Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014228

Physical Location & Seq

Genomic Coordinates Forward (+)

22387308 .. 22389059

Gene Structure 1752 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0227000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGACGTTAGAAGCTGTGGTGTTCCAGCCAGACCCATTTAGCTGTGGAAATTGTCTGGAAGGAAGTAGATCTTGGGACCATGGCTTTGGTTTCGGAGGAGATGATGATCAACAAGAAAAAGGCTACGCTCAACATGATATTCTCAACAATGGTAATATTGTAGGGCAAGGCCTTATGGGGTACTGTTCACCGTCTCAGGTGAGAATCCAAAGTGTCAACACCGGCAATTCTTTCTCTAGCCCGATGGCCACCACAGGCCAGAGAAAGAGGCGGCGCACGAGAAACATCAAGAACAAGGAAGAGGTGGAGACTCAGAGGATCACCCACATTGCTGTTGAACGCAATCGGAGGAAGCTCATGAATGACTATCTGGCCGCACTGCGCTCTATGATGCCTGCTTCCTATGCCCAAAGGGGTGACCAAGCATCAATCATAGGAGGAGCCATAAATTTTGTGAAGGAGCTTGAACAACTTCTGCAATCTTTAGAAGCCAGTACAAAAACCAAACAATCACACTTGGATTTGGCCTCCATATTCTCCAACTTCTTTACCTTCCCTCAGTACTCGACCTGTTCGAATACTAACACCCACGGCCATGGCCATAGCGAGTACATGAACAACAACTTGGTGCATCCCCACGAGATAATGGGGGAGAAGCGGTCGGGGGCAATTGCAGATGTGGAAGTAACAATGGTAGAAAGTCATGCGAACATTAAAGTGCTTTTGAAAAGACACCCAAGACAGCTCTTAAAGATGGTGGTTGGGTTGCACTCTCTGCGTCTTATGATCCTTCACCTTAATGTCACAACTATGGATAGCATGATCCTCTACTCTTTCAGCGTCAAGGTTGAAGATAATTCTCAGTTGACCTCAATGAATGATATTGCAGCTGATGTGTATGAAATGGTGGGAAGGATTCAAGAAGAGGCCCAGTTTTTACTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0033612 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0055044 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

315

Amino Acids

35.37

Weight (kDa)

6.67

Isoelectric Point (pI)

