Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014228

Physical Location & Seq

Genomic Coordinates Reverse (-)

3042904 .. 3044546

Gene Structure 1643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G09800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGAGGAGCGATGATCTTTACATCACCACCGTCCCTTGTTTCTTCAAATGTCCAATTTCACTTGATGTGATGAAATCTCCGGTGAGTCTCTCCACCGGCGTTACATACGACCGAGTTAGCATCCAACGTTGGCTCGATGATGGTAACAATACTTGTCCCGCGACGATGCAGATTCTTCAGAACAAAGAATTCGTACCTAACCTAACTCTTCACCGTCTCATTGATCACTGGTCCGACTCCATCAACCGTCGAGCCGATTCTGAGTCTCCGGAATCCGATACTCCGACGCGAGACGAAATTAACGCTGCGATTGAGAGATTCCGGATCGAGAATGATGCTCGTTCGAAGATTCTCCGGTTCGCGAGAGAATCTGATGAGAACAGAGAGTTTCTCGCCGGGAAAGATGATTTCGTAGCGATGCTTGTGGATCTCATTAGCGATTCCAGAAACTTCTCTGATTCTCAATTGCTACTCGTTGGAGAAGCGGTGAAGATTCTGAGCATGATTCGTCGGAAAATCTTCGATCGGAGACGGTTATCGAATCTGATCTTAACGAACGGTGGTGATTGCTTGACTTCCTTCTTCCTATTGATTAAACGCGGGAATCCAAAATTGAAGATCGATTGCTCCGCCGTGCTTGAGTTTATCGCCGTCGACGCAGAGTCAAAGCTTATAATCGCCAAGGGAGAAGGATTGGTCACCGAGATTATTAAATTGATAAGCTCAGATTCCGACTCAAGCTTAATCGAAGCGAATTTATCTTTATTAATCGCGATTGCGTCTTCAAAACGCGTGAAACTCGCATTAATCAGAGAAAAGCTAGTCACGAAACTCACGAGTTTGTTAACAGATCCAACTACGAGCGTTTCAGTGACGGAAAAATGCTTAAAGCTTCTCGAAGCTATTTCGTCTTGTAAAGAAGGTCGATCGGAGATTTGTGATGGTGTGTGCGTGGAGACGGTGGTGAATAAGCTGATGAAAGTGTCGACGGCGGCGACTGAACACGCCGTTACGGTTTTGTGGAGCGTCTGTTATCTTTTCAAGGAAAAGAAGGCGCAAGATGCCGTTATTAGAATTAACGGCGTTACGAAGATACTGTTACTTTTACAGAGTAATTGCTCGCTTACCGTTAGGCATATGCTAACGGATCTTCTTAAGGTGTTCAAGGTGAACTCAAGATCTTGCCTTTCGGTATACGAAACCAAAACGACACATATTATGCCGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0033612 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0055044 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

409

Amino Acids

45.77

Weight (kDa)

8.19

Isoelectric Point (pI)

