Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009201

Physical Location & Seq

Genomic Coordinates Reverse (-)

4507395 .. 4508763

Gene Structure 1369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g03930.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGTTCAACCGGTTCGACTCGCCCCCATCCGGGTCGACTCAGCTGTTCGAGAGGCAATTCTTGCAAATGCATCATGTTCAGCAACAGCCCCCGCAGCCGCCGCCCCCGCAGCCACTTCTATTTCATCCCCAACCGTCGCAGCTACTACAATTCCAGCCTCAACCGCCACCACCGCCACAACCACAACCAGAAGTGCAGAGACCACAACCGCAATGGCATTTTCAACAAAAGCGACAGCCACCACCACCACCAGAACACCAACATCAGCAGCAGCAGCAGCAGAACCAGCAGTATCACCACGAACCTCCTCAGCAGCACCGGCAACAATATCAGGAACTTCCACATCTTCTGCTGCAGCAGCAGCAGCAGCAAGAAGTGAGAAAAAACCCTAAAAGTAAGGACGGAAGACCGTCGATGGAGGAGGAAAGGCCGATTCCGATTCCCATCAATGTGACCGAGCCAGCACCTCCGCCCTCTGAATCAACTCCTCCGCCTTCCAAGTCCACTCATGCGCCCCCCGAATCAACTGGCCCCGTTGAGTCAGCTCCCCCTTCTGAGTCAGCTCCCCCTTCTGAGTTGACTCGGCCTCAAACAGTGCCCAAATCGGGGAGCTTCTGGACTTCATGTCCTTACTGTTATAACCTCTTCGAGTATCCAAGCCTTTACGAGGATTGCATGCTTCGGTGTCAGAATTGTAAGAGGGCATTCAATGCAATGGCGATAGCGTCACCGCCTCTGGTGGGGAAGGGCGGTGATGTGAACTTTTGCTGTTGGGGGTATTTCCCATTGGGGTTATTGGAGAATGGTAAAGATACAGGCGGATCATCTGGGGAGTGGACACCATTTTCGACAATGTTTGCCTGCCCAATACAAGGGAAGAAGAATACCGGACGAGCCAAGATTGCTAATTCGGGGCCGAGGGTCTATTACGATGACGAAGAGGCGTTGCTTGATGTTTCGGATCCAAGTGAGGACTCTGATGATGATGAGTGGCAGAGGGTCAGGAGGAAGAAGAAGGCTGTAAGGGCAAGAGCTAAAGCTTCCGTTGCTAAGACTCCGGTGAGAGCTTCGGATAGAATAAGGAAGGGAAGTCAAAATGCCGGTGGGCAGGGTAAGGTTGTCACTGGTGGGGGTGGGGGTGTGGGTGGTGGTTCTGTGTCGAAGGCAGAGTCAAGTAAGAAGTCGATTTCTGGTGCAAGAAAAAGAAGTGCTGCTGCATTGGGGAAGTTGGATTTGAATGTGGAGTTTAGTAATAATGAGGTGGAAGAGCATGCAGCTCAGACAATGAGTGAAGGGAATGGGACAGTCTTGACGAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

441

Amino Acids

48.68

Weight (kDa)

8.33

Isoelectric Point (pI)

