MD01G1010900.v1.1

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
6047462 .. 6048736
1275 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1010900.v1.1.491

Sequence Viewer

Length: 1275 bp
ATGGTGAGGGACGACGACCTCTACGTCGCGGTGCCGAGCTTCTTCCGGTGTCCGATATCGCTCGACATCATGAAATCCCCTGTTAGCCTCTGCACCGGCGTCACCTACGACCGCTCCAGCATCCAGCGCTGGCTCGACGACGGCAACAACACCTGCCCCGCCACCATGCAACTCCTCCACACCAAAGACTTGCTCCCCAACCGCAACTTGCATCGCCTCATCCAGATCTGGTCTGACTCCTTCCGCCTCCCCCCACGCAACTCCACCTCCTTCTCGCCACCCTCTTCACCCTTCCAACCACCACTGCCCAAGGACCAGATCCGCCACCTAATCCACCGCTTGGACGCCTATACCGAACCATCTTCCTCCTTCGATTCCCTTTCCAAGATTGCCCAGTTCGCAAGAGAGTCCGACGACAACCGCAAAATCCTCGCCGAAAGAGATGGTTTCATCCAAGTCCTCGTCGAGTTTCTCGGTGGCAGCGGCAATGCCGAAGACAAAAACATCGGCGCCCTCGAACAAGTTGTGAGAATCCTTGATCTGGTGAAGGACAAAATACAAGACCGGGAGGAGCTGTCGAGATGGATGCTAAAAAAGAGCGGTCAGGATTGCTTGGCTTCTCTGCTTCTTATTGCACAACATGGAAGTGTGGATTCTCGAATCGCAACGGCTGGGGTTTTGGAATCAATATCGGTAAACGCGGAAGCGAAGATCCTGATAGCCGAGAAAGAAGGGCTTTTACCCCAGCTGCTGAAGTCCACGGCTCCGGAAAAGGATCCGACGGTCATTGAAGCGAGTCTCTCTTGCTTGATCGCCCTGTCGACCCCGAAGCGAGTGAAGGTTAGATTGGTCCATTTAGGAGCAGTGAAGCTGCTGTCCAAGTTGCTGTGGGATCCGAATTCCACGACGGCGACGGTGGAGGAGGCGTTGAAGTTGCTGGAAACGGTGTCGTCGGTGAAAGAGGGGCGGGGAAAGATATGCGAGGACGGCAAGTGCGTGTCGGGGATCGTGCAGAGGCTGCTGAAGGTGTCGAGTGCGGCGGCGGAGCACGCGGTGACGATACTATGGAGCGTGTGCTATTTGTTTAAGGAGAGGGCAGCGCAAGAGGCGGTGGGGAGGGCGAATGGGTTGACCAAGATATTGCTGCTGATGCAAAGCAATTGCTCGCCGGCTGTTCGGCAAATGTGTGCCGATTTGCTCAAGATTTTTCGTGTGAATTCGAAATCGGTTATTTCTTGTTATGATACTAAGACCACTCATATCATGCCCTTCTGA

Protein Analysis

425

Amino Acids

46.92

Weight (kDa)

8.55

Isoelectric Point (pI)

