AT5G09540

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009201
Physical Location & Seq
Reverse (-)
2962057 .. 2963441
1385 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G09540.1

Sequence Viewer

Length: 843 bp
ATGGTAAGCGACGGCGGCGGCGAGAATAACAGAGCGGAGGCAGATCAGTTGCTTGCTACATCGGAGAAGCTCTTGGCTTCAAGTGACTTTCATGGAGCAAAGACATTTGCGATCCGTGCATGCGAAGCTGACCCATCCCGAACAGACGCAGCTGACTATATCCTCGCCATCGCCGACACTCTCCTCGCCGGAGAAACTACAATCGGAGATTCCAAAGTACCAGACTGGTACGCGGTACTTCGAATCAGCCGCCTAACCCAAAGCCCTGAACACGTCGCGACTCAGTACCGTAGACTCACTCTTCTCCTCAAACTCAATATCAATCGTCTTCCTTTCGCCGATCAAGCGCTTAAACTCGTCTCCGATGCTTGGTATGTCCTCTCTGATCCTCCAAGGAAATCAATTTACGATCGAGAGTTGCAGCTGAGTCAAACTGGTCAATCGGAGAAATTTCAAGATTCGCCATTGCAGAGCCAAGCTGAGACCTTGGAGAATCCTACAGCTACAAGCTTTTGGACCGCTTGTCCTTACTGCTTTTCACTTTTTGAGTACCCAAAGGGTTACGAGGAATGCACATTGAGGTGTCAGCAGTGTAGGAAAGCGTTTGAAGCGGTTAAAACGCAAACGCCACCTGTGGAGAGTAATGGTGAAGGCGTTTACTTTGGTTCTTGGGCTATGTTCCCTGTAGGATTAACAAGTCATCCTAACACCTCTAATTGGTCGCCAATCTCACATCTTTCCGTCTGCACAGGGCAAAGTTCATCTGATCAGCAATCAAATTTGAAGGCTACTCCAAGAAACGATGATGTTGACATATATATTGCAATTTCTGATGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

280

Amino Acids

30.98

Weight (kDa)

4.75

Isoelectric Point (pI)

