Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004432

Physical Location & Seq

Genomic Coordinates Reverse (-)

3062651 .. 3065889

Gene Structure 3239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G09850.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGATTTGGATGATTTCCGATCGGTTATGGATAACGCAGGTGTTGATGTTTGGACATTTATCGATACGGCGATTCTTGTTGCGTCTCTTGACTATGGTCAAGAACTGAAACGTCGGAGAGATAACATCGTCGAGCGTCTCTACGCTACGTCGATGGCTAACAAGTGTAGAAACTGCGATTTTGGCGGCGGTGGTAACGTTACGGAGGCGGCGATTGGTAGGGTTAATAATGGGAGGGTTCACGAGGAGACGGAGGAGGAAGATGAAGAAGGAGTAACAGCAGCAGCAGAAGAAGAAGTTAGAGAGAAATCTGTTAATGTTGAAGACGATGACGATTTCGATCCCTTTGCTGGTTTGTTTGATGATGAGCAGAAGAGTATTGTTGAAATCAAGGAGAAACTTGAAGATCCTGATCTGTCTGAAGAATCTTTGGTTGAGTTGCTTCAGAATCTGGAAGATATGGATATAACATTCCAAGCTCTTCAGGAAACTGATATTGGGAGGCATGTGAATCGAGTTCGGAAGCATCCTTCGAACAATGTTCGAAGATTAGCTAAACAGCTTGTCAAAAAATGGAAGGAAACAGTAGATGAATGGGTCAAATTTAACCAGCCTGGTGATCTTGAACCTCCAAGTTTGATAGCCGATGAGGATTCACCGGTGCAGAAAGCTCTTCATAATGGTAGTCGCCAACAGGTCCCTGATTTCGGATATTCACCGGTTCCTCAGAATGGGTATTCCAGTTCAAGCAAGAACAGTAACATTACTGAGCCAGAAAGAAAACCAAGACCTGTTGCTCCTCAACCTAGGAGAGAATCTCCTTCTCCAGCAAAACCTTCTCGCCCTTCTCCTTCTCAACAAACCATTCCGAGGGACAAAGAGCATAAAGAAGTTGATTTCGACACGGCCAGGAAAAGGCTACAACAAAACTACAGACAAGCCGAGAATGCAAAAAAGCAAAGGACTATACAGGTGATGGACATTCATGACATTCCTAAACCTAAGAAAGGTGGATTTTTCCCAAGAAAAGGCGGGAGTTCTCAAGGTGGTAGACACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006354 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0018130 GO:0019438 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0070449 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med26

Protein Analysis

353

Amino Acids

40.06

Weight (kDa)

5.16

Isoelectric Point (pI)