44.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 11 - 78 5.6e-18 U-box domain
ARM_PUB PF25598 106 - 421 8.2e-79 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09800 AT5G64660
fragaria_vesca FvH4_1g24000
malus_domestica MD01G1010900.v1.1
prunus_persica Prupe.6G159600_v2.0.a1
pyrus_communis pycom01g03990 pycom1353g00040
rosa_chinensis RchiOBHm_Chr2g0120131
rosa_laevigata RLG00000018524
rosa_multiflora Rmu_sc0016643.1_g000003
rosa_roxburghii Rroxscaffold_2G00123700
rosa_rugosa Rorug02G0227000
rosa_samantha Rh2AG283600 Rh2BG294900 Rh2CG272300 Rh2DG308600
rosa_wichuraiana Rw2G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 161
AasI GACNNNNNNGTC 1 cut(s) 23
Acc36I ACCTGC 1 cut(s) 161
AccB1I GGYRCC 2 cut(s) 31, 509
AccB7I CCANNNNNTGG 1 cut(s) 340
AccBSI CCGCTC 2 cut(s) 114, 600
AccI GTMKAC 1 cut(s) 821
AccII CGCG 3 cut(s) 29, 701, 1052
AccIII TCCGGA 1 cut(s) 766
AclWI GGATC 7 cut(s) 313, 706, 770, 783, 887, 900, 1013
AcsI RAATTY 2 cut(s) 898, 1216
AcuI CTGAAG 2 cut(s) 773, 1043
AcyI GRCGYC 3 cut(s) 99, 345, 510
AdeI CACNNNGTG 1 cut(s) 1054
AfeI AGCGCT 1 cut(s) 128
AfiI CCNNNNNNNGG 2 cut(s) 340, 541
AgsI TTSAA 2 cut(s) 791, 931
AjuI GAANNNNNNNTTGG 2 cut(s) 830, 862
AluBI AGCT 4 cut(s) 39, 574, 748, 871
AluI AGCT 4 cut(s) 39, 574, 748, 871
Alw21I GWGCWC 1 cut(s) 1050
Alw26I GTCTC 1 cut(s) 803
AlwI GGATC 7 cut(s) 313, 706, 770, 783, 887, 900, 1013
AlwNI CAGNNNCTG 2 cut(s) 751, 1018
Aor13HI TCCGGA 1 cut(s) 766
Aor51HI AGCGCT 1 cut(s) 128
ApeKI GCWGC 6 cut(s) 480, 748, 871, 1018, 1097, 1144
ApoI RAATTY 2 cut(s) 898, 1216
AspLEI GCGC 3 cut(s) 129, 512, 1102
AspS9I GGNCC 2 cut(s) 313, 850
AsuC2I CCSGG 1 cut(s) 566
AsuHPI GGTGA 6 cut(s) 16, 94, 279, 556, 967, 1066
AsuII TTCGAA 1 cut(s) 1220
AvaII GGWCC 2 cut(s) 313, 850
BamHI GGATCC 2 cut(s) 775, 892
BanI GGYRCC 2 cut(s) 31, 509
BarI GAAGNNNNNNTAC 2 cut(s) 723, 755
BbsI GAAGAC 1 cut(s) 501
Bbv12I GWGCWC 1 cut(s) 1050
BbvI GCAGC 6 cut(s) 492, 735, 858, 1005, 1109, 1131
BccI CCATC 3 cut(s) 367, 437, 576
BceAI ACGGC 5 cut(s) 157, 684, 777, 924, 1003
BcgI CGANNNNNNTGC 4 cut(s) 412, 446, 568, 602
BcnI CCSGG 1 cut(s) 566
BcoDI GTCTC 1 cut(s) 803
BfoI RGCGCY 2 cut(s) 130, 513
BfuAI ACCTGC 1 cut(s) 161
BglII AGATCT 1 cut(s) 225
BisI GCNGC 9 cut(s) 481, 484, 749, 872, 1019, 1038, 1041, 1098, 1145