71.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09540 AT5G64360 AT5G64360 AT5G64360 AT5G64360 AT5G64360 AT5G64360 AT5G64360
malus_domestica	MD10G1054200.v1.1
prunus_persica	Prupe.8G069000_v2.0.a1
pyrus_communis	pycom05g03930 pycom10g04110
rosa_chinensis	RchiOBHm_Chr6g0271111
rosa_laevigata	RLG00000013746
rosa_multiflora	Rmu_sc0005953.1_g000011
rosa_roxburghii	Rroxscaffold_7G00197300
rosa_rugosa	Rorug06G0058400
rosa_samantha	Rh6AG178300 Rh6BG181900 Rh6CG177400 Rh6DG169500
rosa_wichuraiana	Rw6G015230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	639
AccI	GTMKAC	1 cut(s)	35
AclWI	GGATC	3 cut(s)	829, 956, 969
AfiI	CCNNNNNNNGG	7 cut(s)	29, 30, 605, 606, 667, 740, 872
AgeI	ACCGGT	1 cut(s)	9
AgsI	TTSAA	4 cut(s)	7, 224, 709, 1237
AhdI	GACNNNNNGTC	1 cut(s)	624
AluBI	AGCT	9 cut(s)	43, 142, 545, 563, 612, 1034, 1040, 1067, 1277
AluI	AGCT	9 cut(s)	43, 142, 545, 563, 612, 1034, 1040, 1067, 1277
Alw26I	GTCTC	1 cut(s)	193
AlwI	GGATC	3 cut(s)	829, 956, 969
AoxI	GGCC	4 cut(s)	428, 529, 584, 914
ArsI	GACNNNNNNTTYG	4 cut(s)	829, 861, 1154, 1186
AsiGI	ACCGGT	1 cut(s)	9
AspLEI	GCGC	1 cut(s)	514
AspS9I	GGNCC	2 cut(s)	530, 914
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	4 cut(s)	287, 720, 764, 1072
BaeGI	GKGCMC	1 cut(s)	600
BamHI	GGATCC	1 cut(s)	961
BbsI	GAAGAC	1 cut(s)	412
BbvCI	CCTCAGC	1 cut(s)	309
BccI	CCATC	3 cut(s)	34, 409, 452
BciVI	GTATCC	1 cut(s)	663
BcnI	CCSGG	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	193
BfmI	CTRYAG	1 cut(s)	353
BfuI	GTATCC	1 cut(s)	663
Bme1390I	CCNGG	1 cut(s)	31
BmeRI	GACNNNNNGTC	1 cut(s)	624
BmgT120I	GGNCC	2 cut(s)	530, 914
BmiI	GGNNCC	3 cut(s)	532, 915, 963
BmrFI	CCNGG	1 cut(s)	31
BmsI	GCATC	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	412
Bpu10I	CCTNAGC	1 cut(s)	309
BpuMI	CCSGG	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	443
BsaI	GGTCTC	1 cut(s)	193
BsaJI	CCNNGG	1 cut(s)	917
BsaWI	WCCGGW	3 cut(s)	9, 887, 1057
Bsc4I	CCNNNNNNNGG	7 cut(s)	29, 30, 605, 606, 667, 740, 872
Bse118I	RCCGGY	3 cut(s)	9, 318, 1100
Bse1I	ACTGG	2 cut(s)	532, 1129
Bse3DI	GCAATG	2 cut(s)	218, 720
Bse8I	GATNNNNATC	1 cut(s)	443
BseDI	CCNNGG	1 cut(s)	917
BseGI	GGATG	2 cut(s)	26, 124
BseJI	GATNNNNATC	1 cut(s)	443
BseLI	CCNNNNNNNGG	7 cut(s)	29, 30, 605, 606, 667, 740, 872
BseMI	GCAATG	2 cut(s)	218, 720
BseMII	CTCAG	5 cut(s)	53, 323, 546, 564, 1292
BseNI	ACTGG	2 cut(s)	532, 1129
BseRI	GAGGAG	3 cut(s)	297, 434, 477
BseSI	GKGCMC	1 cut(s)	600
BsgI	GTGCAG	1 cut(s)	215
BshFI	GGCC	4 cut(s)	430, 531, 586, 916
BshTI	ACCGGT	1 cut(s)	9
BsiSI	CCGG	6 cut(s)	10, 30, 319, 888, 1058, 1101
BslFI	GGGAC	1 cut(s)	1315
BslI	CCNNNNNNNGG	7 cut(s)	29, 30, 605, 606, 667, 740, 872
BsmAI	GTCTC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	1315
BsmI	GAATGC	1 cut(s)	704
