Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004432

Physical Location & Seq

Genomic Coordinates Forward (+)

58635938 .. 58639533

Gene Structure 3596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00124360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGATTACGACGACTTGAGGACGATTGTGCACACCTCAGGGGTGGACGTGTTCACGTTCATCGACGCGGCGATCGCGGTGGCTGCGGTGGATGAGGGCAGCGAGCTCAGGCGCCGGAGAGACGGTATCGTGGAGCGTCTCTACGGCGCCACGTGTGCTCCTCCTCCGCCGCCGCGGTGCCTGAACTGCGACGGAGATGGGATGAACGCGAACCAGCAGCCCAAAGGAGTTTCGCCGGCGACGCCGCAGTCGGTGGATAACAGAGACGAGGAGGATGAGGAGGAGGAAGAGGAGTTGGATCCCTGCGCTGGATTGTTCGATGATGAGCCCAAGAAGATTCTTGATATCAAGAAGCAGCTTGAGGATCCTGATCAGTCTGAGGATTCTCTGGTTGAATTGCTTCAAAGCCTAGTTGACATGGATATATCATTCCAAGACCTCAAGGATACTGATATTGGGAGGCAAGTGAGTCAATTACGCAAGCAACATCAAGGCGAGGTTGTTCGGAAATTGGCGAAGCAACTTGTCAGGAAATGGAAAGGTATTGTGGATGAATGGGTGAAGTTACATGGACAAGAGCCAACTAATTCAGTCATGGTTGACGGAGACTCACCACAGCAGAAACTTCACCAGAATGGTCATCACCAGGTTCCTGATTTTGGTTACTCCCCAAATCCTCATAATGGGAGTTCTGGGTCAGACAAGAACAATTCAGAACCAGAACGCAAGCCCAAGGTGATTCCTAGGAGAGAAGTTCCACCAAAACCAATCCAATCTGTGTCTGCTGCTCAAAATAGACAGAGAGAACAGAGGGAAAGAAATTTTGACGCTGACGATAAACTGGCTTCAGCACGAAAACGACTTCAAGCGAATTACAAAGAAGCCGAGAATGCCAAAAGGCAAAGAACAATTCAAGTGATGGACATCCATGAGATACCAAAACCAAAGAACTCCTTCATCGCCAAGAACAAAGGCGGCGGAGGTAGCGGTTCTCACCAGGGCAGGCATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006354 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0018130 GO:0019438 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0070449 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med26

Protein Analysis

337

Amino Acids

37.87

Weight (kDa)

5.57

Isoelectric Point (pI)