BlsI GCNGC 9 cut(s) 482, 485, 750, 873, 1020, 1039, 1042, 1099, 1146
Bme1390I CCNGG 1 cut(s) 566
Bme18I GGWCC 2 cut(s) 313, 850
BmgT120I GGNCC 2 cut(s) 313, 850
BmiI GGNNCC 5 cut(s) 33, 511, 765, 777, 894
BmrFI CCNGG 1 cut(s) 566
BmrI ACTGGG 1 cut(s) 388
BmsI GCATC 4 cut(s) 129, 220, 576, 1140
BmuI ACTGGG 1 cut(s) 388
BpiI GAAGAC 1 cut(s) 501
BpmI CTGGAG 1 cut(s) 100
Bpu14I TTCGAA 1 cut(s) 1220
BpuEI CTTGAG 1 cut(s) 1184
BpuMI CCSGG 1 cut(s) 566
BsaHI GRCGYC 3 cut(s) 99, 345, 510
BsaJI CCNNGG 2 cut(s) 309, 759
BsaWI WCCGGW 2 cut(s) 45, 766
BsaXI ACNNNNNCTCC 8 cut(s) 98, 128, 251, 281, 560, 590, 911, 941
Bsc4I CCNNNNNNNGG 2 cut(s) 340, 541
Bse118I RCCGGY 2 cut(s) 95, 1168
Bse1I ACTGG 1 cut(s) 394
Bse3DI GCAATG 1 cut(s) 493
BseAI TCCGGA 1 cut(s) 766
BseDI CCNNGG 2 cut(s) 309, 759
BseGI GGATG 4 cut(s) 120, 219, 450, 591
BseLI CCNNNNNNNGG 2 cut(s) 340, 541
BseMI GCAATG 1 cut(s) 493
BseNI ACTGG 1 cut(s) 394
BseRI GAGGAG 3 cut(s) 164, 584, 935
BseXI GCAGC 6 cut(s) 492, 735, 858, 1005, 1109, 1131
BseYI CCCAGC 2 cut(s) 671, 744
BsgI GTGCAG 2 cut(s) 76, 1031
Bsh1236I CGCG 3 cut(s) 29, 701, 1052
Bsh1285I CGRYCG 1 cut(s) 112
BshNI GGYRCC 2 cut(s) 31, 509
BsiEI CGRYCG 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 1050
BsiSI CCGG 5 cut(s) 46, 96, 565, 767, 1169
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 2 cut(s) 340, 541
BsmAI GTCTC 1 cut(s) 803
BsmFI GGGAC 1 cut(s) 23
Bsp119I TTCGAA 1 cut(s) 1220
Bsp1286I GDGCHC 1 cut(s) 1050
Bsp13I TCCGGA 1 cut(s) 766
Bsp143I GATC 8 cut(s) 225, 318, 538, 711, 775, 810, 892, 1005
BspEI TCCGGA 1 cut(s) 766
BspFNI CGCG 3 cut(s) 29, 701, 1052
BspHI TCATGA 1 cut(s) 69
BspLI GGNNCC 5 cut(s) 33, 511, 765, 777, 894
BspMI ACCTGC 1 cut(s) 161
BspPI GGATC 7 cut(s) 313, 706, 770, 783, 887, 900, 1013
BspT104I TTCGAA 1 cut(s) 1220
BspT107I GGYRCC 2 cut(s) 31, 509
BsrBI CCGCTC 2 cut(s) 114, 600
BsrDI GCAATG 1 cut(s) 493
BsrFI RCCGGY 2 cut(s) 95, 1168
BsrI ACTGG 1 cut(s) 394
BssAI RCCGGY 2 cut(s) 95, 1168
BssECI CCNNGG 2 cut(s) 309, 759
BssMI GATC 8 cut(s) 225, 318, 538, 711, 775, 810, 892, 1005
BssNI GRCGYC 3 cut(s) 99, 345, 510
BssT1I CCWWGG 1 cut(s) 309
Bst4CI ACNGT 3 cut(s) 784, 916, 946
Bst6I CTCTTC 1 cut(s) 289
BstACI GRCGYC 3 cut(s) 99, 345, 510
BstAPI GCANNNNNTGC 1 cut(s) 1018
BstBI TTCGAA 1 cut(s) 1220
