Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014228

Physical Location & Seq

Genomic Coordinates Reverse (-)

25841913 .. 25843555

Gene Structure 1643 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G64660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGAGGAAAGATGATCTCTGCATCACTGTTCCTACCTTCTTCCGATGTCCTATATCTCTCGACGTTATGAAATCTCCGGTGAGTCTTTGCACCGGCGTTACCTACGATCGAGCTAGTATCCAACGGTGGCTTGACGGCGGGAATAACACTTGTCCGGCGACGATGCAGATTCTTCAGAATAAAGATTTCATACCGAATCGGACTCTTCAACGTCTTATCGAGATTTGGTCTGATTCTGTTCGTCGTCGAACTTGTGTTGAATCGGCGGAATTAGCTGCTCCGACGAGAGACGAGATCGCCGATGCGATCGATAGAGTGAAGATCGAGAAAGAAGAAAGAGATGATCGCGAGGTTTTGTCGAAGATTGTTCGATTCGGGAGAGAATCTGATGATAACAGAGGATTTCTCGCCGGAAAAGATGATTTCGTGAAACTTCTCGTGGATCTGATTAATCAGGTGGATTTCGAAACCACCTCCGCCGCGAAATCTCTGGTTGTTCAAGAAGCGGTGAAGATTCTGAGTACGATTCGAAGCAAAGTCTCAGATCGGAGACGGTTTTCGAATCTGATTTTAACCAACGGTCGAGATCGGTTATCGGTGATCGTCTACTTGTTTAAAACCGGGAATGTCGAATTGAAAATTGATTGCGCCGGTTTACTTGAGTTCATCGCCGTCGACGCTGAATCAAAGCTGTTAATCGCCGAGAGAGATGGATTAATCACGGAGCTAATGAAATCGATTAGTAAAGATTCTGATTTAAGTTTAATCGAATCGAGTTTATCGTGCTTGATCGCGATTAGCTCACCGAAACGTGTGAAACTCAATCTCCTCCGAGAGAAACTCATCGGAGATGTTACGAAACTGTTATCAGATTCAACGTCGTCGTTGAGCGTTTCGGTGACGGAGAAATGCTTGAAGCTTCTGGAGATTTTAGCATCTACAAAGGAAGGGAGATCGGAAATTTGCGGCGGAGATGGCGAGTGTTTGAAGACGGTGGTTAAGAAGCTGATGAAAGTGTCAACGGCGGCGACGGAGCACGCCGTGACGGTGCTGTGGAGTGTTTCTTATCTATTCAAAGAAGATAAAGCTTTGGAAGCTGTTACAAGTGTTAACGGAGTTACGAAAATTCTGTTACTGTTACAGAGCAATTGCTCTCCCGCCGTTAGACGTATGTTAACGGATCTTCTTAAGGTCTTCAAGGTGAATTCAAGATCTTGCCTTTCGGCTTACGACACCAAAACGACACATATCATGCCGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0033612 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0055044 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

420

Amino Acids

46.77

Weight (kDa)

8.5

Isoelectric Point (pI)