51.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med26	PF08711	132 - 183	1.9e-12	TFIIS helical bundle-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09850 AT5G09850 AT5G09850 AT5G09850 AT5G09850
fragaria_vesca	FvH4_1g23670 FvH4_1g23670 FvH4_1g23670 FvH4_1g23670
malus_domestica	MD01G1024900.v1.1 MD15G1319400.v1.1
prunus_persica	Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1
pyrus_communis	pycom01g05280 pycom15g29740
rosa_chinensis	RchiOBHm_Chr2g0119271
rosa_laevigata	RLG00000018461
rosa_multiflora	Rmu_co8400383.1_g000001 Rmu_sc0002788.1_g000002 Rmu_ssc0000264.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124360
rosa_rugosa	Rorug02G0221400 Rorug02G0221400
rosa_samantha	Rh2AG279500 Rh2BG290200 Rh2DG285500 Rh2DG304500
rosa_wichuraiana	Rw2G022230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	247
AccB1I	GGYRCC	3 cut(s)	111, 146, 177
AccII	CGCG	4 cut(s)	68, 77, 175, 209
AclWI	GGATC	4 cut(s)	293, 306, 359, 372
AcsI	RAATTY	1 cut(s)	820
AcuI	CTGAAG	1 cut(s)	831
AcvI	CACGTG	1 cut(s)	153
AcyI	GRCGYC	3 cut(s)	112, 147, 242
AfiI	CCNNNNNNNGG	3 cut(s)	308, 659, 683
AflIII	ACRYGT	2 cut(s)	48, 152
AgsI	TTSAA	4 cut(s)	395, 404, 866, 914
AjiI	CACGTC	1 cut(s)	49
AjnI	CCWGG	2 cut(s)	645, 996
AluBI	AGCT	2 cut(s)	106, 358
AluI	AGCT	2 cut(s)	106, 358
Alw21I	GWGCWC	3 cut(s)	33, 108, 160
Alw26I	GTCTC	4 cut(s)	114, 143, 258, 600
Alw44I	GTGCAC	1 cut(s)	29
AlwI	GGATC	4 cut(s)	293, 306, 359, 372
ApaLI	GTGCAC	1 cut(s)	29
ApeKI	GCWGC	5 cut(s)	83, 99, 217, 355, 785
ApoI	RAATTY	1 cut(s)	820
AsiSI	GCGATCGC	1 cut(s)	75
Asp700I	GAANNNNTTC	2 cut(s)	399, 953
AspA2I	CCTAGG	1 cut(s)	743
AspLEI	GCGC	3 cut(s)	114, 149, 308
AsuHPI	GGTGA	6 cut(s)	571, 603, 620, 635, 748, 986
AvrII	CCTAGG	1 cut(s)	743
AxyI	CCTNAGG	1 cut(s)	37
BaeGI	GKGCMC	1 cut(s)	33
BamHI	GGATCC	2 cut(s)	298, 364
BanI	GGYRCC	3 cut(s)	111, 146, 177
BanII	GRGCYC	2 cut(s)	108, 330
BbrPI	CACGTG	1 cut(s)	153
Bbv12I	GWGCWC	3 cut(s)	33, 108, 160
BbvI	GCAGC	5 cut(s)	70, 111, 229, 367, 772
BccI	CCATC	2 cut(s)	191, 913
BceAI	ACGGC	1 cut(s)	160
BciT130I	CCWGG	2 cut(s)	647, 998
BciVI	GTATCC	1 cut(s)	439
BclI	TGATCA	1 cut(s)	370
BcoDI	GTCTC	4 cut(s)	114, 143, 258, 600
BfaI	CTAG	2 cut(s)	410, 744
BfoI	RGCGCY	2 cut(s)	115, 150
BfuI	GTATCC	1 cut(s)	439
BlnI	CCTAGG	1 cut(s)	743
Bme1390I	CCNGG	2 cut(s)	647, 998
BmgBI	CACGTC	1 cut(s)	49
BmiI	GGNNCC	6 cut(s)	113, 148, 179, 300, 366, 651
BmrFI	CCNGG	2 cut(s)	647, 998
Bpu10I	CCTNAGC	1 cut(s)	107
BpuEI	CTTGAG	3 cut(s)	37, 380, 425
BsaAI	YACGTR	1 cut(s)	153
BsaBI	GATNNNNATC	2 cut(s)	369, 923
BsaHI	GRCGYC	3 cut(s)	112, 147, 242
BsaJI	CCNNGG	4 cut(s)	173, 732, 743, 997
BsaXI	ACNNNNNCTCC	4 cut(s)	109, 139, 142, 172