BstC8I GCNNGC 4 cut(s) 131, 1050, 1166, 1170
BstDEI CTNAG 1 cut(s) 1248
BstDSI CCRYGG 1 cut(s) 759
BstF5I GGATG 4 cut(s) 120, 219, 450, 591
BstFNI CGCG 3 cut(s) 29, 701, 1052
BstH2I RGCGCY 2 cut(s) 130, 513
BstHHI GCGC 3 cut(s) 129, 512, 1102
BstKTI GATC 8 cut(s) 228, 321, 541, 714, 778, 813, 895, 1008
BstMAI GTCTC 1 cut(s) 803
BstMBI GATC 8 cut(s) 225, 318, 538, 711, 775, 810, 892, 1005
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 7 cut(s) 126, 398, 987, 1018, 1049, 1106, 1150
BstSCI CCNGG 1 cut(s) 564
BstUI CGCG 3 cut(s) 29, 701, 1052
BstV1I GCAGC 6 cut(s) 492, 735, 858, 1005, 1109, 1131
BstV2I GAAGAC 1 cut(s) 501
BstX2I RGATCY 5 cut(s) 225, 318, 711, 775, 892
BstYI RGATCY 5 cut(s) 225, 318, 711, 775, 892
BtgI CCRYGG 1 cut(s) 759
BtgZI GCGATG 1 cut(s) 197
BtsCI GGATG 4 cut(s) 120, 219, 450, 591
BtsI GCAGTG 2 cut(s) 302, 870
BtsIMutI CAGTG 2 cut(s) 302, 870
BveI ACCTGC 1 cut(s) 161
Cac8I GCNNGC 4 cut(s) 131, 1050, 1166, 1170
CaiI CAGNNNCTG 2 cut(s) 751, 1018
CciI TCATGA 1 cut(s) 69
CfoI GCGC 3 cut(s) 129, 512, 1102
Cfr10I RCCGGY 2 cut(s) 95, 1168
Cfr13I GGNCC 2 cut(s) 313, 850
CseI GACGC 2 cut(s) 88, 353
CviAII CATG 4 cut(s) 70, 166, 641, 1264
DdeI CTNAG 1 cut(s) 1248
DinI GGCGCC 1 cut(s) 511
DpnI GATC 8 cut(s) 227, 320, 540, 713, 777, 812, 894, 1007
DpnII GATC 8 cut(s) 225, 318, 538, 711, 775, 810, 892, 1005
DraIII CACNNNGTG 1 cut(s) 1054
DrdI GACNNNNNNGTC 1 cut(s) 23
DseDI GACNNNNNNGTC 1 cut(s) 23
Eam1104I CTCTTC 1 cut(s) 289
EarI CTCTTC 1 cut(s) 289
EciI GGCGGA 3 cut(s) 233, 311, 1058
Eco130I CCWWGG 1 cut(s) 309
Eco32I GATATC 1 cut(s) 57
Eco47I GGWCC 2 cut(s) 313, 850
Eco47III AGCGCT 1 cut(s) 128
Eco57I CTGAAG 2 cut(s) 773, 1043
EcoRI GAATTC 2 cut(s) 898, 1216
EcoRV GATATC 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 309
EgeI GGCGCC 1 cut(s) 511
EheI GGCGCC 1 cut(s) 511
ErhI CCWWGG 1 cut(s) 309
FaeI CATG 4 cut(s) 73, 169, 644, 1267
FaiI YATR 9 cut(s) 71, 167, 351, 642, 979, 1066, 1242, 1260, 1265
FalI AAGNNNNNCTT 2 cut(s) 720, 752
FaqI GGGAC 1 cut(s) 23
FatI CATG 4 cut(s) 69, 165, 640, 1263
FauI CCCGC 2 cut(s) 166, 960
FblI GTMKAC 1 cut(s) 821
Fnu4HI GCNGC 9 cut(s) 481, 484, 749, 872, 1019, 1038, 1041, 1098, 1145
FokI GGATG 4 cut(s) 107, 206, 437, 598
Fsp4HI GCNGC 9 cut(s) 481, 484, 749, 872, 1019, 1038, 1041, 1098, 1145
GlaI GCGC 3 cut(s) 128, 511, 1101