BsnI	GGCC	4 cut(s)	430, 531, 586, 916
Bso31I	GGTCTC	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	600
Bsp143I	GATC	2 cut(s)	821, 961
BspANI	GGCC	4 cut(s)	430, 531, 586, 916
BspCNI	CTCAG	5 cut(s)	52, 322, 547, 565, 1291
BspLI	GGNNCC	3 cut(s)	532, 915, 963
BspMAI	CTGCAG	1 cut(s)	357
BspPI	GGATC	3 cut(s)	829, 956, 969
BspQI	GCTCTTC	1 cut(s)	1260
BspTNI	GGTCTC	1 cut(s)	193
BsrDI	GCAATG	2 cut(s)	218, 720
BsrFI	RCCGGY	3 cut(s)	9, 318, 1100
BsrI	ACTGG	2 cut(s)	532, 1129
BssAI	RCCGGY	3 cut(s)	9, 318, 1100
BssECI	CCNNGG	1 cut(s)	917
BssMI	GATC	2 cut(s)	821, 961
Bst4CI	ACNGT	5 cut(s)	135, 411, 595, 635, 1306
Bst6I	CTCTTC	3 cut(s)	650, 933, 1260
BstAPI	GCANNNNNTGC	2 cut(s)	61, 710
BstC8I	GCNNGC	4 cut(s)	462, 677, 862, 1272
BstDEI	CTNAG	6 cut(s)	39, 309, 555, 573, 1050, 1278
BstENI	CCTNNNNNAGG	1 cut(s)	665
BstF5I	GGATG	2 cut(s)	26, 124
BstHHI	GCGC	1 cut(s)	514
BstKTI	GATC	2 cut(s)	824, 964
BstMAI	GTCTC	1 cut(s)	193
BstMBI	GATC	2 cut(s)	821, 961
BstNSI	RCATGY	2 cut(s)	679, 1274
BstSCI	CCNGG	1 cut(s)	29
BstSFI	CTRYAG	1 cut(s)	353
BstSLI	GKGCMC	1 cut(s)	600
BstV2I	GAAGAC	1 cut(s)	412
BstX2I	RGATCY	1 cut(s)	961
BstYI	RGATCY	1 cut(s)	961
BsuI	GTATCC	1 cut(s)	663
BsuRI	GGCC	4 cut(s)	430, 531, 586, 916
BtsCI	GGATG	2 cut(s)	26, 124
BtsIMutI	CAGTG	2 cut(s)	600, 1122
Cac8I	GCNNGC	4 cut(s)	462, 677, 862, 1272
CfoI	GCGC	1 cut(s)	514
Cfr10I	RCCGGY	3 cut(s)	9, 318, 1100
Cfr13I	GGNCC	2 cut(s)	530, 914
CseI	GACGC	1 cut(s)	714
CspAI	ACCGGT	1 cut(s)	9
CviAII	CATG	5 cut(s)	74, 509, 624, 676, 1271
DdeI	CTNAG	6 cut(s)	39, 309, 555, 573, 1050, 1278
DpnI	GATC	2 cut(s)	823, 963
DpnII	GATC	2 cut(s)	821, 961
DriI	GACNNNNNGTC	1 cut(s)	624
Eam1104I	CTCTTC	3 cut(s)	650, 933, 1260
Eam1105I	GACNNNNNGTC	1 cut(s)	624
EarI	CTCTTC	3 cut(s)	650, 933, 1260
EciI	GGCGGA	3 cut(s)	459, 480, 834
Eco31I	GGTCTC	1 cut(s)	193
EcoNI	CCTNNNNNAGG	1 cut(s)	665
EcoT22I	ATGCAT	1 cut(s)	72
FaeI	CATG	5 cut(s)	77, 512, 627, 679, 1274
FaiI	YATR	6 cut(s)	75, 510, 625, 639, 677, 1272
FaqI	GGGAC	1 cut(s)	1315
FatI	CATG	5 cut(s)	73, 508, 623, 675, 1270
FauI	CCCGC	2 cut(s)	99, 114
FblI	GTMKAC	1 cut(s)	35
FokI	GGATG	2 cut(s)	13, 111
GlaI	GCGC	1 cut(s)	513
HaeIII	GGCC	4 cut(s)	430, 531, 586, 916
HapII	CCGG	6 cut(s)	10, 30, 319, 888, 1058, 1101
HgaI	GACGC	1 cut(s)	714
HhaI	GCGC	1 cut(s)	514
Hin1II	CATG	5 cut(s)	77, 512, 627, 679, 1274
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HincII	GTYRAC	2 cut(s)	36, 579
HindII	GTYRAC	2 cut(s)	36, 579
HindIII	AAGCTT	1 cut(s)	1038
HpaII	CCGG	6 cut(s)	10, 30, 319, 888, 1058, 1101
HphI	GGTGA	4 cut(s)	287, 720, 764, 1072
Hpy166II	GTNNAC	5 cut(s)	36, 504, 579, 760, 837
Hpy188I	TCNGA	9 cut(s)	438, 478, 556, 574, 690, 961, 979, 1072, 1281
Hpy188III	TCNNGA	5 cut(s)	49, 332, 616, 1003, 1309
Hpy8I	GTNNAC	5 cut(s)	36, 504, 579, 760, 837