Bsc4I	CCNNNNNNNGG	3 cut(s)	308, 659, 683
Bse118I	RCCGGY	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	846
Bse21I	CCTNAGG	1 cut(s)	37
Bse8I	GATNNNNATC	2 cut(s)	369, 923
BseBI	CCWGG	2 cut(s)	647, 998
BseDI	CCNNGG	4 cut(s)	173, 732, 743, 997
BseGI	GGATG	5 cut(s)	97, 207, 280, 556, 924
BseJI	GATNNNNATC	2 cut(s)	369, 923
BseLI	CCNNNNNNNGG	3 cut(s)	308, 659, 683
BseMII	CTCAG	3 cut(s)	51, 121, 369
BseNI	ACTGG	1 cut(s)	846
BseRI	GAGGAG	6 cut(s)	150, 153, 284, 293, 296, 305
BseSI	GKGCMC	1 cut(s)	33
BseXI	GCAGC	5 cut(s)	70, 111, 229, 367, 772
Bsh1236I	CGCG	4 cut(s)	68, 77, 175, 209
Bsh1285I	CGRYCG	1 cut(s)	75
BshNI	GGYRCC	3 cut(s)	111, 146, 177
BsiEI	CGRYCG	1 cut(s)	75
BsiHKAI	GWGCWC	3 cut(s)	33, 108, 160
BsiSI	CCGG	2 cut(s)	115, 236
BslI	CCNNNNNNNGG	3 cut(s)	308, 659, 683
BsmAI	GTCTC	4 cut(s)	114, 143, 258, 600
BsmBI	CGTCTC	3 cut(s)	114, 143, 258
BsmI	GAATGC	1 cut(s)	895
Bsp1286I	GDGCHC	4 cut(s)	33, 108, 160, 330
Bsp143I	GATC	4 cut(s)	72, 298, 364, 370
BspCNI	CTCAG	3 cut(s)	50, 120, 370
BspFNI	CGCG	4 cut(s)	68, 77, 175, 209
BspLI	GGNNCC	6 cut(s)	113, 148, 179, 300, 366, 651
BspPI	GGATC	4 cut(s)	293, 306, 359, 372
BspT107I	GGYRCC	3 cut(s)	111, 146, 177
BsrFI	RCCGGY	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	846
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	4 cut(s)	173, 732, 743, 997
BssMI	GATC	4 cut(s)	72, 298, 364, 370
BssNI	GRCGYC	3 cut(s)	112, 147, 242
BssT1I	CCWWGG	2 cut(s)	732, 743
Bst2UI	CCWGG	2 cut(s)	647, 998
Bst4CI	ACNGT	1 cut(s)	125
Bst6I	CTCTTC	1 cut(s)	282
BstACI	GRCGYC	3 cut(s)	112, 147, 242
BstBAI	YACGTR	1 cut(s)	153
BstC8I	GCNNGC	5 cut(s)	104, 237, 482, 728, 1004
BstDEI	CTNAG	3 cut(s)	37, 107, 378
BstDSI	CCRYGG	1 cut(s)	173
BstF5I	GGATG	5 cut(s)	97, 207, 280, 556, 924
BstFNI	CGCG	4 cut(s)	68, 77, 175, 209
BstH2I	RGCGCY	2 cut(s)	115, 150
BstHHI	GCGC	3 cut(s)	114, 149, 308
BstKTI	GATC	4 cut(s)	75, 301, 367, 373
BstMAI	GTCTC	4 cut(s)	114, 143, 258, 600
BstMBI	GATC	4 cut(s)	72, 298, 364, 370
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	7 cut(s)	74, 83, 155, 186, 241, 890, 984
BstNI	CCWGG	2 cut(s)	647, 998
BstSCI	CCNGG	2 cut(s)	645, 996
BstSLI	GKGCMC	1 cut(s)	33
BstUI	CGCG	4 cut(s)	68, 77, 175, 209
BstV1I	GCAGC	5 cut(s)	70, 111, 229, 367, 772
BstX2I	RGATCY	2 cut(s)	298, 364
BstYI	RGATCY	2 cut(s)	298, 364
Bsu36I	CCTNAGG	1 cut(s)	37
BsuI	GTATCC	1 cut(s)	439
BtgI	CCRYGG	1 cut(s)	173
BtgZI	GCGATG	1 cut(s)	943
BtrI	CACGTC	1 cut(s)	49
BtsCI	GGATG	5 cut(s)	97, 207, 280, 556, 924
Cac8I	GCNNGC	5 cut(s)	104, 237, 482, 728, 1004
CfoI	GCGC	3 cut(s)	114, 149, 308
Cfr10I	RCCGGY	1 cut(s)	235
Cfr42I	CCGCGG	1 cut(s)	176
CseI	GACGC	4 cut(s)	74, 125, 250, 836
CsiI	ACCWGGT	1 cut(s)	645