GluI GCNGC 9 cut(s) 481, 484, 749, 872, 1019, 1038, 1041, 1098, 1145
GsaI CCCAGC 2 cut(s) 675, 748
GsuI CTGGAG 1 cut(s) 100
HaeII RGCGCY 2 cut(s) 130, 513
HapII CCGG 5 cut(s) 46, 96, 565, 767, 1169
HgaI GACGC 2 cut(s) 88, 353
HhaI GCGC 3 cut(s) 129, 512, 1102
Hin1I GRCGYC 3 cut(s) 99, 345, 510
Hin1II CATG 4 cut(s) 73, 169, 644, 1267
Hin6I GCGC 3 cut(s) 127, 510, 1100
HinP1I GCGC 3 cut(s) 127, 510, 1100
HincII GTYRAC 2 cut(s) 822, 1131
HindII GTYRAC 2 cut(s) 822, 1131
HinfI GANTC 8 cut(s) 236, 374, 407, 531, 653, 660, 683, 796
HpaII CCGG 5 cut(s) 46, 96, 565, 767, 1169
HphI GGTGA 6 cut(s) 16, 94, 279, 556, 967, 1066
Hpy166II GTNNAC 4 cut(s) 697, 759, 822, 1131
Hpy188I TCNGA 6 cut(s) 54, 235, 412, 780, 897, 1274
Hpy188III TCNNGA 8 cut(s) 70, 223, 579, 605, 657, 715, 767, 1201
Hpy8I GTNNAC 4 cut(s) 697, 759, 822, 1131
HpyAV CCTTC 8 cut(s) 250, 280, 301, 379, 541, 725, 832, 1018
HpyCH4III ACNGT 3 cut(s) 784, 916, 946
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 6 cut(s) 93, 169, 211, 635, 1012, 1153
HpyF10VI GCNNNNNNNGC 7 cut(s) 126, 398, 987, 1018, 1049, 1106, 1150
HpyF3I CTNAG 1 cut(s) 1248
HpySE526I ACGT 1 cut(s) 24
Hsp92I GRCGYC 3 cut(s) 99, 345, 510
Hsp92II CATG 4 cut(s) 73, 169, 644, 1267
HspAI GCGC 3 cut(s) 127, 510, 1100
KasI GGCGCC 1 cut(s) 509
Kpn2I TCCGGA 1 cut(s) 766
KroI GCCGGC 1 cut(s) 1168
KroNI GCCGGC 1 cut(s) 1170
Kzo9I GATC 8 cut(s) 225, 318, 538, 711, 775, 810, 892, 1005
LmnI GCTCC 7 cut(s) 119, 198, 571, 769, 860, 1045, 1068
Lsp1109I GCAGC 6 cut(s) 492, 735, 858, 1005, 1109, 1131
LweI GCATC 4 cut(s) 129, 220, 576, 1140
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 2 cut(s) 100, 1054
MalI GATC 8 cut(s) 227, 320, 540, 713, 777, 812, 894, 1007
MbiI CCGCTC 2 cut(s) 114, 600
MboI GATC 8 cut(s) 225, 318, 538, 711, 775, 810, 892, 1005
MboII GAAGA 5 cut(s) 34, 276, 354, 506, 721
MfeI CAATTG 1 cut(s) 1159
MflI RGATCY 5 cut(s) 225, 318, 711, 775, 892
MhlI GDGCHC 1 cut(s) 1050
MluCI AATT 3 cut(s) 898, 1159, 1216
Mly113I GGCGCC 1 cut(s) 510
MlyI GAGTC 3 cut(s) 230, 416, 805
MmeI TCCRAC 3 cut(s) 319, 435, 803
MroI TCCGGA 1 cut(s) 766
MroNI GCCGGC 1 cut(s) 1168
MseI TTAA 1 cut(s) 1086
MslI CAYNNNNRTG 1 cut(s) 645
MspA1I CMGCKG 2 cut(s) 483, 748
MspI CCGG 5 cut(s) 46, 96, 565, 767, 1169
MspR9I CCNGG 1 cut(s) 566
