Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004432

Physical Location & Seq

Genomic Coordinates Reverse (-)

32888717 .. 32893033

Gene Structure 4317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG285500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGATTACGACGACTTGAGGACGATTGTGCACACCTCAGGGGTGGACGTGTTCACGTTCATCGACGCGGCGATCGCGGTGGCTGCGGTGGATGAGGGCAGCGAGCTCAGGCGCCGGAGAGACGGTATCGTGGAGCGTCTCTACGGCGCCACGTGTGCCCCGCCGCTGCCGCCGCCGCGGTGCCAGAACTGCGACGGAGATGGGATGAACGCGAACCAGCAGCCCAAAGGAGTTTCGCCGGCGACGCCGCAGTCGGTGGATAACAGAGACGAGGAGGATGAGGAGGAGGAGGAGGAGTTGGATCCCTGCGCTGGATTGTTCGATGATGAGCCCAAGAAGATTCTTGATATCAAGAAGCTGCTTGAGGATCCTGATCAGTCCGAGGATTCTCTGGTTGAATTGCTTCAAAGCCTAGTTGACATGGATATATCATTCCAAGACCTCAAGGATACTGATATTGGGAGGCAAGTGAGTCAATTACGCAAGCAACATCAAGGCGAGGTTGTTCGGAAATTGGCGAAGCAACTTGTCAGGAAATGGAAAGGTATTGTGGATGAATGGGTGAAGTTACATGGAGAAGAGCCAACTAATTCAGTCATGGTTGACGGAGACTCACCACAGCAGAAAATTCACCAGAATGGTCATCACCAGGTGCCTGATTTTGGTTACTCCCCAAATCCTCATAGTGAGTGCAGAATCGGATTCCAAACTTCAACTTCATCTTTTTGCGAAATATTACTTGTTTTTACTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006354 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0018130 GO:0019438 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0070449 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med26

Protein Analysis

251

Amino Acids

28.14

Weight (kDa)

4.54

Isoelectric Point (pI)