44.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	10 - 78	3e-17	U-box domain
ARM_PUB	PF25598	98 - 417	7.5e-104	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09800 AT5G64660
fragaria_vesca	FvH4_1g24000
malus_domestica	MD01G1010900.v1.1
prunus_persica	Prupe.6G159600_v2.0.a1
pyrus_communis	pycom01g03990 pycom1353g00040
rosa_chinensis	RchiOBHm_Chr2g0120131
rosa_laevigata	RLG00000018524
rosa_multiflora	Rmu_sc0016643.1_g000003
rosa_roxburghii	Rroxscaffold_2G00123700
rosa_rugosa	Rorug02G0227000
rosa_samantha	Rh2AG283600 Rh2BG294900 Rh2CG272300 Rh2DG308600
rosa_wichuraiana	Rw2G022710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	606, 675
AccII	CGCG	3 cut(s)	348, 482, 794
AciI	CCGC	9 cut(s)	138, 266, 477, 480, 506, 966, 969, 1025, 1158
AclWI	GGATC	2 cut(s)	450, 1188
AcsI	RAATTY	3 cut(s)	960, 1125, 1204
AcuI	CTGAAG	1 cut(s)	158
AdeI	CACNNNGTG	1 cut(s)	1042
AfaI	GTAC	1 cut(s)	523
AflII	CTTAAG	1 cut(s)	1187
AflIII	ACRYGT	1 cut(s)	811
AluBI	AGCT	9 cut(s)	113, 275, 691, 727, 801, 919, 1006, 1088, 1097
AluI	AGCT	9 cut(s)	113, 275, 691, 727, 801, 919, 1006, 1088, 1097
Alw21I	GWGCWC	1 cut(s)	1038
Alw26I	GTCTC	3 cut(s)	282, 544, 544
AlwI	GGATC	2 cut(s)	450, 1188
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	3 cut(s)	960, 1125, 1204
AseI	ATTAAT	2 cut(s)	450, 716
AspLEI	GCGC	1 cut(s)	650
AsuC2I	CCSGG	1 cut(s)	622
AsuHPI	GGTGA	6 cut(s)	91, 520, 610, 795, 910, 1213
AsuII	TTCGAA	3 cut(s)	465, 529, 560
BauI	CACGAG	1 cut(s)	437
BbsI	GAAGAC	2 cut(s)	995, 1186
Bbv12I	GWGCWC	1 cut(s)	1038
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	2 cut(s)	704, 968
BceAI	ACGGC	6 cut(s)	151, 656, 1025, 1038, 1145, 1240
BciVI	GTATCC	1 cut(s)	128
BcnI	CCSGG	1 cut(s)	622
BcoDI	GTCTC	3 cut(s)	282, 544, 544
BfaI	CTAG	1 cut(s)	114
BfrI	CTTAAG	1 cut(s)	1187
BfuI	GTATCC	1 cut(s)	128
BglII	AGATCT	1 cut(s)	1211
BisI	GCNGC	4 cut(s)	276, 480, 967, 1026
BlsI	GCNGC	4 cut(s)	277, 481, 968, 1027
Bme1390I	CCNGG	1 cut(s)	622
BmrFI	CCNGG	1 cut(s)	622
BmsI	GCATC	4 cut(s)	30, 153, 292, 944
BpiI	GAAGAC	2 cut(s)	995, 1186
BplI	GAGNNNNNCTC	4 cut(s)	390, 422, 825, 857
BpmI	CTGGAG	1 cut(s)	944
Bpu14I	TTCGAA	3 cut(s)	465, 529, 560
BpuEI	CTTGAG	1 cut(s)	680
BpuMI	CCSGG	1 cut(s)	622
Bsa29I	ATCGAT	2 cut(s)	309, 737
BsaWI	WCCGGW	1 cut(s)	76
BsaXI	ACNNNNNCTCC	2 cut(s)	810, 840
Bse118I	RCCGGY	2 cut(s)	92, 650
BseCI	ATCGAT	2 cut(s)	309, 737
BseMII	CTCAG	2 cut(s)	509, 555
BseRI	GAGGAG	1 cut(s)	818
BseXI	GCAGC	1 cut(s)	262
Bsh1236I	CGCG	3 cut(s)	348, 482, 794
Bsh1285I	CGRYCG	3 cut(s)	109, 309, 583
BshVI	ATCGAT	2 cut(s)	309, 737
BsiEI	CGRYCG	3 cut(s)	109, 309, 583
BsiHKAI	GWGCWC	1 cut(s)	1038
BsiSI	CCGG	6 cut(s)	77, 93, 155, 411, 621, 651
BsmAI	GTCTC	3 cut(s)	282, 544, 544
BsmBI	CGTCTC	2 cut(s)	282, 544