45.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	11 - 79	1.4e-17	U-box domain
ARM_PUB	PF25598	99 - 406	4.6e-100	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09800 AT5G64660
fragaria_vesca	FvH4_1g24000
malus_domestica	MD01G1010900.v1.1
prunus_persica	Prupe.6G159600_v2.0.a1
pyrus_communis	pycom01g03990 pycom1353g00040
rosa_chinensis	RchiOBHm_Chr2g0120131
rosa_laevigata	RLG00000018524
rosa_multiflora	Rmu_sc0016643.1_g000003
rosa_roxburghii	Rroxscaffold_2G00123700
rosa_rugosa	Rorug02G0227000
rosa_samantha	Rh2AG283600 Rh2BG294900 Rh2CG272300 Rh2DG308600
rosa_wichuraiana	Rw2G022710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	674
AccI	GTMKAC	3 cut(s)	654, 986, 1194
AccII	CGCG	6 cut(s)	161, 289, 362, 600, 773, 792
AccIII	TCCGGA	2 cut(s)	268, 321
AciI	CCGC	5 cut(s)	159, 485, 600, 630, 992
AclI	AACGTT	1 cut(s)	127
AclWI	GGATC	4 cut(s)	332, 435, 845, 1155
AcsI	RAATTY	2 cut(s)	188, 754
AcuI	CTGAAG	1 cut(s)	161
AfaI	GTAC	1 cut(s)	195
AflII	CTTAAG	1 cut(s)	1154
AflIII	ACRYGT	1 cut(s)	790
AgsI	TTSAA	5 cut(s)	46, 616, 786, 1042, 1165
AhdI	GACNNNNNGTC	1 cut(s)	661
AluBI	AGCT	7 cut(s)	670, 723, 741, 820, 892, 902, 973
AluI	AGCT	7 cut(s)	670, 723, 741, 820, 892, 902, 973
Alw26I	GTCTC	6 cut(s)	92, 221, 270, 285, 523, 950
AlwI	GGATC	4 cut(s)	332, 435, 845, 1155
Aor13HI	TCCGGA	2 cut(s)	268, 321
ApeKI	GCWGC	1 cut(s)	305
ApoI	RAATTY	2 cut(s)	188, 754
AseI	ATTAAT	2 cut(s)	767, 806
Asp700I	GAANNNNTTC	1 cut(s)	518
AspLEI	GCGC	1 cut(s)	1057
AspS9I	GGNCC	1 cut(s)	231
AsuC2I	CCSGG	1 cut(s)	397
AsuHPI	GGTGA	8 cut(s)	16, 94, 203, 499, 575, 691, 976, 1180
AsuII	TTCGAA	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	231
BauI	CACGAG	1 cut(s)	835
BbsI	GAAGAC	1 cut(s)	774
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	3 cut(s)	134, 248, 935
BceAI	ACGGC	7 cut(s)	617, 635, 992, 1005, 1049, 1096, 1207
BcgI	CGANNNNNNTGC	2 cut(s)	317, 351
BclI	TGATCA	1 cut(s)	223
BcnI	CCSGG	1 cut(s)	397
BcoDI	GTCTC	6 cut(s)	92, 221, 270, 285, 523, 950
BfaI	CTAG	1 cut(s)	821
BfrI	CTTAAG	1 cut(s)	1154
BglII	AGATCT	1 cut(s)	1178
BisI	GCNGC	2 cut(s)	306, 993
BlsI	GCNGC	2 cut(s)	307, 994
Bme1390I	CCNGG	1 cut(s)	397
Bme18I	GGWCC	1 cut(s)	231
BmeRI	GACNNNNNGTC	1 cut(s)	661
BmgT120I	GGNCC	1 cut(s)	231
BmrFI	CCNGG	1 cut(s)	397
BmsI	GCATC	5 cut(s)	129, 156, 325, 408, 1051
BpiI	GAAGAC	1 cut(s)	774
BplI	GAGNNNNNCTC	2 cut(s)	375, 407
Bpu14I	TTCGAA	1 cut(s)	344
BpuEI	CTTGAG	3 cut(s)	659, 721, 1159
BpuMI	CCSGG	1 cut(s)	397
Bsa29I	ATCGAT	1 cut(s)	621