45.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 75 - 137 1.8e-06 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 35
AccI GTMKAC 1 cut(s) 292
AccII CGCG 2 cut(s) 233, 278
AciI CCGC 7 cut(s) 15, 18, 35, 233, 250, 519, 611
AclWI GGATC 2 cut(s) 106, 380
AcsI RAATTY 2 cut(s) 449, 778
AfaI GTAC 5 cut(s) 219, 230, 237, 287, 551
AfeI AGCGCT 1 cut(s) 348
AfiI CCNNNNNNNGG 2 cut(s) 369, 717
AflIII ACRYGT 1 cut(s) 271
AgsI TTSAA 4 cut(s) 81, 455, 608, 784
AhdI GACNNNNNGTC 1 cut(s) 522
AjiI CACGTC 1 cut(s) 274
AluBI AGCT 7 cut(s) 70, 128, 152, 424, 479, 503, 510
AluI AGCT 7 cut(s) 70, 128, 152, 424, 479, 503, 510
Alw26I GTCTC 2 cut(s) 364, 476
AlwI GGATC 2 cut(s) 106, 380
Aor51HI AGCGCT 1 cut(s) 348
ApeKI GCWGC 2 cut(s) 149, 421
ApoI RAATTY 2 cut(s) 449, 778
AspLEI GCGC 1 cut(s) 349
AspS9I GGNCC 1 cut(s) 516
AsuHPI GGTGA 1 cut(s) 659
AsuII TTCGAA 1 cut(s) 241
AvaII GGWCC 1 cut(s) 516
BbsI GAAGAC 1 cut(s) 320
BbvI GCAGC 2 cut(s) 161, 433
BccI CCATC 2 cut(s) 142, 176
BceAI ACGGC 1 cut(s) 28
BclI TGATCA 1 cut(s) 766
BcoDI GTCTC 2 cut(s) 364, 476
BfmI CTRYAG 2 cut(s) 498, 684
BfoI RGCGCY 1 cut(s) 350
BisI GCNGC 5 cut(s) 16, 19, 150, 250, 422
BlsI GCNGC 5 cut(s) 17, 20, 151, 251, 423
Bme18I GGWCC 1 cut(s) 516
BmeRI GACNNNNNGTC 1 cut(s) 522
BmgBI CACGTC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 516
BmsI GCATC 1 cut(s) 355
BpiI GAAGAC 1 cut(s) 320
Bpu14I TTCGAA 1 cut(s) 241
BsaI GGTCTC 1 cut(s) 476
BsaJI CCNNGG 2 cut(s) 392, 486
Bsc4I CCNNNNNNNGG 2 cut(s) 369, 717
Bse1I ACTGG 2 cut(s) 230, 439
Bse3DI GCAATG 1 cut(s) 464
BseDI CCNNGG 2 cut(s) 392, 486
BseGI GGATG 2 cut(s) 134, 700
BseLI CCNNNNNNNGG 2 cut(s) 369, 717
BseMI GCAATG 1 cut(s) 464
BseMII CTCAG 3 cut(s) 296, 416, 471
BseNI ACTGG 2 cut(s) 230, 439
BseRI GAGGAG 2 cut(s) 173, 296
BseXI GCAGC 2 cut(s) 161, 433
BsgI GTGCAG 1 cut(s) 730
Bsh1236I CGCG 2 cut(s) 233, 278
Bsh1285I CGRYCG 1 cut(s) 412
BsiEI CGRYCG 1 cut(s) 412
BsiSI CCGG 1 cut(s) 189
BslI CCNNNNNNNGG 2 cut(s) 369, 717
BsmAI GTCTC 2 cut(s) 364, 476
BsmBI CGTCTC 1 cut(s) 364
BsmI GAATGC 1 cut(s) 575
Bso31I GGTCTC 1 cut(s) 476
Bsp119I TTCGAA 1 cut(s) 241
Bsp143I GATC 6 cut(s) 43, 111, 340, 385, 409, 766
Bsp68I TCGCGA 1 cut(s) 278
BspACI CCGC 7 cut(s) 15, 18, 35, 233, 250, 519, 611
BspCNI CTCAG 3 cut(s) 295, 417, 472
BspFNI CGCG 2 cut(s) 233, 278
BspPI GGATC 2 cut(s) 106, 380
BspT104I TTCGAA 1 cut(s) 241
BspTNI GGTCTC 1 cut(s) 476
BsrBI CCGCTC 1 cut(s) 35
BsrDI GCAATG 1 cut(s) 464
BsrI ACTGG 2 cut(s) 230, 439
BssECI CCNNGG 2 cut(s) 392, 486
BssMI GATC 6 cut(s) 43, 111, 340, 385, 409, 766
BssT1I CCWWGG 2 cut(s) 392, 486
Bst4CI ACNGT 1 cut(s) 290