52.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	105 - 156	2.9e-11	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09800 AT5G64660
fragaria_vesca	FvH4_1g24000
malus_domestica	MD01G1010900.v1.1
prunus_persica	Prupe.6G159600_v2.0.a1
pyrus_communis	pycom01g03990 pycom1353g00040
rosa_chinensis	RchiOBHm_Chr2g0120131
rosa_laevigata	RLG00000018524
rosa_multiflora	Rmu_sc0016643.1_g000003
rosa_roxburghii	Rroxscaffold_2G00123700
rosa_rugosa	Rorug02G0227000
rosa_samantha	Rh2AG283600 Rh2BG294900 Rh2CG272300 Rh2DG308600
rosa_wichuraiana	Rw2G022710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	271, 375, 658
AclWI	GGATC	3 cut(s)	326, 781, 817
AcoI	YGGCCR	4 cut(s)	246, 372, 592, 598
AcsI	RAATTY	1 cut(s)	448
AfaI	GTAC	4 cut(s)	182, 496, 563, 611
AgsI	TTSAA	6 cut(s)	338, 467, 727, 851, 920, 944
AjuI	GAANNNNNNNTTGG	4 cut(s)	55, 87, 608, 640
AluBI	AGCT	6 cut(s)	14, 42, 355, 463, 745, 890
AluI	AGCT	6 cut(s)	14, 42, 355, 463, 745, 890
Alw26I	GTCTC	2 cut(s)	198, 302
AlwI	GGATC	3 cut(s)	326, 781, 817
AoxI	GGCC	8 cut(s)	169, 246, 256, 372, 525, 592, 598, 927
ApeKI	GCWGC	1 cut(s)	887
ApoI	RAATTY	1 cut(s)	448
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
Asp700I	GAANNNNTTC	1 cut(s)	471
AspLEI	GCGC	2 cut(s)	276, 384
AspS9I	GGNCC	2 cut(s)	76, 928
AsuHPI	GGTGA	5 cut(s)	180, 211, 313, 428, 785
AsuII	TTCGAA	1 cut(s)	575
AvaII	GGWCC	1 cut(s)	76
BalI	TGGCCA	2 cut(s)	248, 600
BauI	CACGAG	2 cut(s)	277, 638
BbvI	GCAGC	1 cut(s)	899
BccI	CCATC	2 cut(s)	238, 748
BceAI	ACGGC	1 cut(s)	607
BclI	TGATCA	1 cut(s)	106
BcoDI	GTCTC	2 cut(s)	198, 302
BfaI	CTAG	1 cut(s)	237
BglII	AGATCT	1 cut(s)	68
BisI	GCNGC	3 cut(s)	272, 375, 888
BlsI	GCNGC	3 cut(s)	273, 376, 889
BmcAI	AGTACT	1 cut(s)	563
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	76, 928
BmiI	GGNNCC	2 cut(s)	77, 442
BmrI	ACTGGG	1 cut(s)	925
BmsI	GCATC	3 cut(s)	381, 434, 640
BmuI	ACTGGG	1 cut(s)	925
Bpu14I	TTCGAA	1 cut(s)	575
BsaBI	GATNNNNATC	1 cut(s)	105
BsaJI	CCNNGG	3 cut(s)	79, 589, 595
BsaXI	ACNNNNNCTCC	2 cut(s)	644, 674
Bse118I	RCCGGY	1 cut(s)	221
Bse1I	ACTGG	2 cut(s)	492, 931
Bse3DI	GCAATG	1 cut(s)	327
Bse8I	GATNNNNATC	1 cut(s)	105
BseDI	CCNNGG	3 cut(s)	79, 589, 595
BseGI	GGATG	1 cut(s)	631
BseJI	GATNNNNATC	1 cut(s)	105
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	4 cut(s)	209, 326, 572, 875
BseNI	ACTGG	2 cut(s)	492, 931
BseRI	GAGGAG	2 cut(s)	111, 453
BseXI	GCAGC	1 cut(s)	899
Bsh1285I	CGRYCG	1 cut(s)	662
BshFI	GGCC	8 cut(s)	171, 248, 258, 374, 527, 594, 600, 929
BsiEI	CGRYCG	1 cut(s)	662
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	89
BsmAI	GTCTC	2 cut(s)	198, 302
BsmBI	CGTCTC	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	8 cut(s)	171, 248, 258, 374, 527, 594, 600, 929
Bsp119I	TTCGAA	1 cut(s)	575
Bsp143I	GATC	5 cut(s)	68, 106, 318, 786, 822
Bsp19I	CCATGG	2 cut(s)	79, 595
BspACI	CCGC	3 cut(s)	271, 375, 658
BspANI	GGCC	8 cut(s)	171, 248, 258, 374, 527, 594, 600, 929
BspCNI	CTCAG	4 cut(s)	208, 325, 571, 874
BspHI	TCATGA	1 cut(s)	357
BspLI	GGNNCC	2 cut(s)	77, 442
BspPI	GGATC	3 cut(s)	326, 781, 817