52.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med26	PF08711	133 - 184	1.2e-12	TFIIS helical bundle-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09850 AT5G09850 AT5G09850 AT5G09850 AT5G09850
fragaria_vesca	FvH4_1g23670 FvH4_1g23670 FvH4_1g23670 FvH4_1g23670
malus_domestica	MD01G1024900.v1.1 MD15G1319400.v1.1
prunus_persica	Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1
pyrus_communis	pycom01g05280 pycom15g29740
rosa_chinensis	RchiOBHm_Chr2g0119271
rosa_laevigata	RLG00000018461
rosa_multiflora	Rmu_co8400383.1_g000001 Rmu_sc0002788.1_g000002 Rmu_ssc0000264.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124360
rosa_rugosa	Rorug02G0221400 Rorug02G0221400
rosa_samantha	Rh2AG279500 Rh2BG290200 Rh2DG285500 Rh2DG304500
rosa_wichuraiana	Rw2G022230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	250
AccB1I	GGYRCC	4 cut(s)	111, 146, 180, 652
AccII	CGCG	4 cut(s)	68, 77, 178, 212
AclWI	GGATC	4 cut(s)	296, 309, 362, 375
AcsI	RAATTY	1 cut(s)	627
AcvI	CACGTG	1 cut(s)	153
AcyI	GRCGYC	3 cut(s)	112, 147, 245
AdeI	CACNNNGTG	1 cut(s)	652
AfiI	CCNNNNNNNGG	2 cut(s)	311, 662
AflIII	ACRYGT	2 cut(s)	48, 152
AgsI	TTSAA	3 cut(s)	398, 407, 714
AjiI	CACGTC	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	648
AluBI	AGCT	2 cut(s)	106, 358
AluI	AGCT	2 cut(s)	106, 358
Alw21I	GWGCWC	2 cut(s)	33, 108
Alw26I	GTCTC	4 cut(s)	114, 143, 261, 603
Alw44I	GTGCAC	1 cut(s)	29
AlwI	GGATC	4 cut(s)	296, 309, 362, 375
ApaLI	GTGCAC	1 cut(s)	29
ApeKI	GCWGC	5 cut(s)	83, 99, 166, 220, 358
ApoI	RAATTY	1 cut(s)	627
AsiSI	GCGATCGC	1 cut(s)	75
Asp700I	GAANNNNTTC	1 cut(s)	402
AspLEI	GCGC	3 cut(s)	114, 149, 311
AsuHPI	GGTGA	4 cut(s)	574, 606, 623, 638
AxyI	CCTNAGG	1 cut(s)	37
BaeGI	GKGCMC	2 cut(s)	33, 160
BamHI	GGATCC	2 cut(s)	301, 367
BanI	GGYRCC	4 cut(s)	111, 146, 180, 652
BanII	GRGCYC	2 cut(s)	108, 333
BbrPI	CACGTG	1 cut(s)	153
Bbv12I	GWGCWC	2 cut(s)	33, 108
BbvI	GCAGC	5 cut(s)	70, 111, 153, 232, 345
BccI	CCATC	1 cut(s)	194
BceAI	ACGGC	1 cut(s)	160
BciT130I	CCWGG	1 cut(s)	650
BciVI	GTATCC	1 cut(s)	442
BclI	TGATCA	1 cut(s)	373
BcoDI	GTCTC	4 cut(s)	114, 143, 261, 603
BfaI	CTAG	1 cut(s)	413
BfoI	RGCGCY	2 cut(s)	115, 150
BfuI	GTATCC	1 cut(s)	442
Bme1390I	CCNGG	1 cut(s)	650
BmgBI	CACGTC	1 cut(s)	49
BmiI	GGNNCC	6 cut(s)	113, 148, 182, 303, 369, 654
BmrFI	CCNGG	1 cut(s)	650
Bpu10I	CCTNAGC	1 cut(s)	107
BpuEI	CTTGAG	3 cut(s)	37, 383, 428
BsaAI	YACGTR	1 cut(s)	153
BsaBI	GATNNNNATC	1 cut(s)	372
BsaHI	GRCGYC	3 cut(s)	112, 147, 245
BsaJI	CCNNGG	2 cut(s)	176, 381
BsaXI	ACNNNNNCTCC	4 cut(s)	109, 139, 281, 311
