	2012, 2091, 3335
MhlI	GDGCHC	4 cut(s)	259, 333, 345, 2168
MluI	ACGCGT	1 cut(s)	1091
Mly113I	GGCGCC	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	875
MmeI	TCCRAC	2 cut(s)	903, 1795
Mph1103I	ATGCAT	3 cut(s)	1510, 2448, 2804
MroXI	GAANNNNTTC	1 cut(s)	1257
MseI	TTAA	7 cut(s)	707, 962, 1263, 1320, 1386, 2553, 2609
MslI	CAYNNNNRTG	3 cut(s)	998, 1230, 1578
MspA1I	CMGCKG	1 cut(s)	2786
MspI	CCGG	6 cut(s)	165, 185, 230, 1782, 2459, 2954
MunI	CAATTG	1 cut(s)	3249
Mva1269I	GAATGC	1 cut(s)	2802
MvaI	CCWGG	9 cut(s)	483, 1122, 1421, 1755, 2336, 2646, 2985, 3210, 3259
MvnI	CGCG	4 cut(s)	551, 1093, 3028, 3030
NarI	GGCGCC	1 cut(s)	168
NciI	CCSGG	1 cut(s)	1782
NdeI	CATATG	3 cut(s)	1510, 1575, 2320
NlaIV	GGNNCC	5 cut(s)	28, 169, 480, 1373, 2205
NmuCI	GTSAC	2 cut(s)	286, 2471
NsiI	ATGCAT	3 cut(s)	1510, 2448, 2804
NspI	RCATGY	3 cut(s)	997, 1111, 1763
NspV	TTCGAA	2 cut(s)	1481, 3059
PagI	TCATGA	1 cut(s)	382
PceI	AGGCCT	1 cut(s)	1895
PciI	ACATGT	1 cut(s)	1759
PciSI	GCTCTTC	1 cut(s)	2173
PcsI	WCGNNNNNNNCGW	2 cut(s)	296, 1802
PctI	GAATGC	1 cut(s)	2802
PdmI	GAANNNNTTC	1 cut(s)	1257
PflMI	CCANNNNNTGG	1 cut(s)	3322
PfoI	TCCNGGA	1 cut(s)	3257
Ple19I	CGATCG	1 cut(s)	294
PleI	GAGTC	1 cut(s)	875
PluTI	GGCGCC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	875
Ppu21I	YACGTR	1 cut(s)	3195
PpuMI	RGGWCCY	1 cut(s)	2717
PscI	ACATGT	1 cut(s)	1759
Psp124BI	GAGCTC	4 cut(s)	259, 333, 345, 2168
Psp5II	RGGWCCY	1 cut(s)	2717
Psp6I	CCWGG	9 cut(s)	481, 1120, 1419, 1753, 2334, 2644, 2983, 3208, 3257
PspGI	CCWGG	9 cut(s)	481, 1120, 1419, 1753, 2334, 2644, 2983, 3208, 3257
PspN4I	GGNNCC	5 cut(s)	28, 169, 480, 1373, 2205
PspPI	GGNCC	6 cut(s)	150, 162, 1775, 2108, 2639, 2717
PspPPI	RGGWCCY	1 cut(s)	2717
PstI	CTGCAG	1 cut(s)	2794
PstNI	CAGNNNCTG	3 cut(s)	488, 2789, 2890
PsuI	RGATCY	3 cut(s)	2012, 2091, 3335
PvuI	CGATCG	1 cut(s)	294
PvuII	CAGCTG	1 cut(s)	2786
RsaI	GTAC	2 cut(s)	2283, 3193
RsaNI	GTAC	2 cut(s)	2282, 3192
RseI	CAYNNNNRTG	3 cut(s)	998, 1230, 1578
SacI	GAGCTC	4 cut(s)	259, 333, 345, 2168
SalI	GTCGAC	1 cut(s)	269
SapI	GCTCTTC	1 cut(s)	2173
SaqAI	TTAA	7 cut(s)	707, 962, 1263, 1320, 1386, 2553, 2609
Sau96I	GGNCC	6 cut(s)	150, 162, 1775, 2108, 2639, 2717
SchI	GAGTC	1 cut(s)	875
SduI	GDGCHC	4 cut(s)	259, 333, 345, 2168
SfaNI	GCATC	7 cut(s)	589, 907, 1279, 2956, 3067, 3145, 3349
SfcI	CTRYAG	1 cut(s)	2790
SfoI	GGCGCC	1 cut(s)	169
SfuI	TTCGAA	2 cut(s)	1481, 3059
SinI	GGWCC	4 cut(s)	150, 162, 1775, 2717
SmiMI	CAYNNNNRTG	3 cut(s)	998, 1230, 1578
SmlI	CTYRAG	4 cut(s)	716, 1126, 1651, 1826
SmoI	CTYRAG	4 cut(s)	716, 1126, 1651, 1826
SnaBI	TACGTA	1 cut(s)	3195
SseBI	AGGCCT	1 cut(s)	1895
SsiI	CCGC	9 cut(s)	124, 418, 972, 1500, 2251, 2358, 2423, 2617, 3026
SspDI	GGCGCC	1 cut(s)	167
SspMI	CTAG	6 cut(s)	20, 240, 816, 1847, 1920, 3383
SstI	GAGCTC	4 cut(s)	259, 333, 345, 2168
StuI	AGGCCT	1 cut(s)	1895
TaaI	ACNGT	9 cut(s)	154, 427, 1284, 1813, 1903, 2157, 2350, 3052, 3351
TaiI	ACGT	7 cut(s)	48, 434, 1498, 1799, 2224, 2523, 3197
TaqII	GACCGA	1 cut(s)	225
TatI	WGTACW	1 cut(s)	2281
TauI	GCSGC	3 cut(s)	420, 2254, 2360
Tru1I	TTAA	7 cut(s)	707, 962, 1263, 1320, 1386, 2553, 2609
Tru9I	TTAA	7 cut(s)	707, 962, 1263, 1320, 1386, 2553, 2609
TscAI	CASTG	3 cut(s)	152, 3078, 3177
TseFI	GTSAC	2 cut(s)	286, 2471
Tsp45I	GTSAC	2 cut(s)	286, 2471
TspGWI	ACGGA	2 cut(s)	529, 578
TspRI	CASTG	3 cut(s)	152, 3078, 3177
Van91I	CCANNNNNTGG	1 cut(s)	3322
VpaK11BI	GGWCC	4 cut(s)	150, 162, 1775, 2717
XapI	RAATTY	7 cut(s)	5, 766, 1181, 2048, 2579, 2819, 3180
XceI	RCATGY	3 cut(s)	997, 1111, 1763
XcmI	CCANNNNNNNNNTGG	2 cut(s)	463, 1309
XmiI	GTMKAC	6 cut(s)	270, 302, 1066, 2149, 2950, 3197
XmnI	GAANNNNTTC	1 cut(s)	1257
XspI	CTAG	6 cut(s)	20, 240, 816, 1847, 1920, 3383
Zsp2I	ATGCAT	3 cut(s)	1510, 2448, 2804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.