BsaJI	CCNNGG	1 cut(s)	681
BsaWI	WCCGGW	4 cut(s)	79, 268, 321, 354
BsaXI	ACNNNNNCTCC	4 cut(s)	471, 501, 1015, 1045
Bse118I	RCCGGY	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	233
BseAI	TCCGGA	2 cut(s)	268, 321
BseCI	ATCGAT	1 cut(s)	621
BseDI	CCNNGG	1 cut(s)	681
BseGI	GGATG	1 cut(s)	120
BseMII	CTCAG	3 cut(s)	252, 488, 738
BseNI	ACTGG	1 cut(s)	233
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	292
Bsh1236I	CGCG	6 cut(s)	161, 289, 362, 600, 773, 792
Bsh1285I	CGRYCG	3 cut(s)	112, 526, 929
BshVI	ATCGAT	1 cut(s)	621
BsiEI	CGRYCG	3 cut(s)	112, 526, 929
BsiSI	CCGG	6 cut(s)	80, 96, 269, 322, 355, 396
BslFI	GGGAC	2 cut(s)	17, 141
BsmAI	GTCTC	6 cut(s)	92, 221, 270, 285, 523, 950
BsmBI	CGTCTC	4 cut(s)	221, 285, 523, 950
BsmFI	GGGAC	2 cut(s)	17, 141
Bsp119I	TTCGAA	1 cut(s)	344
Bsp13I	TCCGGA	2 cut(s)	268, 321
Bsp68I	TCGCGA	2 cut(s)	362, 773
BspACI	CCGC	5 cut(s)	159, 485, 600, 630, 992
BspCNI	CTCAG	3 cut(s)	253, 489, 737
BspDI	ATCGAT	1 cut(s)	621
BspEI	TCCGGA	2 cut(s)	268, 321
BspFNI	CGCG	6 cut(s)	161, 289, 362, 600, 773, 792
BspPI	GGATC	4 cut(s)	332, 435, 845, 1155
BspT104I	TTCGAA	1 cut(s)	344
BspTI	CTTAAG	1 cut(s)	1154
BsrFI	RCCGGY	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	233
BssAI	RCCGGY	1 cut(s)	95
BssECI	CCNNGG	1 cut(s)	681
BssNAI	GTATAC	1 cut(s)	1195
BssSI	CACGAG	1 cut(s)	835
BssT1I	CCWWGG	1 cut(s)	681
Bst1107I	GTATAC	1 cut(s)	1195
Bst2BI	CACGAG	1 cut(s)	835
Bst4CI	ACNGT	9 cut(s)	31, 215, 248, 534, 560, 961, 1015, 1098, 1129
Bst6I	CTCTTC	1 cut(s)	213
BstAFI	CTTAAG	1 cut(s)	1154
BstBI	TTCGAA	1 cut(s)	344
BstC8I	GCNNGC	1 cut(s)	1121
BstDEI	CTNAG	3 cut(s)	261, 497, 724
BstEII	GGTNACC	1 cut(s)	697
BstF5I	GGATG	1 cut(s)	120
BstFNI	CGCG	6 cut(s)	161, 289, 362, 600, 773, 792
BstHHI	GCGC	1 cut(s)	1057
BstMAI	GTCTC	6 cut(s)	92, 221, 270, 285, 523, 950
BstMCI	CGRYCG	3 cut(s)	112, 526, 929
BstMWI	GCNNNNNNNGC	2 cut(s)	656, 1061
BstPI	GGTNACC	1 cut(s)	697
BstSCI	CCNGG	1 cut(s)	395
BstUI	CGCG	6 cut(s)	161, 289, 362, 600, 773, 792
BstV1I	GCAGC	1 cut(s)	292
BstV2I	GAAGAC	1 cut(s)	774
BstX2I	RGATCY	4 cut(s)	427, 850, 1147, 1178
BstYI	RGATCY	4 cut(s)	427, 850, 1147, 1178
BstZ17I	GTATAC	1 cut(s)	1195
Bsu15I	ATCGAT	1 cut(s)	621
BsuTUI	ATCGAT	1 cut(s)	621
BtgZI	GCGATG	2 cut(s)	24, 431
BtsCI	GGATG	1 cut(s)	120
BtsIMutI	CAGTG	2 cut(s)	226, 876
BtuMI	TCGCGA	2 cut(s)	362, 773
Cac8I	GCNNGC	1 cut(s)	1121
CfoI	GCGC	1 cut(s)	1057
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	1 cut(s)	231
ClaI	ATCGAT	1 cut(s)	621
CseI	GACGC	4 cut(s)	295, 665, 768, 1015