Bst6I CTCTTC 1 cut(s) 306
BstBI TTCGAA 1 cut(s) 241
BstC8I GCNNGC 2 cut(s) 54, 121
BstDEI CTNAG 3 cut(s) 282, 425, 480
BstF5I GGATG 2 cut(s) 134, 700
BstFNI CGCG 2 cut(s) 233, 278
BstH2I RGCGCY 1 cut(s) 350
BstHHI GCGC 1 cut(s) 349
BstKTI GATC 6 cut(s) 46, 114, 343, 388, 412, 769
BstMAI GTCTC 2 cut(s) 364, 476
BstMBI GATC 6 cut(s) 43, 111, 340, 385, 409, 766
BstMCI CGRYCG 1 cut(s) 412
BstMWI GCNNNNNNNGC 5 cut(s) 15, 116, 125, 344, 608
BstNSI RCATGY 1 cut(s) 123
BstSFI CTRYAG 2 cut(s) 498, 684
BstUI CGCG 2 cut(s) 233, 278
BstV1I GCAGC 2 cut(s) 161, 433
BstV2I GAAGAC 1 cut(s) 320
BtgZI GCGATG 1 cut(s) 154
BtrI CACGTC 1 cut(s) 274
BtsCI GGATG 2 cut(s) 134, 700
BtsI GCAGTG 1 cut(s) 596
BtsIMutI CAGTG 1 cut(s) 596
BtuMI TCGCGA 1 cut(s) 278
Cac8I GCNNGC 2 cut(s) 54, 121
CfoI GCGC 1 cut(s) 349
Cfr13I GGNCC 1 cut(s) 516
CseI GACGC 1 cut(s) 155
Csp6I GTAC 5 cut(s) 218, 229, 236, 286, 550
CviAII CATG 2 cut(s) 92, 120
CviQI GTAC 5 cut(s) 218, 229, 236, 286, 550
DdeI CTNAG 3 cut(s) 282, 425, 480
DpnI GATC 6 cut(s) 45, 113, 342, 387, 411, 768
DpnII GATC 6 cut(s) 43, 111, 340, 385, 409, 766
DriI GACNNNNNGTC 1 cut(s) 522
Eam1104I CTCTTC 1 cut(s) 306
Eam1105I GACNNNNNGTC 1 cut(s) 522
EarI CTCTTC 1 cut(s) 306
Eco130I CCWWGG 2 cut(s) 392, 486
Eco31I GGTCTC 1 cut(s) 476
Eco47I GGWCC 1 cut(s) 516
Eco47III AGCGCT 1 cut(s) 348
EcoT14I CCWWGG 2 cut(s) 392, 486
ErhI CCWWGG 2 cut(s) 392, 486
Esp3I CGTCTC 1 cut(s) 364
FaeI CATG 2 cut(s) 95, 123
FaiI YATR 8 cut(s) 93, 121, 159, 375, 677, 815, 817, 819
FatI CATG 2 cut(s) 91, 119
FbaI TGATCA 1 cut(s) 766
FblI GTMKAC 1 cut(s) 292
Fnu4HI GCNGC 5 cut(s) 16, 19, 150, 250, 422
FokI GGATG 2 cut(s) 121, 687
Fsp4HI GCNGC 5 cut(s) 16, 19, 150, 250, 422
GlaI GCGC 1 cut(s) 348
GluI GCNGC 5 cut(s) 16, 19, 150, 250, 422
HaeII RGCGCY 1 cut(s) 350
HapII CCGG 1 cut(s) 189
HgaI GACGC 1 cut(s) 155
HhaI GCGC 1 cut(s) 349
Hin1II CATG 2 cut(s) 95, 123
Hin6I GCGC 1 cut(s) 347
HinP1I GCGC 1 cut(s) 347
HincII GTYRAC 1 cut(s) 811
HindII GTYRAC 1 cut(s) 811
HindIII AAGCTT 1 cut(s) 508
HinfI GANTC 7 cut(s) 209, 243, 280, 294, 427, 458, 493
HpaII CCGG 1 cut(s) 189
HphI GGTGA 1 cut(s) 659
Hpy166II GTNNAC 3 cut(s) 293, 658, 811
Hpy188I TCNGA 7 cut(s) 64, 206, 364, 385, 445, 766, 832
Hpy188III TCNNGA 4 cut(s) 138, 277, 413, 455
Hpy8I GTNNAC 3 cut(s) 293, 658, 811
Hpy99I CGWCG 2 cut(s) 14, 278
HpyAV CCTTC 2 cut(s) 644, 778
HpyCH4III ACNGT 1 cut(s) 290
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 6 cut(s) 119, 421, 469, 573, 747, 824
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 116, 125, 344, 608
HpyF3I CTNAG 3 cut(s) 282, 425, 480
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 2 cut(s) 95, 123