CviAII	CATG	4 cut(s)	418, 569, 595, 929
DdeI	CTNAG	3 cut(s)	37, 107, 378
DinI	GGCGCC	2 cut(s)	113, 148
DpnI	GATC	4 cut(s)	74, 300, 366, 372
DpnII	GATC	4 cut(s)	72, 298, 364, 370
DrdI	GACNNNNNNGTC	1 cut(s)	247
DseDI	GACNNNNNNGTC	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
EciI	GGCGGA	2 cut(s)	156, 993
Ecl136II	GAGCTC	1 cut(s)	106
Eco130I	CCWWGG	2 cut(s)	732, 743
Eco24I	GRGCYC	2 cut(s)	108, 330
Eco32I	GATATC	1 cut(s)	346
Eco53kI	GAGCTC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	831
Eco72I	CACGTG	1 cut(s)	153
Eco81I	CCTNAGG	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	106
EcoRII	CCWGG	2 cut(s)	645, 996
EcoRV	GATATC	1 cut(s)	346
EcoT14I	CCWWGG	2 cut(s)	732, 743
EcoT38I	GRGCYC	2 cut(s)	108, 330
EgeI	GGCGCC	2 cut(s)	113, 148
EheI	GGCGCC	2 cut(s)	113, 148
ErhI	CCWWGG	2 cut(s)	732, 743
Esp3I	CGTCTC	3 cut(s)	114, 143, 258
FaeI	CATG	4 cut(s)	421, 572, 598, 932
FaiI	YATR	6 cut(s)	419, 425, 570, 596, 681, 930
FalI	AAGNNNNNCTT	2 cut(s)	938, 970
FatI	CATG	4 cut(s)	417, 568, 594, 928
FbaI	TGATCA	1 cut(s)	370
FokI	GGATG	5 cut(s)	104, 214, 287, 563, 911
FriOI	GRGCYC	2 cut(s)	108, 330
FspBI	CTAG	2 cut(s)	410, 744
GlaI	GCGC	3 cut(s)	113, 148, 307
HaeII	RGCGCY	2 cut(s)	115, 150
HapII	CCGG	2 cut(s)	115, 236
HgaI	GACGC	4 cut(s)	74, 125, 250, 836
HhaI	GCGC	3 cut(s)	114, 149, 308
Hin1I	GRCGYC	3 cut(s)	112, 147, 242
Hin1II	CATG	4 cut(s)	421, 572, 598, 932
Hin6I	GCGC	3 cut(s)	112, 147, 306
HinP1I	GCGC	3 cut(s)	112, 147, 306
HincII	GTYRAC	2 cut(s)	415, 601
HindII	GTYRAC	2 cut(s)	415, 601
HinfI	GANTC	5 cut(s)	337, 383, 469, 608, 739
HpaII	CCGG	2 cut(s)	115, 236
HphI	GGTGA	6 cut(s)	571, 603, 620, 635, 748, 986
Hpy166II	GTNNAC	5 cut(s)	31, 46, 54, 415, 601
Hpy188I	TCNGA	4 cut(s)	379, 507, 700, 715
Hpy188III	TCNNGA	5 cut(s)	341, 349, 368, 529, 653
Hpy8I	GTNNAC	5 cut(s)	31, 46, 54, 415, 601
Hpy99I	CGWCG	4 cut(s)	14, 68, 194, 244
HpyAV	CCTTC	1 cut(s)	964
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4IV	ACGT	3 cut(s)	48, 56, 152
HpyCH4V	TGCA	1 cut(s)	31
HpyF10VI	GCNNNNNNNGC	7 cut(s)	74, 83, 155, 186, 241, 890, 984
HpyF3I	CTNAG	3 cut(s)	37, 107, 378
HpySE526I	ACGT	3 cut(s)	48, 56, 152
Hsp92I	GRCGYC	3 cut(s)	112, 147, 242
Hsp92II	CATG	4 cut(s)	421, 572, 598, 932
HspAI	GCGC	3 cut(s)	112, 147, 306
KasI	GGCGCC	2 cut(s)	111, 146
KroI	GCCGGC	1 cut(s)	235
KroNI	GCCGGC	1 cut(s)	237
Ksp22I	TGATCA	1 cut(s)	370
KspI	CCGCGG	1 cut(s)	176
Kzo9I	GATC	4 cut(s)	72, 298, 364, 370
LmnI	GCTCC	2 cut(s)	133, 163
Lsp1109I	GCAGC	5 cut(s)	70, 111, 229, 367, 772
MabI	ACCWGGT	1 cut(s)	645
MaeI	CTAG	2 cut(s)	410, 744
MaeII	ACGT	3 cut(s)	48, 56, 152
MaeIII	GTNAC	2 cut(s)	564, 662
MalI	GATC	4 cut(s)	74, 300, 366, 372
MboI	GATC	4 cut(s)	72, 298, 364, 370