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	1 cut(s)	502
CviJI	RGCY	9 cut(s)	133, 254, 670, 723, 741, 820, 892, 902, 973
CviKI_1	RGCY	9 cut(s)	133, 254, 670, 723, 741, 820, 892, 902, 973
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	3 cut(s)	261, 497, 724
DriI	GACNNNNNGTC	1 cut(s)	661
Eam1104I	CTCTTC	1 cut(s)	213
Eam1105I	GACNNNNNGTC	1 cut(s)	661
EarI	CTCTTC	1 cut(s)	213
EciI	GGCGGA	1 cut(s)	619
Eco130I	CCWWGG	1 cut(s)	681
Eco47I	GGWCC	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	161
Eco91I	GGTNACC	1 cut(s)	697
EcoO65I	GGTNACC	1 cut(s)	697
EcoRI	GAATTC	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	681
ErhI	CCWWGG	1 cut(s)	681
Esp3I	CGTCTC	4 cut(s)	221, 285, 523, 950
FaeI	CATG	1 cut(s)	505
FaiI	YATR	8 cut(s)	106, 503, 674, 1137, 1139, 1195, 1215, 1220
FaqI	GGGAC	2 cut(s)	17, 141
FatI	CATG	1 cut(s)	501
FauI	CCCGC	2 cut(s)	166, 593
FauNDI	CATATG	1 cut(s)	1137
FbaI	TGATCA	1 cut(s)	223
FblI	GTMKAC	3 cut(s)	654, 986, 1194
Fnu4HI	GCNGC	2 cut(s)	306, 993
FokI	GGATG	1 cut(s)	107
Fsp4HI	GCNGC	2 cut(s)	306, 993
FspBI	CTAG	1 cut(s)	821
GlaI	GCGC	1 cut(s)	1056
GluI	GCNGC	2 cut(s)	306, 993
HapII	CCGG	6 cut(s)	80, 96, 269, 322, 355, 396
HgaI	GACGC	4 cut(s)	295, 665, 768, 1015
HhaI	GCGC	1 cut(s)	1057
Hin1II	CATG	1 cut(s)	505
Hin6I	GCGC	1 cut(s)	1055
HinP1I	GCGC	1 cut(s)	1055
HincII	GTYRAC	3 cut(s)	655, 846, 987
HindII	GTYRAC	3 cut(s)	655, 846, 987
HindIII	AAGCTT	3 cut(s)	668, 739, 890
HpaI	GTTAAC	1 cut(s)	846
HpaII	CCGG	6 cut(s)	80, 96, 269, 322, 355, 396
HphI	GGTGA	8 cut(s)	16, 94, 203, 499, 575, 691, 976, 1180
Hpy166II	GTNNAC	5 cut(s)	655, 846, 987, 1171, 1195
Hpy8I	GTNNAC	5 cut(s)	655, 846, 987, 1171, 1195
Hpy99I	CGWCG	7 cut(s)	166, 252, 289, 513, 656, 659, 991
HpyAV	CCTTC	4 cut(s)	589, 683, 914, 1045
HpyCH4III	ACNGT	9 cut(s)	31, 215, 248, 534, 560, 961, 1015, 1098, 1129
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	1 cut(s)	169
HpyF10VI	GCNNNNNNNGC	2 cut(s)	656, 1061
HpyF3I	CTNAG	3 cut(s)	261, 497, 724
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	1 cut(s)	505
HspAI	GCGC	1 cut(s)	1055
Kpn2I	TCCGGA	2 cut(s)	268, 321
Ksp22I	TGATCA	1 cut(s)	223
KspAI	GTTAAC	1 cut(s)	846
LmnI	GCTCC	3 cut(s)	6, 632, 1023
LpnPI	CCDG	8 cut(s)	93, 109, 214, 282, 335, 368, 409, 457
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	5 cut(s)	129, 156, 325, 408, 1051
MaeI	CTAG	1 cut(s)	821
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	8 cut(s)	100, 143, 697, 823, 871, 1009, 1084, 1098