BspT104I	TTCGAA	1 cut(s)	575
BsrDI	GCAATG	1 cut(s)	327
BsrFI	RCCGGY	1 cut(s)	221
BsrI	ACTGG	2 cut(s)	492, 931
BssAI	RCCGGY	1 cut(s)	221
BssECI	CCNNGG	3 cut(s)	79, 589, 595
BssMI	GATC	5 cut(s)	68, 106, 318, 786, 822
BssSI	CACGAG	2 cut(s)	277, 638
BssT1I	CCWWGG	2 cut(s)	79, 595
Bst2BI	CACGAG	2 cut(s)	277, 638
Bst4CI	ACNGT	2 cut(s)	185, 192
Bst6I	CTCTTC	2 cut(s)	294, 918
BstAPI	GCANNNNNTGC	1 cut(s)	775
BstBI	TTCGAA	1 cut(s)	575
BstC8I	GCNNGC	1 cut(s)	396
BstDEI	CTNAG	4 cut(s)	195, 312, 558, 861
BstDSI	CCRYGG	3 cut(s)	79, 589, 595
BstEII	GGTNACC	1 cut(s)	416
BstF5I	GGATG	1 cut(s)	631
BstHHI	GCGC	2 cut(s)	276, 384
BstKTI	GATC	5 cut(s)	71, 109, 321, 789, 825
BstMAI	GTCTC	2 cut(s)	198, 302
BstMBI	GATC	5 cut(s)	68, 106, 318, 786, 822
BstMCI	CGRYCG	1 cut(s)	662
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 775
BstPI	GGTNACC	1 cut(s)	416
BstV1I	GCAGC	1 cut(s)	899
BstX2I	RGATCY	1 cut(s)	68
BstXI	CCANNNNNNTGG	2 cut(s)	86, 596
BstYI	RGATCY	1 cut(s)	68
BsuRI	GGCC	8 cut(s)	171, 248, 258, 374, 527, 594, 600, 929
BtgI	CCRYGG	3 cut(s)	79, 589, 595
BtsCI	GGATG	1 cut(s)	631
BtsI	GCAGTG	1 cut(s)	377
BtsIMutI	CAGTG	1 cut(s)	377
Cac8I	GCNNGC	1 cut(s)	396
CciI	TCATGA	1 cut(s)	357
CfoI	GCGC	2 cut(s)	276, 384
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	2 cut(s)	76, 928
CseI	GACGC	2 cut(s)	767, 829
Csp6I	GTAC	4 cut(s)	181, 495, 562, 610
CviAII	CATG	7 cut(s)	80, 134, 358, 596, 613, 704, 820
CviQI	GTAC	4 cut(s)	181, 495, 562, 610
DdeI	CTNAG	4 cut(s)	195, 312, 558, 861
DpnI	GATC	5 cut(s)	70, 108, 320, 788, 824
DpnII	GATC	5 cut(s)	68, 106, 318, 786, 822
EaeI	YGGCCR	4 cut(s)	246, 372, 592, 598
Eam1104I	CTCTTC	2 cut(s)	294, 918
EarI	CTCTTC	2 cut(s)	294, 918
Eco130I	CCWWGG	2 cut(s)	79, 595
Eco147I	AGGCCT	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	76
Eco91I	GGTNACC	1 cut(s)	416
EcoO65I	GGTNACC	1 cut(s)	416
EcoT14I	CCWWGG	2 cut(s)	79, 595
ErhI	CCWWGG	2 cut(s)	79, 595
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	7 cut(s)	83, 137, 361, 599, 616, 707, 823
FalI	AAGNNNNNCTT	2 cut(s)	55, 87
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	7 cut(s)	79, 133, 357, 595, 612, 703, 819
FbaI	TGATCA	1 cut(s)	106
Fnu4HI	GCNGC	3 cut(s)	272, 375, 888
FokI	GGATG	1 cut(s)	618
Fsp4HI	GCNGC	3 cut(s)	272, 375, 888
FspBI	CTAG	1 cut(s)	237
GlaI	GCGC	2 cut(s)	275, 383
GluI	GCNGC	3 cut(s)	272, 375, 888
HaeIII	GGCC	8 cut(s)	171, 248, 258, 374, 527, 594, 600, 929
HapII	CCGG	1 cut(s)	222
HgaI	GACGC	2 cut(s)	767, 829
HhaI	GCGC	2 cut(s)	276, 384
Hin1II	CATG	7 cut(s)	83, 137, 361, 599, 616, 707, 823
Hin6I	GCGC	2 cut(s)	274, 382
HinP1I	GCGC	2 cut(s)	274, 382
HincII	GTYRAC	2 cut(s)	217, 867
HindII	GTYRAC	2 cut(s)	217, 867
HinfI	GANTC	3 cut(s)	204, 310, 916
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	5 cut(s)	180, 211, 313, 428, 785
Hpy166II	GTNNAC	3 cut(s)	188, 217, 867
Hpy188I	TCNGA	3 cut(s)	95, 315, 348
Hpy188III	TCNNGA	4 cut(s)	56, 289, 358, 920
Hpy8I	GTNNAC	3 cut(s)	188, 217, 867
HpyAV	CCTTC	5 cut(s)	53, 451, 562, 800, 906
HpyCH4III	ACNGT	2 cut(s)	185, 192
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	5 cut(s)	478, 631, 674, 769, 887