Bsc4I	CCNNNNNNNGG	2 cut(s)	311, 662
Bse118I	RCCGGY	1 cut(s)	238
Bse21I	CCTNAGG	1 cut(s)	37
Bse8I	GATNNNNATC	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	650
BseDI	CCNNGG	2 cut(s)	176, 381
BseGI	GGATG	4 cut(s)	97, 210, 283, 559
BseJI	GATNNNNATC	1 cut(s)	372
BseLI	CCNNNNNNNGG	2 cut(s)	311, 662
BseMII	CTCAG	2 cut(s)	51, 121
BseRI	GAGGAG	6 cut(s)	287, 296, 299, 302, 305, 308
BseSI	GKGCMC	2 cut(s)	33, 160
BseXI	GCAGC	5 cut(s)	70, 111, 153, 232, 345
BsgI	GTGCAG	1 cut(s)	712
Bsh1236I	CGCG	4 cut(s)	68, 77, 178, 212
Bsh1285I	CGRYCG	1 cut(s)	75
BshNI	GGYRCC	4 cut(s)	111, 146, 180, 652
BsiEI	CGRYCG	1 cut(s)	75
BsiHKAI	GWGCWC	2 cut(s)	33, 108
BsiSI	CCGG	2 cut(s)	115, 239
BslI	CCNNNNNNNGG	2 cut(s)	311, 662
BsmAI	GTCTC	4 cut(s)	114, 143, 261, 603
BsmBI	CGTCTC	3 cut(s)	114, 143, 261
Bsp1286I	GDGCHC	4 cut(s)	33, 108, 160, 333
Bsp143I	GATC	4 cut(s)	72, 301, 367, 373
BspCNI	CTCAG	2 cut(s)	50, 120
BspFNI	CGCG	4 cut(s)	68, 77, 178, 212
BspLI	GGNNCC	6 cut(s)	113, 148, 182, 303, 369, 654
BspPI	GGATC	4 cut(s)	296, 309, 362, 375
BspQI	GCTCTTC	1 cut(s)	573
BspT107I	GGYRCC	4 cut(s)	111, 146, 180, 652
BsrFI	RCCGGY	1 cut(s)	238
BssAI	RCCGGY	1 cut(s)	238
BssECI	CCNNGG	2 cut(s)	176, 381
BssMI	GATC	4 cut(s)	72, 301, 367, 373
BssNI	GRCGYC	3 cut(s)	112, 147, 245
Bst2UI	CCWGG	1 cut(s)	650
Bst4CI	ACNGT	1 cut(s)	125
Bst6I	CTCTTC	1 cut(s)	573
BstACI	GRCGYC	3 cut(s)	112, 147, 245
BstBAI	YACGTR	1 cut(s)	153
BstC8I	GCNNGC	3 cut(s)	104, 240, 485
BstDEI	CTNAG	2 cut(s)	37, 107
BstDSI	CCRYGG	1 cut(s)	176
BstF5I	GGATG	4 cut(s)	97, 210, 283, 559
BstFNI	CGCG	4 cut(s)	68, 77, 178, 212
BstH2I	RGCGCY	2 cut(s)	115, 150
BstHHI	GCGC	3 cut(s)	114, 149, 311
BstKTI	GATC	4 cut(s)	75, 304, 370, 376
BstMAI	GTCTC	4 cut(s)	114, 143, 261, 603
BstMBI	GATC	4 cut(s)	72, 301, 367, 373
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	8 cut(s)	74, 83, 155, 169, 172, 175, 189, 244
BstNI	CCWGG	1 cut(s)	650
BstSCI	CCNGG	1 cut(s)	648
BstSLI	GKGCMC	2 cut(s)	33, 160
BstUI	CGCG	4 cut(s)	68, 77, 178, 212
BstV1I	GCAGC	5 cut(s)	70, 111, 153, 232, 345
BstX2I	RGATCY	2 cut(s)	301, 367
BstYI	RGATCY	2 cut(s)	301, 367
Bsu36I	CCTNAGG	1 cut(s)	37
BsuI	GTATCC	1 cut(s)	442
BtgI	CCRYGG	1 cut(s)	176
BtrI	CACGTC	1 cut(s)	49
BtsCI	GGATG	4 cut(s)	97, 210, 283, 559
Cac8I	GCNNGC	3 cut(s)	104, 240, 485
CfoI	GCGC	3 cut(s)	114, 149, 311
Cfr10I	RCCGGY	1 cut(s)	238
Cfr42I	CCGCGG	1 cut(s)	179
CseI	GACGC	3 cut(s)	74, 125, 253
CsiI	ACCWGGT	1 cut(s)	648
CviAII	CATG	3 cut(s)	421, 572, 598
CviJI	RGCY	7 cut(s)	83, 106, 223, 331, 358, 411, 583