Bsp119I	TTCGAA	3 cut(s)	465, 529, 560
Bsp1286I	GDGCHC	1 cut(s)	1038
Bsp68I	TCGCGA	2 cut(s)	348, 794
BspACI	CCGC	9 cut(s)	138, 266, 477, 480, 506, 966, 969, 1025, 1158
BspCNI	CTCAG	2 cut(s)	510, 554
BspDI	ATCGAT	2 cut(s)	309, 737
BspFNI	CGCG	3 cut(s)	348, 482, 794
BspPI	GGATC	2 cut(s)	450, 1188
BspT104I	TTCGAA	3 cut(s)	465, 529, 560
BspTI	CTTAAG	1 cut(s)	1187
BsrFI	RCCGGY	2 cut(s)	92, 650
BssAI	RCCGGY	2 cut(s)	92, 650
BssSI	CACGAG	1 cut(s)	437
Bst2BI	CACGAG	1 cut(s)	437
Bst4CI	ACNGT	8 cut(s)	28, 126, 555, 581, 864, 994, 1048, 1137
Bst6I	CTCTTC	1 cut(s)	210
BstAFI	CTTAAG	1 cut(s)	1187
BstBI	TTCGAA	3 cut(s)	465, 529, 560
BstC8I	GCNNGC	1 cut(s)	1038
BstDEI	CTNAG	2 cut(s)	518, 541
BstFNI	CGCG	3 cut(s)	348, 482, 794
BstHHI	GCGC	1 cut(s)	650
BstMAI	GTCTC	3 cut(s)	282, 544, 544
BstMCI	CGRYCG	3 cut(s)	109, 309, 583
BstMWI	GCNNNNNNNGC	4 cut(s)	272, 677, 975, 1094
BstSCI	CCNGG	1 cut(s)	620
BstUI	CGCG	3 cut(s)	348, 482, 794
BstV1I	GCAGC	1 cut(s)	262
BstV2I	GAAGAC	2 cut(s)	995, 1186
BstX2I	RGATCY	3 cut(s)	442, 1180, 1211
BstYI	RGATCY	3 cut(s)	442, 1180, 1211
Bsu15I	ATCGAT	2 cut(s)	309, 737
BsuI	GTATCC	1 cut(s)	128
BsuTUI	ATCGAT	2 cut(s)	309, 737
BtgZI	GCGATG	1 cut(s)	652
BtsIMutI	CAGTG	1 cut(s)	24
BtuMI	TCGCGA	2 cut(s)	348, 794
Cac8I	GCNNGC	1 cut(s)	1038
CfoI	GCGC	1 cut(s)	650
Cfr10I	RCCGGY	2 cut(s)	92, 650
ClaI	ATCGAT	2 cut(s)	309, 737
CseI	GACGC	1 cut(s)	686
Csp6I	GTAC	1 cut(s)	522
CviAII	CATG	1 cut(s)	1252
CviQI	GTAC	1 cut(s)	522
DdeI	CTNAG	2 cut(s)	518, 541
DraI	TTTAAA	1 cut(s)	616
DraIII	CACNNNGTG	1 cut(s)	1042
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
EciI	GGCGGA	3 cut(s)	281, 466, 984
Eco57I	CTGAAG	1 cut(s)	158
EcoRI	GAATTC	1 cut(s)	1204
Esp3I	CGTCTC	2 cut(s)	282, 544
FaeI	CATG	1 cut(s)	1255
FaiI	YATR	6 cut(s)	53, 68, 191, 1172, 1248, 1253
FatI	CATG	1 cut(s)	1251
FauI	CCCGC	2 cut(s)	131, 1165
FblI	GTMKAC	2 cut(s)	606, 675
Fnu4HI	GCNGC	4 cut(s)	276, 480, 967, 1026
Fsp4HI	GCNGC	4 cut(s)	276, 480, 967, 1026
FspBI	CTAG	1 cut(s)	114
GlaI	GCGC	1 cut(s)	649
GluI	GCNGC	4 cut(s)	276, 480, 967, 1026
GsuI	CTGGAG	1 cut(s)	944
HapII	CCGG	6 cut(s)	77, 93, 155, 411, 621, 651
HgaI	GACGC	1 cut(s)	686
HhaI	GCGC	1 cut(s)	650
Hin1II	CATG	1 cut(s)	1255
Hin6I	GCGC	1 cut(s)	648
HinP1I	GCGC	1 cut(s)	648
HincII	GTYRAC	4 cut(s)	676, 1020, 1111, 1176
HindII	GTYRAC	4 cut(s)	676, 1020, 1111, 1176
HindIII	AAGCTT	2 cut(s)	917, 1086
HpaI	GTTAAC	2 cut(s)	1111, 1176
HpaII	CCGG	6 cut(s)	77, 93, 155, 411, 621, 651
HphI	GGTGA	6 cut(s)	91, 520, 610, 795, 910, 1213
Hpy166II	GTNNAC	6 cut(s)	607, 656, 676, 1020, 1111, 1176
Hpy8I	GTNNAC	6 cut(s)	607, 656, 676, 1020, 1111, 1176
HpyAV	CCTTC	2 cut(s)	46, 941
HpyCH4III	ACNGT	8 cut(s)	28, 126, 555, 581, 864, 994, 1048, 1137