65.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med26	PF08711	146 - 196	2.9e-18	TFIIS helical bundle-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09850 AT5G09850 AT5G09850 AT5G09850 AT5G09850
fragaria_vesca	FvH4_1g23670 FvH4_1g23670 FvH4_1g23670 FvH4_1g23670
malus_domestica	MD01G1024900.v1.1 MD15G1319400.v1.1
prunus_persica	Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1
pyrus_communis	pycom01g05280 pycom15g29740
rosa_chinensis	RchiOBHm_Chr2g0119271
rosa_laevigata	RLG00000018461
rosa_multiflora	Rmu_co8400383.1_g000001 Rmu_sc0002788.1_g000002 Rmu_ssc0000264.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124360
rosa_rugosa	Rorug02G0221400 Rorug02G0221400
rosa_samantha	Rh2AG279500 Rh2BG290200 Rh2DG285500 Rh2DG304500
rosa_wichuraiana	Rw2G022230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	29
Acc36I	ACCTGC	1 cut(s)	29
AccI	GTMKAC	1 cut(s)	1051
AciI	CCGC	4 cut(s)	186, 189, 209, 1032
AclI	AACGTT	1 cut(s)	198
AclWI	GGATC	2 cut(s)	335, 401
AcoI	YGGCCR	1 cut(s)	906
AcsI	RAATTY	1 cut(s)	602
AcuI	CTGAAG	3 cut(s)	428, 441, 467
AfiI	CCNNNNNNNGG	7 cut(s)	350, 707, 731, 870, 915, 1007, 1028
AgeI	ACCGGT	2 cut(s)	658, 718
AgsI	TTSAA	5 cut(s)	323, 386, 404, 626, 747
AjnI	CCWGG	2 cut(s)	613, 908
AjuI	GAANNNNNNNTTGG	2 cut(s)	480, 512
AluBI	AGCT	4 cut(s)	479, 554, 562, 671
AluI	AGCT	4 cut(s)	479, 554, 562, 671
Alw26I	GTCTC	3 cut(s)	90, 143, 242
AlwI	GGATC	2 cut(s)	335, 401
AlwNI	CAGNNNCTG	1 cut(s)	451
AoxI	GGCC	1 cut(s)	906
ApeKI	GCWGC	2 cut(s)	281, 284
ApoI	RAATTY	1 cut(s)	602
AsiGI	ACCGGT	2 cut(s)	658, 718
AspA2I	CCTAGG	1 cut(s)	806
AspS9I	GGNCC	1 cut(s)	697
AsuHPI	GGTGA	4 cut(s)	629, 648, 708, 985
AsuII	TTCGAA	2 cut(s)	533, 544
AvaII	GGWCC	1 cut(s)	697
AvrII	CCTAGG	1 cut(s)	806
BauI	CACGAG	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	330
BbvI	GCAGC	2 cut(s)	293, 296
BccI	CCATC	2 cut(s)	148, 970
BceAI	ACGGC	2 cut(s)	84, 921
BcgI	CGANNNNNNTGC	4 cut(s)	329, 363, 494, 528
BciT130I	CCWGG	2 cut(s)	615, 910
BcoDI	GTCTC	3 cut(s)	90, 143, 242
BfaI	CTAG	1 cut(s)	807
BfmI	CTRYAG	1 cut(s)	931
BfuAI	ACCTGC	1 cut(s)	29
BisI	GCNGC	4 cut(s)	187, 210, 282, 285
BlnI	CCTAGG	1 cut(s)	806
BlsI	GCNGC	4 cut(s)	188, 211, 283, 286
Bme1390I	CCNGG	2 cut(s)	615, 910
Bme18I	GGWCC	1 cut(s)	697
BmgT120I	GGNCC	1 cut(s)	697
BmiI	GGNNCC	2 cut(s)	699, 723
BmrFI	CCNGG	2 cut(s)	615, 910
BmsI	GCATC	1 cut(s)	535
BoxI	GACNNNNGTC	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	330