MboII	GAAGA	2 cut(s)	299, 346
MflI	RGATCY	2 cut(s)	298, 364
MhlI	GDGCHC	4 cut(s)	33, 108, 160, 330
MluCI	AATT	8 cut(s)	395, 473, 509, 586, 709, 820, 871, 909
Mly113I	GGCGCC	2 cut(s)	112, 147
MlyI	GAGTC	2 cut(s)	478, 602
MmeI	TCCRAC	1 cut(s)	276
MreI	CGCCGGCG	1 cut(s)	235
MroNI	GCCGGC	1 cut(s)	235
MroXI	GAANNNNTTC	2 cut(s)	399, 953
MslI	CAYNNNNRTG	1 cut(s)	633
MspA1I	CMGCKG	1 cut(s)	175
MspI	CCGG	2 cut(s)	115, 236
MspR9I	CCNGG	2 cut(s)	647, 998
Mva1269I	GAATGC	1 cut(s)	895
MvaI	CCWGG	2 cut(s)	647, 998
MvnI	CGCG	4 cut(s)	68, 77, 175, 209
MwoI	GCNNNNNNNGC	7 cut(s)	74, 83, 155, 186, 241, 890, 984
NaeI	GCCGGC	1 cut(s)	237
NarI	GGCGCC	2 cut(s)	112, 147
NdeII	GATC	4 cut(s)	72, 298, 364, 370
NgoMIV	GCCGGC	1 cut(s)	235
NlaIII	CATG	4 cut(s)	421, 572, 598, 932
NlaIV	GGNNCC	6 cut(s)	113, 148, 179, 300, 366, 651
NmeAIII	GCCGAG	1 cut(s)	910
PctI	GAATGC	1 cut(s)	895
PdiI	GCCGGC	1 cut(s)	237
PdmI	GAANNNNTTC	2 cut(s)	399, 953
PfeI	GAWTC	3 cut(s)	337, 383, 739
Ple19I	CGATCG	1 cut(s)	75
PleI	GAGTC	2 cut(s)	477, 602
PluTI	GGCGCC	2 cut(s)	115, 150
PmaCI	CACGTG	1 cut(s)	153
PmlI	CACGTG	1 cut(s)	153
PpsI	GAGTC	2 cut(s)	477, 602
Ppu21I	YACGTR	1 cut(s)	153
Psp124BI	GAGCTC	1 cut(s)	108
Psp6I	CCWGG	2 cut(s)	645, 996
PspCI	CACGTG	1 cut(s)	153
PspGI	CCWGG	2 cut(s)	645, 996
PspN4I	GGNNCC	6 cut(s)	113, 148, 179, 300, 366, 651
PsuI	RGATCY	2 cut(s)	298, 364
PvuI	CGATCG	1 cut(s)	75
RgaI	GCGATCGC	1 cut(s)	75
RseI	CAYNNNNRTG	1 cut(s)	633
SacI	GAGCTC	1 cut(s)	108
SacII	CCGCGG	1 cut(s)	176
Sau3AI	GATC	4 cut(s)	72, 298, 364, 370
SchI	GAGTC	2 cut(s)	478, 602
ScrFI	CCNGG	2 cut(s)	647, 998
SduI	GDGCHC	4 cut(s)	33, 108, 160, 330
SexAI	ACCWGGT	1 cut(s)	645
SfaAI	GCGATCGC	1 cut(s)	75
SfoI	GGCGCC	2 cut(s)	113, 148
Sfr303I	CCGCGG	1 cut(s)	176
SgfI	GCGATCGC	1 cut(s)	75
SgrAI	CRCCGGYG	1 cut(s)	235
SgrBI	CCGCGG	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	633
SmlI	CTYRAG	3 cut(s)	16, 359, 440
SmoI	CTYRAG	3 cut(s)	16, 359, 440
Sse9I	AATT	8 cut(s)	395, 473, 509, 586, 709, 820, 871, 909
SspDI	GGCGCC	2 cut(s)	111, 146
SspMI	CTAG	2 cut(s)	410, 744
SstI	GAGCTC	1 cut(s)	108
StyD4I	CCNGG	2 cut(s)	645, 996
StyI	CCWWGG	2 cut(s)	732, 743
TaaI	ACNGT	1 cut(s)	125
TaiI	ACGT	3 cut(s)	51, 59, 155
TaqI	TCGA	2 cut(s)	63, 318
TasI	AATT	8 cut(s)	395, 473, 509, 586, 709, 820, 871, 909
TauI	GCSGC	5 cut(s)	71, 172, 175, 247, 978
TfiI	GAWTC	3 cut(s)	337, 383, 739
TseI	GCWGC	5 cut(s)	83, 99, 217, 355, 785
TspDTI	ATGAA	4 cut(s)	49, 218, 567, 946
TspGWI	ACGGA	2 cut(s)	207, 618
VneI	GTGCAC	1 cut(s)	29
XapI	RAATTY	1 cut(s)	820
XmaJI	CCTAGG	1 cut(s)	743
XmnI	GAANNNNTTC	2 cut(s)	399, 953
XspI	CTAG	2 cut(s)	410, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.