HpyCH4IV	ACGT	5 cut(s)	63, 211, 811, 878, 1168
HpyCH4V	TGCA	3 cut(s)	21, 90, 166
HpyF10VI	GCNNNNNNNGC	4 cut(s)	272, 677, 975, 1094
HpyF3I	CTNAG	2 cut(s)	518, 541
HpySE526I	ACGT	5 cut(s)	63, 211, 811, 878, 1168
Hsp92II	CATG	1 cut(s)	1255
HspAI	GCGC	1 cut(s)	648
KspAI	GTTAAC	2 cut(s)	1111, 1176
LmnI	GCTCC	3 cut(s)	283, 724, 1033
LpnPI	CCDG	9 cut(s)	90, 106, 168, 424, 440, 476, 634, 664, 908
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	4 cut(s)	30, 153, 292, 944
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	5 cut(s)	63, 211, 811, 878, 1168
MaeIII	GTNAC	8 cut(s)	97, 853, 898, 1042, 1099, 1117, 1131, 1137
MfeI	CAATTG	1 cut(s)	1147
MflI	RGATCY	3 cut(s)	442, 1180, 1211
MhlI	GDGCHC	1 cut(s)	1038
MluCI	AATT	7 cut(s)	269, 632, 639, 960, 1125, 1147, 1204
MlyI	GAGTC	2 cut(s)	91, 196
MmeI	TCCRAC	2 cut(s)	145, 305
MnlI	CCTC	4 cut(s)	343, 392, 484, 839
MspCI	CTTAAG	1 cut(s)	1187
MspI	CCGG	6 cut(s)	77, 93, 155, 411, 621, 651
MspR9I	CCNGG	1 cut(s)	622
MunI	CAATTG	1 cut(s)	1147
MvnI	CGCG	3 cut(s)	348, 482, 794
MwoI	GCNNNNNNNGC	4 cut(s)	272, 677, 975, 1094
NciI	CCSGG	1 cut(s)	622
NlaIII	CATG	1 cut(s)	1255
NmeAIII	GCCGAG	1 cut(s)	727
NmuCI	GTSAC	2 cut(s)	898, 1042
NruI	TCGCGA	2 cut(s)	348, 794
NspV	TTCGAA	3 cut(s)	465, 529, 560
PcsI	WCGNNNNNNNCGW	2 cut(s)	297, 779
PkrI	GCNGC	4 cut(s)	277, 481, 968, 1027
Ple19I	CGATCG	2 cut(s)	109, 309
PleI	GAGTC	2 cut(s)	90, 196
PpsI	GAGTC	2 cut(s)	90, 196
PshBI	ATTAAT	2 cut(s)	450, 716
PsuI	RGATCY	3 cut(s)	442, 1180, 1211
PvuI	CGATCG	2 cut(s)	109, 309
RruI	TCGCGA	2 cut(s)	348, 794
RsaI	GTAC	1 cut(s)	523
RsaNI	GTAC	1 cut(s)	522
SalI	GTCGAC	1 cut(s)	674
SatI	GCNGC	4 cut(s)	276, 480, 967, 1026
SchI	GAGTC	2 cut(s)	91, 196
ScrFI	CCNGG	1 cut(s)	622
SduI	GDGCHC	1 cut(s)	1038
SfaNI	GCATC	4 cut(s)	30, 153, 292, 944
SfuI	TTCGAA	3 cut(s)	465, 529, 560
SgrAI	CRCCGGYG	1 cut(s)	92
SgrDI	CGTCGACG	1 cut(s)	674
SmlI	CTYRAG	2 cut(s)	659, 1187
SmoI	CTYRAG	2 cut(s)	659, 1187
Sse9I	AATT	7 cut(s)	269, 632, 639, 960, 1125, 1147, 1204
SsiI	CCGC	9 cut(s)	138, 266, 477, 480, 506, 966, 969, 1025, 1158
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	620
TaaI	ACNGT	8 cut(s)	28, 126, 555, 581, 864, 994, 1048, 1137
TaiI	ACGT	5 cut(s)	66, 214, 814, 881, 1171
TasI	AATT	7 cut(s)	269, 632, 639, 960, 1125, 1147, 1204
TauI	GCSGC	3 cut(s)	482, 969, 1028
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	2 cut(s)	898, 1042
TseI	GCWGC	1 cut(s)	275
Tsp45I	GTSAC	2 cut(s)	898, 1042
TspDTI	ATGAA	5 cut(s)	83, 178, 655, 746, 1025
TspGWI	ACGGA	5 cut(s)	737, 917, 1046, 1128, 1193
TspRI	CASTG	1 cut(s)	31
Vha464I	CTTAAG	1 cut(s)	1187
VspI	ATTAAT	2 cut(s)	450, 716
XapI	RAATTY	3 cut(s)	960, 1125, 1204
XmiI	GTMKAC	2 cut(s)	606, 675
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.