BplI	GAGNNNNNCTC	2 cut(s)	802, 834
BpmI	CTGGAG	1 cut(s)	810
Bpu14I	TTCGAA	2 cut(s)	533, 544
BpuEI	CTTGAG	1 cut(s)	1026
Bsa29I	ATCGAT	1 cut(s)	63
BsaBI	GATNNNNATC	2 cut(s)	339, 411
BsaJI	CCNNGG	2 cut(s)	806, 869
BsaWI	WCCGGW	2 cut(s)	658, 718
Bsc4I	CCNNNNNNNGG	7 cut(s)	350, 707, 731, 870, 915, 1007, 1028
Bse118I	RCCGGY	2 cut(s)	658, 718
Bse1I	ACTGG	2 cut(s)	741, 1061
Bse8I	GATNNNNATC	2 cut(s)	339, 411
BseBI	CCWGG	2 cut(s)	615, 910
BseCI	ATCGAT	1 cut(s)	63
BseDI	CCNNGG	2 cut(s)	806, 869
BseGI	GGATG	2 cut(s)	16, 526
BseJI	GATNNNNATC	2 cut(s)	339, 411
BseLI	CCNNNNNNNGG	7 cut(s)	350, 707, 731, 870, 915, 1007, 1028
BseMII	CTCAG	2 cut(s)	740, 759
BseNI	ACTGG	2 cut(s)	741, 1061
BseRI	GAGGAG	3 cut(s)	260, 269, 789
BseXI	GCAGC	2 cut(s)	293, 296
BsgI	GTGCAG	1 cut(s)	683
Bsh1285I	CGRYCG	1 cut(s)	23
BshFI	GGCC	1 cut(s)	908
BshTI	ACCGGT	2 cut(s)	658, 718
BshVI	ATCGAT	1 cut(s)	63
BsiEI	CGRYCG	1 cut(s)	23
BsiSI	CCGG	2 cut(s)	659, 719
BslFI	GGGAC	2 cut(s)	683, 887
BslI	CCNNNNNNNGG	7 cut(s)	350, 707, 731, 870, 915, 1007, 1028
BsmAI	GTCTC	3 cut(s)	90, 143, 242
BsmBI	CGTCTC	3 cut(s)	90, 143, 242
BsmFI	GGGAC	2 cut(s)	683, 887
BsmI	GAATGC	1 cut(s)	952
BsnI	GGCC	1 cut(s)	908
Bsp119I	TTCGAA	2 cut(s)	533, 544
Bsp143I	GATC	5 cut(s)	20, 340, 406, 412, 619
BspACI	CCGC	4 cut(s)	186, 189, 209, 1032
BspANI	GGCC	1 cut(s)	908
BspCNI	CTCAG	2 cut(s)	739, 760
BspDI	ATCGAT	1 cut(s)	63
BspHI	TCATGA	1 cut(s)	985
BspLI	GGNNCC	2 cut(s)	699, 723
BspMI	ACCTGC	1 cut(s)	29
BspPI	GGATC	2 cut(s)	335, 401
BspQI	GCTCTTC	2 cut(s)	486, 678
BspT104I	TTCGAA	2 cut(s)	533, 544
BsrFI	RCCGGY	2 cut(s)	658, 718
BsrI	ACTGG	2 cut(s)	741, 1061
BssAI	RCCGGY	2 cut(s)	658, 718
BssECI	CCNNGG	2 cut(s)	806, 869
BssMI	GATC	5 cut(s)	20, 340, 406, 412, 619
BssSI	CACGAG	1 cut(s)	242
BssT1I	CCWWGG	1 cut(s)	806
Bst2BI	CACGAG	1 cut(s)	242
Bst2UI	CCWGG	2 cut(s)	615, 910
Bst4CI	ACNGT	2 cut(s)	586, 758
Bst6I	CTCTTC	3 cut(s)	368, 486, 678
BstBI	TTCGAA	2 cut(s)	533, 544
BstDEI	CTNAG	3 cut(s)	726, 768, 1002
BstENI	CCTNNNNNAGG	1 cut(s)	1005
BstF5I	GGATG	2 cut(s)	16, 526
BstKTI	GATC	5 cut(s)	23, 343, 409, 415, 622
BstMAI	GTCTC	3 cut(s)	90, 143, 242
BstMBI	GATC	5 cut(s)	20, 340, 406, 412, 619
BstMCI	CGRYCG	1 cut(s)	23
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 947
BstNI	CCWGG	2 cut(s)	615, 910
BstNSI	RCATGY	1 cut(s)	509
BstPAI	GACNNNNGTC	1 cut(s)	96
BstSCI	CCNGG	2 cut(s)	613, 908
BstSFI	CTRYAG	1 cut(s)	931