Hpy99I	CGWCG	2 cut(s)	139, 415
HpyAV	CCTTC	8 cut(s)	504, 561, 579, 739, 1009, 1078, 1156, 1286
HpyCH4III	ACNGT	5 cut(s)	135, 411, 595, 635, 1306
HpyCH4V	TGCA	9 cut(s)	64, 70, 196, 355, 675, 713, 1196, 1217, 1274
HpyF3I	CTNAG	6 cut(s)	39, 309, 555, 573, 1050, 1278
Hsp92II	CATG	5 cut(s)	77, 512, 627, 679, 1274
HspAI	GCGC	1 cut(s)	512
Kzo9I	GATC	2 cut(s)	821, 961
LguI	GCTCTTC	1 cut(s)	1260
LmnI	GCTCC	3 cut(s)	550, 568, 609
LweI	GCATC	1 cut(s)	79
MaeIII	GTNAC	3 cut(s)	451, 726, 1120
MalI	GATC	2 cut(s)	823, 963
MboI	GATC	2 cut(s)	821, 961
MboII	GAAGA	9 cut(s)	338, 417, 637, 889, 892, 950, 1021, 1024, 1277
MflI	RGATCY	1 cut(s)	961
MhlI	GDGCHC	1 cut(s)	600
MluCI	AATT	4 cut(s)	56, 149, 691, 907
MlyI	GAGTC	8 cut(s)	11, 31, 548, 566, 574, 968, 1048, 1178
MmeI	TCCRAC	1 cut(s)	1209
Mph1103I	ATGCAT	1 cut(s)	72
MslI	CAYNNNNRTG	1 cut(s)	449
MspA1I	CMGCKG	1 cut(s)	43
MspI	CCGG	6 cut(s)	10, 30, 319, 888, 1058, 1101
MspR9I	CCNGG	1 cut(s)	31
Mva1269I	GAATGC	1 cut(s)	704
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	2 cut(s)	821, 961
NlaIII	CATG	5 cut(s)	77, 512, 627, 679, 1274
NlaIV	GGNNCC	3 cut(s)	532, 915, 963
NmeAIII	GCCGAG	2 cut(s)	562, 942
NmuCI	GTSAC	3 cut(s)	451, 726, 1120
NsiI	ATGCAT	1 cut(s)	72
NspI	RCATGY	2 cut(s)	679, 1274
PaeI	GCATGC	2 cut(s)	679, 1274
PciSI	GCTCTTC	1 cut(s)	1260
PctI	GAATGC	1 cut(s)	704
PfeI	GAWTC	4 cut(s)	433, 439, 479, 521
PinAI	ACCGGT	1 cut(s)	9
PleI	GAGTC	8 cut(s)	11, 31, 547, 565, 574, 968, 1048, 1177
PpsI	GAGTC	8 cut(s)	11, 31, 547, 565, 574, 968, 1048, 1177
PsiI	TTATAA	1 cut(s)	639
PspN4I	GGNNCC	3 cut(s)	532, 915, 963
PspPI	GGNCC	2 cut(s)	530, 914
PstI	CTGCAG	1 cut(s)	357
PsuI	RGATCY	1 cut(s)	961
PvuII	CAGCTG	1 cut(s)	43
RseI	CAYNNNNRTG	1 cut(s)	449
SalI	GTCGAC	1 cut(s)	34
SapI	GCTCTTC	1 cut(s)	1260
Sau3AI	GATC	2 cut(s)	821, 961
Sau96I	GGNCC	2 cut(s)	530, 914
SchI	GAGTC	8 cut(s)	11, 31, 548, 566, 574, 968, 1048, 1178
ScrFI	CCNGG	1 cut(s)	31
SduI	GDGCHC	1 cut(s)	600
SfaNI	GCATC	1 cut(s)	79
SfcI	CTRYAG	1 cut(s)	353
SmiMI	CAYNNNNRTG	1 cut(s)	449
SphI	GCATGC	2 cut(s)	679, 1274
Sse9I	AATT	4 cut(s)	56, 149, 691, 907
StyD4I	CCNGG	1 cut(s)	29
TaaI	ACNGT	5 cut(s)	135, 411, 595, 635, 1306
TaqI	TCGA	8 cut(s)	15, 35, 48, 413, 648, 848, 1160, 1184
TaqII	GACCGA	1 cut(s)	470
TasI	AATT	4 cut(s)	56, 149, 691, 907
TauI	GCSGC	2 cut(s)	100, 103
TfiI	GAWTC	4 cut(s)	433, 439, 479, 521
TscAI	CASTG	2 cut(s)	600, 1129
TseFI	GTSAC	3 cut(s)	451, 726, 1120
Tsp45I	GTSAC	3 cut(s)	451, 726, 1120
TspDTI	ATGAA	2 cut(s)	113, 612
TspGWI	ACGGA	2 cut(s)	417, 1033
TspRI	CASTG	2 cut(s)	600, 1129
XagI	CCTNNNNNAGG	1 cut(s)	665
XceI	RCATGY	2 cut(s)	679, 1274
XcmI	CCANNNNNNNNNTGG	1 cut(s)	210
XmiI	GTMKAC	1 cut(s)	35
Zsp2I	ATGCAT	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.