CviKI_1	RGCY	7 cut(s)	83, 106, 223, 331, 358, 411, 583
DdeI	CTNAG	2 cut(s)	37, 107
DinI	GGCGCC	2 cut(s)	113, 148
DpnI	GATC	4 cut(s)	74, 303, 369, 375
DpnII	GATC	4 cut(s)	72, 301, 367, 373
DraIII	CACNNNGTG	1 cut(s)	652
DrdI	GACNNNNNNGTC	1 cut(s)	250
DseDI	GACNNNNNNGTC	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	573
EarI	CTCTTC	1 cut(s)	573
Ecl136II	GAGCTC	1 cut(s)	106
Eco24I	GRGCYC	2 cut(s)	108, 333
Eco32I	GATATC	1 cut(s)	349
Eco53kI	GAGCTC	1 cut(s)	106
Eco72I	CACGTG	1 cut(s)	153
Eco81I	CCTNAGG	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	648
EcoRV	GATATC	1 cut(s)	349
EcoT38I	GRGCYC	2 cut(s)	108, 333
EgeI	GGCGCC	2 cut(s)	113, 148
EheI	GGCGCC	2 cut(s)	113, 148
Esp3I	CGTCTC	3 cut(s)	114, 143, 261
FaeI	CATG	3 cut(s)	424, 575, 601
FaiI	YATR	5 cut(s)	422, 428, 573, 599, 684
FatI	CATG	3 cut(s)	420, 571, 597
FauI	CCCGC	1 cut(s)	168
FbaI	TGATCA	1 cut(s)	373
FokI	GGATG	4 cut(s)	104, 217, 290, 566
FriOI	GRGCYC	2 cut(s)	108, 333
FspBI	CTAG	1 cut(s)	413
GlaI	GCGC	3 cut(s)	113, 148, 310
HaeII	RGCGCY	2 cut(s)	115, 150
HapII	CCGG	2 cut(s)	115, 239
HgaI	GACGC	3 cut(s)	74, 125, 253
HhaI	GCGC	3 cut(s)	114, 149, 311
Hin1I	GRCGYC	3 cut(s)	112, 147, 245
Hin1II	CATG	3 cut(s)	424, 575, 601
Hin6I	GCGC	3 cut(s)	112, 147, 309
HinP1I	GCGC	3 cut(s)	112, 147, 309
HincII	GTYRAC	2 cut(s)	418, 604
HindII	GTYRAC	2 cut(s)	418, 604
HinfI	GANTC	6 cut(s)	340, 386, 472, 611, 696, 702
HpaII	CCGG	2 cut(s)	115, 239
HphI	GGTGA	4 cut(s)	574, 606, 623, 638
Hpy166II	GTNNAC	5 cut(s)	31, 46, 54, 418, 604
Hpy188I	TCNGA	3 cut(s)	382, 510, 701
Hpy188III	TCNNGA	4 cut(s)	344, 352, 371, 532
Hpy8I	GTNNAC	5 cut(s)	31, 46, 54, 418, 604
Hpy99I	CGWCG	4 cut(s)	14, 68, 197, 247
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4IV	ACGT	3 cut(s)	48, 56, 152
HpyCH4V	TGCA	2 cut(s)	31, 693
HpyF10VI	GCNNNNNNNGC	8 cut(s)	74, 83, 155, 169, 172, 175, 189, 244
HpyF3I	CTNAG	2 cut(s)	37, 107
HpySE526I	ACGT	3 cut(s)	48, 56, 152
Hsp92I	GRCGYC	3 cut(s)	112, 147, 245
Hsp92II	CATG	3 cut(s)	424, 575, 601
HspAI	GCGC	3 cut(s)	112, 147, 309
KasI	GGCGCC	2 cut(s)	111, 146
KroI	GCCGGC	1 cut(s)	238
KroNI	GCCGGC	1 cut(s)	240
Ksp22I	TGATCA	1 cut(s)	373
KspI	CCGCGG	1 cut(s)	179
Kzo9I	GATC	4 cut(s)	72, 301, 367, 373
LguI	GCTCTTC	1 cut(s)	573
LmnI	GCTCC	1 cut(s)	133
Lsp1109I	GCAGC	5 cut(s)	70, 111, 153, 232, 345
MabI	ACCWGGT	1 cut(s)	648
MaeI	CTAG	1 cut(s)	413
MaeII	ACGT	3 cut(s)	48, 56, 152
MaeIII	GTNAC	2 cut(s)	567, 665
MalI	GATC	4 cut(s)	74, 303, 369, 375
MboI	GATC	4 cut(s)	72, 301, 367, 373
MboII	GAAGA	2 cut(s)	349, 590