BstV1I	GCAGC	2 cut(s)	293, 296
BstV2I	GAAGAC	1 cut(s)	330
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
Bsu15I	ATCGAT	1 cut(s)	63
BsuRI	GGCC	1 cut(s)	908
BsuTUI	ATCGAT	1 cut(s)	63
BtsCI	GGATG	2 cut(s)	16, 526
BtsIMutI	CAGTG	1 cut(s)	1054
BveI	ACCTGC	1 cut(s)	29
CaiI	CAGNNNCTG	1 cut(s)	451
CciI	TCATGA	1 cut(s)	985
Cfr10I	RCCGGY	2 cut(s)	658, 718
Cfr13I	GGNCC	1 cut(s)	697
ClaI	ATCGAT	1 cut(s)	63
CseI	GACGC	2 cut(s)	72, 125
CspAI	ACCGGT	2 cut(s)	658, 718
CviAII	CATG	2 cut(s)	506, 986
DdeI	CTNAG	3 cut(s)	726, 768, 1002
DpnI	GATC	5 cut(s)	22, 342, 408, 414, 621
DpnII	GATC	5 cut(s)	20, 340, 406, 412, 619
EaeI	YGGCCR	1 cut(s)	906
Eam1104I	CTCTTC	3 cut(s)	368, 486, 678
EarI	CTCTTC	3 cut(s)	368, 486, 678
Eco130I	CCWWGG	1 cut(s)	806
Eco47I	GGWCC	1 cut(s)	697
Eco57I	CTGAAG	3 cut(s)	428, 441, 467
EcoNI	CCTNNNNNAGG	1 cut(s)	1005
EcoO109I	RGGNCCY	1 cut(s)	697
EcoRII	CCWGG	2 cut(s)	613, 908
EcoT14I	CCWWGG	1 cut(s)	806
ErhI	CCWWGG	1 cut(s)	806
Esp3I	CGTCTC	3 cut(s)	90, 143, 242
FaeI	CATG	2 cut(s)	509, 989
FaiI	YATR	9 cut(s)	29, 96, 461, 467, 507, 678, 885, 968, 987
FaqI	GGGAC	2 cut(s)	683, 887
FatI	CATG	2 cut(s)	505, 985
FauI	CCCGC	1 cut(s)	1025
FblI	GTMKAC	1 cut(s)	1051
Fnu4HI	GCNGC	4 cut(s)	187, 210, 282, 285
FokI	GGATG	2 cut(s)	23, 513
Fsp4HI	GCNGC	4 cut(s)	187, 210, 282, 285
FspBI	CTAG	1 cut(s)	807
GluI	GCNGC	4 cut(s)	187, 210, 282, 285
GsuI	CTGGAG	1 cut(s)	810
HaeIII	GGCC	1 cut(s)	908
HapII	CCGG	2 cut(s)	659, 719
HgaI	GACGC	2 cut(s)	72, 125
Hin1II	CATG	2 cut(s)	509, 989
HinfI	GANTC	6 cut(s)	73, 425, 448, 511, 653, 815
HpaII	CCGG	2 cut(s)	659, 719
HphI	GGTGA	4 cut(s)	629, 648, 708, 985
Hpy166II	GTNNAC	2 cut(s)	241, 1052
Hpy188I	TCNGA	8 cut(s)	20, 117, 421, 447, 522, 710, 729, 870
Hpy188III	TCNNGA	8 cut(s)	89, 101, 242, 410, 452, 485, 623, 986
Hpy8I	GTNNAC	2 cut(s)	241, 1052
Hpy99I	CGWCG	3 cut(s)	117, 134, 154
HpyAV	CCTTC	7 cut(s)	263, 540, 571, 831, 846, 855, 861
HpyCH4III	ACNGT	2 cut(s)	586, 758
HpyCH4IV	ACGT	3 cut(s)	112, 149, 198
HpyCH4V	TGCA	2 cut(s)	664, 950
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 947
HpyF3I	CTNAG	3 cut(s)	726, 768, 1002
HpySE526I	ACGT	3 cut(s)	112, 149, 198
Hsp92II	CATG	2 cut(s)	509, 989
Kzo9I	GATC	5 cut(s)	20, 340, 406, 412, 619
LguI	GCTCTTC	2 cut(s)	486, 678
LmnI	GCTCC	1 cut(s)	802
Lsp1109I	GCAGC	2 cut(s)	293, 296
LweI	GCATC	1 cut(s)	535
MaeI	CTAG	1 cut(s)	807
MaeII	ACGT	3 cut(s)	112, 149, 198