MunI CAATTG 1 cut(s) 1159
MvnI CGCG 3 cut(s) 29, 701, 1052
MwoI GCNNNNNNNGC 7 cut(s) 126, 398, 987, 1018, 1049, 1106, 1150
NaeI GCCGGC 1 cut(s) 1170
NarI GGCGCC 1 cut(s) 510
NciI CCSGG 1 cut(s) 566
NdeII GATC 8 cut(s) 225, 318, 538, 711, 775, 810, 892, 1005
NgoMIV GCCGGC 1 cut(s) 1168
NlaIII CATG 4 cut(s) 73, 169, 644, 1267
NlaIV GGNNCC 5 cut(s) 33, 511, 765, 777, 894
NmeAIII GCCGAG 2 cut(s) 60, 748
NmuCI GTSAC 2 cut(s) 100, 1054
NspV TTCGAA 1 cut(s) 1220
PagI TCATGA 1 cut(s) 69
PaqCI CACCTGC 1 cut(s) 161
PcsI WCGNNNNNNNCGW 4 cut(s) 21, 351, 513, 993
PdiI GCCGGC 1 cut(s) 1170
PfeI GAWTC 5 cut(s) 374, 531, 653, 660, 683
PflMI CCANNNNNTGG 1 cut(s) 340
PkrI GCNGC 9 cut(s) 482, 485, 750, 873, 1020, 1039, 1042, 1099, 1146
PleI GAGTC 3 cut(s) 230, 415, 804
PluTI GGCGCC 1 cut(s) 513
PpsI GAGTC 3 cut(s) 230, 415, 804
PspFI CCCAGC 2 cut(s) 671, 744
PspN4I GGNNCC 5 cut(s) 33, 511, 765, 777, 894
PspPI GGNCC 2 cut(s) 313, 850
PstNI CAGNNNCTG 2 cut(s) 751, 1018
PsuI RGATCY 5 cut(s) 225, 318, 711, 775, 892
PvuII CAGCTG 1 cut(s) 748
RseI CAYNNNNRTG 1 cut(s) 645
SalI GTCGAC 1 cut(s) 820
SaqAI TTAA 1 cut(s) 1086
SatI GCNGC 9 cut(s) 481, 484, 749, 872, 1019, 1038, 1041, 1098, 1145
Sau3AI GATC 8 cut(s) 225, 318, 538, 711, 775, 810, 892, 1005
Sau96I GGNCC 2 cut(s) 313, 850
SchI GAGTC 3 cut(s) 230, 416, 805
ScrFI CCNGG 1 cut(s) 566
SduI GDGCHC 1 cut(s) 1050
SfaNI GCATC 4 cut(s) 129, 220, 576, 1140
SfoI GGCGCC 1 cut(s) 511
SfuI TTCGAA 1 cut(s) 1220
SgrAI CRCCGGYG 1 cut(s) 95
SinI GGWCC 2 cut(s) 313, 850
SmiMI CAYNNNNRTG 1 cut(s) 645
SmlI CTYRAG 1 cut(s) 1199
SmoI CTYRAG 1 cut(s) 1199
Sse9I AATT 3 cut(s) 898, 1159, 1216
SspDI GGCGCC 1 cut(s) 509
StyD4I CCNGG 1 cut(s) 564
StyI CCWWGG 1 cut(s) 309
TaaI ACNGT 3 cut(s) 784, 916, 946
TaiI ACGT 1 cut(s) 27
TasI AATT 3 cut(s) 898, 1159, 1216
TauI GCSGC 3 cut(s) 486, 1040, 1043
TfiI GAWTC 5 cut(s) 374, 531, 653, 660, 683
Tru1I TTAA 1 cut(s) 1086
Tru9I TTAA 1 cut(s) 1086
TscAI CASTG 2 cut(s) 309, 870
TseFI GTSAC 2 cut(s) 100, 1054
TseI GCWGC 6 cut(s) 480, 748, 871, 1018, 1097, 1144
Tsp45I GTSAC 2 cut(s) 100, 1054
TspDTI ATGAA 2 cut(s) 86, 439
TspRI CASTG 2 cut(s) 309, 870
Van91I CCANNNNNTGG 1 cut(s) 340
VpaK11BI GGWCC 2 cut(s) 313, 850
XapI RAATTY 2 cut(s) 898, 1216
XmiI GTMKAC 1 cut(s) 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.