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 775
HpyF3I	CTNAG	4 cut(s)	195, 312, 558, 861
HpySE526I	ACGT	1 cut(s)	5
Hsp92II	CATG	7 cut(s)	83, 137, 361, 599, 616, 707, 823
HspAI	GCGC	2 cut(s)	274, 382
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	5 cut(s)	68, 106, 318, 786, 822
LmnI	GCTCC	2 cut(s)	440, 460
Lsp1109I	GCAGC	1 cut(s)	899
LweI	GCATC	3 cut(s)	381, 434, 640
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	3 cut(s)	416, 685, 802
MalI	GATC	5 cut(s)	70, 108, 320, 788, 824
MboI	GATC	5 cut(s)	68, 106, 318, 786, 822
MboII	GAAGA	3 cut(s)	311, 863, 935
MfeI	CAATTG	1 cut(s)	669
MflI	RGATCY	1 cut(s)	68
MlsI	TGGCCA	2 cut(s)	248, 600
MluCI	AATT	5 cut(s)	49, 226, 448, 669, 856
MluNI	TGGCCA	2 cut(s)	248, 600
MlyI	GAGTC	1 cut(s)	304
MmeI	TCCRAC	1 cut(s)	564
Mox20I	TGGCCA	2 cut(s)	248, 600
MroXI	GAANNNNTTC	1 cut(s)	471
MscI	TGGCCA	2 cut(s)	248, 600
MseI	TTAA	3 cut(s)	714, 749, 798
MslI	CAYNNNNRTG	4 cut(s)	594, 716, 798, 809
Msp20I	TGGCCA	2 cut(s)	248, 600
MspA1I	CMGCKG	1 cut(s)	890
MspI	CCGG	1 cut(s)	222
MunI	CAATTG	1 cut(s)	669
MwoI	GCNNNNNNNGC	2 cut(s)	404, 775
NcoI	CCATGG	2 cut(s)	79, 595
NdeII	GATC	5 cut(s)	68, 106, 318, 786, 822
NlaIII	CATG	7 cut(s)	83, 137, 361, 599, 616, 707, 823
NlaIV	GGNNCC	2 cut(s)	77, 442
NmuCI	GTSAC	2 cut(s)	416, 802
NspV	TTCGAA	1 cut(s)	575
PagI	TCATGA	1 cut(s)	357
PceI	AGGCCT	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	572
PdmI	GAANNNNTTC	1 cut(s)	471
PfeI	GAWTC	2 cut(s)	204, 916
PkrI	GCNGC	3 cut(s)	273, 376, 889
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
PspEI	GGTNACC	1 cut(s)	416
PspN4I	GGNNCC	2 cut(s)	77, 442
PspPI	GGNCC	2 cut(s)	76, 928
PsuI	RGATCY	1 cut(s)	68
PvuII	CAGCTG	1 cut(s)	890
RsaI	GTAC	4 cut(s)	182, 496, 563, 611
RsaNI	GTAC	4 cut(s)	181, 495, 562, 610
RseI	CAYNNNNRTG	4 cut(s)	594, 716, 798, 809
SaqAI	TTAA	3 cut(s)	714, 749, 798
SatI	GCNGC	3 cut(s)	272, 375, 888
Sau3AI	GATC	5 cut(s)	68, 106, 318, 786, 822
Sau96I	GGNCC	2 cut(s)	76, 928
ScaI	AGTACT	1 cut(s)	563
SchI	GAGTC	1 cut(s)	304
SfaNI	GCATC	3 cut(s)	381, 434, 640
SfuI	TTCGAA	1 cut(s)	575
SinI	GGWCC	1 cut(s)	76
SmiMI	CAYNNNNRTG	4 cut(s)	594, 716, 798, 809
Sse9I	AATT	5 cut(s)	49, 226, 448, 669, 856
SseBI	AGGCCT	1 cut(s)	171
SsiI	CCGC	3 cut(s)	271, 375, 658
SspI	AATATT	1 cut(s)	157
SspMI	CTAG	1 cut(s)	237
StuI	AGGCCT	1 cut(s)	171
StyI	CCWWGG	2 cut(s)	79, 595
TaaI	ACNGT	2 cut(s)	185, 192
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	2 cut(s)	566, 575
TasI	AATT	5 cut(s)	49, 226, 448, 669, 856
TatI	WGTACW	3 cut(s)	494, 561, 609
TauI	GCSGC	2 cut(s)	274, 377
TfiI	GAWTC	2 cut(s)	204, 916
Tru1I	TTAA	3 cut(s)	714, 749, 798
Tru9I	TTAA	3 cut(s)	714, 749, 798
TscAI	CASTG	1 cut(s)	384
TseFI	GTSAC	2 cut(s)	416, 802
TseI	GCWGC	1 cut(s)	887
Tsp45I	GTSAC	2 cut(s)	416, 802
TspDTI	ATGAA	4 cut(s)	374, 629, 890, 915
TspRI	CASTG	1 cut(s)	384
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	1 cut(s)	448
XmnI	GAANNNNTTC	1 cut(s)	471
XspI	CTAG	1 cut(s)	237
ZrmI	AGTACT	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.