MfeI	CAATTG	1 cut(s)	464
MflI	RGATCY	4 cut(s)	427, 850, 1147, 1178
MluCI	AATT	9 cut(s)	54, 188, 297, 464, 611, 713, 754, 1074, 1114
MluI	ACGCGT	1 cut(s)	790
MlyI	GAGTC	5 cut(s)	94, 230, 272, 671, 728
MmeI	TCCRAC	7 cut(s)	148, 258, 308, 457, 491, 756, 878
MroI	TCCGGA	2 cut(s)	268, 321
MroXI	GAANNNNTTC	1 cut(s)	518
MspCI	CTTAAG	1 cut(s)	1154
MspI	CCGG	6 cut(s)	80, 96, 269, 322, 355, 396
MspR9I	CCNGG	1 cut(s)	397
MunI	CAATTG	1 cut(s)	464
MvnI	CGCG	6 cut(s)	161, 289, 362, 600, 773, 792
MwoI	GCNNNNNNNGC	2 cut(s)	656, 1061
NciI	CCSGG	1 cut(s)	397
NdeI	CATATG	1 cut(s)	1137
NlaIII	CATG	1 cut(s)	505
NmuCI	GTSAC	3 cut(s)	697, 823, 871
NruI	TCGCGA	2 cut(s)	362, 773
NspV	TTCGAA	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	2 cut(s)	833, 992
PdmI	GAANNNNTTC	1 cut(s)	518
PkrI	GCNGC	2 cut(s)	307, 994
Ple19I	CGATCG	2 cut(s)	526, 929
PleI	GAGTC	5 cut(s)	93, 230, 271, 670, 728
PpsI	GAGTC	5 cut(s)	93, 230, 271, 670, 728
PshBI	ATTAAT	2 cut(s)	767, 806
PsiI	TTATAA	1 cut(s)	674
Psp1406I	AACGTT	1 cut(s)	127
PspEI	GGTNACC	1 cut(s)	697
PspPI	GGNCC	1 cut(s)	231
PsuI	RGATCY	4 cut(s)	427, 850, 1147, 1178
PvuI	CGATCG	2 cut(s)	526, 929
RruI	TCGCGA	2 cut(s)	362, 773
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SalI	GTCGAC	2 cut(s)	653, 985
SatI	GCNGC	2 cut(s)	306, 993
Sau96I	GGNCC	1 cut(s)	231
SchI	GAGTC	5 cut(s)	94, 230, 272, 671, 728
ScrFI	CCNGG	1 cut(s)	397
SfaNI	GCATC	5 cut(s)	129, 156, 325, 408, 1051
SfuI	TTCGAA	1 cut(s)	344
SgrAI	CRCCGGYG	1 cut(s)	95
SgrDI	CGTCGACG	1 cut(s)	653
SinI	GGWCC	1 cut(s)	231
SmlI	CTYRAG	4 cut(s)	638, 736, 1154, 1174
SmoI	CTYRAG	4 cut(s)	638, 736, 1154, 1174
Sse9I	AATT	9 cut(s)	54, 188, 297, 464, 611, 713, 754, 1074, 1114
SsiI	CCGC	5 cut(s)	159, 485, 600, 630, 992
SspMI	CTAG	1 cut(s)	821
StyD4I	CCNGG	1 cut(s)	395
StyI	CCWWGG	1 cut(s)	681
TaaI	ACNGT	9 cut(s)	31, 215, 248, 534, 560, 961, 1015, 1098, 1129
TaiI	ACGT	1 cut(s)	130
TaqII	GACCGA	1 cut(s)	126
TasI	AATT	9 cut(s)	54, 188, 297, 464, 611, 713, 754, 1074, 1114
TauI	GCSGC	1 cut(s)	995
TscAI	CASTG	2 cut(s)	233, 876
TseFI	GTSAC	3 cut(s)	697, 823, 871
TseI	GCWGC	1 cut(s)	305
Tsp45I	GTSAC	3 cut(s)	697, 823, 871
TspDTI	ATGAA	2 cut(s)	86, 992
TspGWI	ACGGA	2 cut(s)	890, 1160
TspRI	CASTG	2 cut(s)	233, 876
Vha464I	CTTAAG	1 cut(s)	1154
VpaK11BI	GGWCC	1 cut(s)	231
VspI	ATTAAT	2 cut(s)	767, 806
XapI	RAATTY	2 cut(s)	188, 754
XmiI	GTMKAC	3 cut(s)	654, 986, 1194
XmnI	GAANNNNTTC	1 cut(s)	518
XspI	CTAG	1 cut(s)	821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.