MflI	RGATCY	2 cut(s)	301, 367
MhlI	GDGCHC	4 cut(s)	33, 108, 160, 333
MluCI	AATT	6 cut(s)	398, 476, 512, 589, 627, 751
Mly113I	GGCGCC	2 cut(s)	112, 147
MlyI	GAGTC	2 cut(s)	481, 605
MmeI	TCCRAC	1 cut(s)	279
MreI	CGCCGGCG	1 cut(s)	238
MroNI	GCCGGC	1 cut(s)	238
MroXI	GAANNNNTTC	1 cut(s)	402
MslI	CAYNNNNRTG	1 cut(s)	636
MspA1I	CMGCKG	2 cut(s)	166, 178
MspI	CCGG	2 cut(s)	115, 239
MspR9I	CCNGG	1 cut(s)	650
MvaI	CCWGG	1 cut(s)	650
MvnI	CGCG	4 cut(s)	68, 77, 178, 212
MwoI	GCNNNNNNNGC	8 cut(s)	74, 83, 155, 169, 172, 175, 189, 244
NaeI	GCCGGC	1 cut(s)	240
NarI	GGCGCC	2 cut(s)	112, 147
NdeII	GATC	4 cut(s)	72, 301, 367, 373
NgoMIV	GCCGGC	1 cut(s)	238
NlaIII	CATG	3 cut(s)	424, 575, 601
NlaIV	GGNNCC	6 cut(s)	113, 148, 182, 303, 369, 654
PciSI	GCTCTTC	1 cut(s)	573
PdiI	GCCGGC	1 cut(s)	240
PdmI	GAANNNNTTC	1 cut(s)	402
PfeI	GAWTC	4 cut(s)	340, 386, 696, 702
Ple19I	CGATCG	1 cut(s)	75
PleI	GAGTC	2 cut(s)	480, 605
PluTI	GGCGCC	2 cut(s)	115, 150
PmaCI	CACGTG	1 cut(s)	153
PmlI	CACGTG	1 cut(s)	153
PpsI	GAGTC	2 cut(s)	480, 605
Ppu21I	YACGTR	1 cut(s)	153
Psp124BI	GAGCTC	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	648
PspCI	CACGTG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	648
PspN4I	GGNNCC	6 cut(s)	113, 148, 182, 303, 369, 654
PsuI	RGATCY	2 cut(s)	301, 367
PvuI	CGATCG	1 cut(s)	75
RgaI	GCGATCGC	1 cut(s)	75
RseI	CAYNNNNRTG	1 cut(s)	636
SacI	GAGCTC	1 cut(s)	108
SacII	CCGCGG	1 cut(s)	179
SapI	GCTCTTC	1 cut(s)	573
Sau3AI	GATC	4 cut(s)	72, 301, 367, 373
SchI	GAGTC	2 cut(s)	481, 605
ScrFI	CCNGG	1 cut(s)	650
SduI	GDGCHC	4 cut(s)	33, 108, 160, 333
SexAI	ACCWGGT	1 cut(s)	648
SfaAI	GCGATCGC	1 cut(s)	75
SfoI	GGCGCC	2 cut(s)	113, 148
Sfr303I	CCGCGG	1 cut(s)	179
SgfI	GCGATCGC	1 cut(s)	75
SgrAI	CRCCGGYG	1 cut(s)	238
SgrBI	CCGCGG	1 cut(s)	179
SmiMI	CAYNNNNRTG	1 cut(s)	636
SmlI	CTYRAG	3 cut(s)	16, 362, 443
SmoI	CTYRAG	3 cut(s)	16, 362, 443
Sse9I	AATT	6 cut(s)	398, 476, 512, 589, 627, 751
SspDI	GGCGCC	2 cut(s)	111, 146
SspI	AATATT	1 cut(s)	735
SspMI	CTAG	1 cut(s)	413
SstI	GAGCTC	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	648
TaaI	ACNGT	1 cut(s)	125
TaiI	ACGT	3 cut(s)	51, 59, 155
TaqI	TCGA	2 cut(s)	63, 321
TasI	AATT	6 cut(s)	398, 476, 512, 589, 627, 751
TauI	GCSGC	6 cut(s)	71, 166, 172, 175, 178, 250
TfiI	GAWTC	4 cut(s)	340, 386, 696, 702
TseI	GCWGC	5 cut(s)	83, 99, 166, 220, 358
TspDTI	ATGAA	4 cut(s)	49, 221, 570, 708
TspGWI	ACGGA	2 cut(s)	210, 621
VneI	GTGCAC	1 cut(s)	29
XapI	RAATTY	1 cut(s)	627
XmnI	GAANNNNTTC	1 cut(s)	402
XspI	CTAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.