MaeIII	GTNAC	4 cut(s)	194, 199, 274, 758
MalI	GATC	5 cut(s)	22, 342, 408, 414, 621
MboI	GATC	5 cut(s)	20, 340, 406, 412, 619
MflI	RGATCY	1 cut(s)	406
MluCI	AATT	1 cut(s)	602
MmeI	TCCRAC	1 cut(s)	95
MseI	TTAA	3 cut(s)	225, 315, 606
MspI	CCGG	2 cut(s)	659, 719
MspR9I	CCNGG	2 cut(s)	615, 910
Mva1269I	GAATGC	1 cut(s)	952
MvaI	CCWGG	2 cut(s)	615, 910
MwoI	GCNNNNNNNGC	2 cut(s)	183, 947
NdeII	GATC	5 cut(s)	20, 340, 406, 412, 619
NlaIII	CATG	2 cut(s)	509, 989
NlaIV	GGNNCC	2 cut(s)	699, 723
NmeAIII	GCCGAG	1 cut(s)	967
NspI	RCATGY	1 cut(s)	509
NspV	TTCGAA	2 cut(s)	533, 544
PagI	TCATGA	1 cut(s)	985
PaqCI	CACCTGC	1 cut(s)	29
PciSI	GCTCTTC	2 cut(s)	486, 678
PcsI	WCGNNNNNNNCGW	1 cut(s)	209
PctI	GAATGC	1 cut(s)	952
PfeI	GAWTC	6 cut(s)	73, 425, 448, 511, 653, 815
PinAI	ACCGGT	2 cut(s)	658, 718
PkrI	GCNGC	4 cut(s)	188, 211, 283, 286
Ple19I	CGATCG	1 cut(s)	23
PpuMI	RGGWCCY	1 cut(s)	697
PshAI	GACNNNNGTC	1 cut(s)	96
Psp1406I	AACGTT	1 cut(s)	198
Psp5II	RGGWCCY	1 cut(s)	697
Psp6I	CCWGG	2 cut(s)	613, 908
PspGI	CCWGG	2 cut(s)	613, 908
PspN4I	GGNNCC	2 cut(s)	699, 723
PspPI	GGNCC	1 cut(s)	697
PspPPI	RGGWCCY	1 cut(s)	697
PstNI	CAGNNNCTG	1 cut(s)	451
PsuI	RGATCY	1 cut(s)	406
PvuI	CGATCG	1 cut(s)	23
SapI	GCTCTTC	2 cut(s)	486, 678
SaqAI	TTAA	3 cut(s)	225, 315, 606
SatI	GCNGC	4 cut(s)	187, 210, 282, 285
Sau3AI	GATC	5 cut(s)	20, 340, 406, 412, 619
Sau96I	GGNCC	1 cut(s)	697
ScrFI	CCNGG	2 cut(s)	615, 910
SfaNI	GCATC	1 cut(s)	535
SfcI	CTRYAG	1 cut(s)	931
SfuI	TTCGAA	2 cut(s)	533, 544
SgrAI	CRCCGGYG	1 cut(s)	658
SinI	GGWCC	1 cut(s)	697
SmlI	CTYRAG	1 cut(s)	1041
SmoI	CTYRAG	1 cut(s)	1041
Sse9I	AATT	1 cut(s)	602
SsiI	CCGC	4 cut(s)	186, 189, 209, 1032
SspMI	CTAG	1 cut(s)	807
StyD4I	CCNGG	2 cut(s)	613, 908
StyI	CCWWGG	1 cut(s)	806
TaaI	ACNGT	2 cut(s)	586, 758
TaiI	ACGT	3 cut(s)	115, 152, 201
TaqI	TCGA	8 cut(s)	63, 132, 152, 339, 514, 533, 544, 900
TasI	AATT	1 cut(s)	602
TauI	GCSGC	2 cut(s)	189, 212
TfiI	GAWTC	6 cut(s)	73, 425, 448, 511, 653, 815
Tru1I	TTAA	3 cut(s)	225, 315, 606
Tru9I	TTAA	3 cut(s)	225, 315, 606
TscAI	CASTG	1 cut(s)	1061
TseI	GCWGC	2 cut(s)	281, 284
TspDTI	ATGAA	4 cut(s)	279, 606, 665, 974
TspGWI	ACGGA	2 cut(s)	218, 266
TspRI	CASTG	1 cut(s)	1061
VpaK11BI	GGWCC	1 cut(s)	697
XagI	CCTNNNNNAGG	1 cut(s)	1005
XapI	RAATTY	1 cut(s)	602
XceI	RCATGY	1 cut(s)	509
XmaJI	CCTAGG	1 cut(s)	806
XmiI	GTMKAC	1 cut(s)	1051
XspI	CTAG	1 cut(s)	807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.