HspAI GCGC 1 cut(s) 347
Ksp22I TGATCA 1 cut(s) 766
Kzo9I GATC 6 cut(s) 43, 111, 340, 385, 409, 766
LmnI GCTCC 1 cut(s) 95
LpnPI CCDG 8 cut(s) 202, 211, 234, 279, 420, 645, 696, 735
Lsp1109I GCAGC 2 cut(s) 161, 433
LweI GCATC 1 cut(s) 355
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 2 cut(s) 83, 560
MalI GATC 6 cut(s) 45, 113, 342, 387, 411, 768
MbiI CCGCTC 1 cut(s) 35
MboI GATC 6 cut(s) 43, 111, 340, 385, 409, 766
MboII GAAGA 2 cut(s) 293, 320
MluCI AATT 5 cut(s) 402, 449, 715, 778, 825
MlyI GAGTC 3 cut(s) 274, 288, 436
MnlI CCTC 9 cut(s) 31, 173, 194, 317, 389, 399, 559, 573, 721
MseI TTAA 4 cut(s) 351, 615, 692, 841
MslI CAYNNNNRTG 1 cut(s) 580
MspA1I CMGCKG 2 cut(s) 152, 424
MspI CCGG 1 cut(s) 189
Mva1269I GAATGC 1 cut(s) 575
MvnI CGCG 2 cut(s) 233, 278
MwoI GCNNNNNNNGC 5 cut(s) 15, 116, 125, 344, 608
NdeII GATC 6 cut(s) 43, 111, 340, 385, 409, 766
NlaIII CATG 2 cut(s) 95, 123
NmuCI GTSAC 1 cut(s) 83
NruI TCGCGA 1 cut(s) 278
NspI RCATGY 1 cut(s) 123
NspV TTCGAA 1 cut(s) 241
PaeI GCATGC 1 cut(s) 123
PcsI WCGNNNNNNNCGW 2 cut(s) 18, 171
PctI GAATGC 1 cut(s) 575
PfeI GAWTC 4 cut(s) 209, 243, 458, 493
PkrI GCNGC 5 cut(s) 17, 20, 151, 251, 423
Ple19I CGATCG 1 cut(s) 412
PleI GAGTC 3 cut(s) 274, 288, 435
PpsI GAGTC 3 cut(s) 274, 288, 435
PspPI GGNCC 1 cut(s) 516
PvuI CGATCG 1 cut(s) 412
PvuII CAGCTG 2 cut(s) 152, 424
RruI TCGCGA 1 cut(s) 278
RsaI GTAC 5 cut(s) 219, 230, 237, 287, 551
RsaNI GTAC 5 cut(s) 218, 229, 236, 286, 550
RseI CAYNNNNRTG 1 cut(s) 580
SaqAI TTAA 4 cut(s) 351, 615, 692, 841
SatI GCNGC 5 cut(s) 16, 19, 150, 250, 422
Sau3AI GATC 6 cut(s) 43, 111, 340, 385, 409, 766
Sau96I GGNCC 1 cut(s) 516
SchI GAGTC 3 cut(s) 274, 288, 436
SfaNI GCATC 1 cut(s) 355
SfcI CTRYAG 2 cut(s) 498, 684
SfuI TTCGAA 1 cut(s) 241
SinI GGWCC 1 cut(s) 516
SmiMI CAYNNNNRTG 1 cut(s) 580
SphI GCATGC 1 cut(s) 123
Sse9I AATT 5 cut(s) 402, 449, 715, 778, 825
SsiI CCGC 7 cut(s) 15, 18, 35, 233, 250, 519, 611
StyI CCWWGG 2 cut(s) 392, 486
TaaI ACNGT 1 cut(s) 290
TaiI ACGT 1 cut(s) 276
TaqI TCGA 2 cut(s) 241, 412
TasI AATT 5 cut(s) 402, 449, 715, 778, 825
TauI GCSGC 3 cut(s) 18, 21, 252
TfiI GAWTC 4 cut(s) 209, 243, 458, 493
Tru1I TTAA 4 cut(s) 351, 615, 692, 841
Tru9I TTAA 4 cut(s) 351, 615, 692, 841
TscAI CASTG 1 cut(s) 596
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 2 cut(s) 149, 421
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 2 cut(s) 80, 750
TspGWI ACGGA 2 cut(s) 104, 730
TspRI CASTG 1 cut(s) 596
VpaK11BI GGWCC 1 cut(s) 516
XapI RAATTY 2 cut(s) 449, 778
XceI RCATGY 1 cut(s) 123
XmiI GTMKAC 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.