FvH4_1g23670

mediator of RNA polymerase II transcription subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
15509788 .. 15513778
3991 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g23670.t4

Sequence Viewer

Length: 1035 bp
ATGGATTACGACGACTTGAGGACGATTGTGCAGAGCTCAGGGGTGGACGTGTTTACGTTCATCGATACGGCGATCGCGGTTGCTGCGGTGGACGAGGGCAGCGAGCTGAGGCGTAGGAGAGACGGTATCGTGGAGAGGCTATATGCCGCCACGTGTGCTCCGCCGCTGCAGCGCTGCCAGAACTGCGACGGAGGAGATGGAATGATGAACGGGAACCCAGCTCGGGGGAAAGGAGTCTCGCCGGCGACGCCGCAGTCGGTGGATAACAGAGAGGAGGAGGAGGAGGATGAGGAGGAAGAGGAGTTGGATCCCTGTGCCGGATTGTTTGATGATGAACCGCCGAGGAAAATTCTTGATATCAAGAAGCAGCTTGAGGATCCTGATCAGTCTGAGGATTCACTGGTTGAATTGCTTCAAAACCTAGTTGACATGGATATATCATTCCAAGACCTCAAGGATACTGATATTGGGAGGCATGTGAGTCAATTACGCAAGCAACAGCAGAGCGAGGTTGTTCGGAGATTGGCAAAGCAGCTTGTCAGGAAATGGAAAGGTACTGTGGATGAATGGGTGAAGTTACATGGAGAAGAGCCAACTAATTCTGTCATGGTTGATGGAGACTCACCACAGCAGAAAATTCACCAGAATGGTCATCACCAGGTGCCTGATTTTGGTTACTCCCCAAATCCTCATAACGGAAGTTCTGGGTCAGACAAGAACAATTCAGAACCAGAACGCAAGCCGAAGATCATTCCTAAGAGAGAAGTTCCACCCAGACCAACCCAATCTGTGTCTGCTGCTCCTCCTGCTCAAAATAGACAAAGAGAACAGAGGGAAAGAAATTTCGACGCTGATGATAAACTGGCTTCGGCACGAAAACGGCTTCAAGCAAATTACAAAGAAGCTGAGAATGCTAAAAGGCAAAGAACAATTCAAGTGATGGACATCCATGAGATACCGAAACCAAAGAACTCCTTCATCGCCAAGAACAGAGGCGGAGGAGGTAGCGGTTCTCACCCGGGAAGGCATTGGTGA

Protein Analysis

345

Amino Acids

38.66

Weight (kDa)

5.43

Isoelectric Point (pI)

58.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Med26 PF08711 136 - 186 1.6e-13 TFIIS helical bundle-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 253
AccB1I GGYRCC 1 cut(s) 661
AccII CGCG 1 cut(s) 77
AciI CCGC 9 cut(s) 77, 86, 147, 161, 164, 251, 338, 996, 1008
AclWI GGATC 4 cut(s) 302, 315, 371, 384
AcsI RAATTY 3 cut(s) 348, 636, 841
AcvI CACGTG 1 cut(s) 153
AcyI GRCGYC 1 cut(s) 248
AdeI CACNNNGTG 1 cut(s) 661
AfaI GTAC 1 cut(s) 556
AfeI AGCGCT 1 cut(s) 173
AfiI CCNNNNNNNGG 5 cut(s) 223, 224, 317, 671, 695
AflIII ACRYGT 2 cut(s) 48, 152
AgsI TTSAA 4 cut(s) 407, 416, 887, 935
AjiI CACGTC 1 cut(s) 49
AjnI CCWGG 1 cut(s) 657
AluBI AGCT 6 cut(s) 36, 106, 221, 370, 535, 905
AluI AGCT 6 cut(s) 36, 106, 221, 370, 535, 905
Alw21I GWGCWC 2 cut(s) 38, 160
Alw26I GTCTC 3 cut(s) 114, 241, 612
AlwI GGATC 4 cut(s) 302, 315, 371, 384
Ama87I CYCGRG 2 cut(s) 222, 1018
Aor51HI AGCGCT 1 cut(s) 173
ApeKI GCWGC 8 cut(s) 83, 99, 166, 169, 174, 367, 532, 797
ApoI RAATTY 3 cut(s) 348, 636, 841
AsiSI GCGATCGC 1 cut(s) 75
Asp700I GAANNNNTTC 2 cut(s) 411, 974
AspLEI GCGC 1 cut(s) 174
AsuC2I CCSGG 2 cut(s) 1019, 1020
AsuHPI GGTGA 5 cut(s) 583, 615, 632, 647, 1007
AvaI CYCGRG 2 cut(s) 222, 1018
BamHI GGATCC 2 cut(s) 307, 376
BanI GGYRCC 1 cut(s) 661
BanII GRGCYC 1 cut(s) 38
BbrPI CACGTG 1 cut(s) 153
Bbv12I GWGCWC 2 cut(s) 38, 160
BbvCI CCTCAGC 1 cut(s) 107
BbvI GCAGC 8 cut(s) 70, 111, 153, 161, 181, 379, 544, 784
BccI CCATC 3 cut(s) 191, 608, 934
BceAI ACGGC 2 cut(s) 84, 896
BciT130I CCWGG 1 cut(s) 659
BciVI GTATCC 1 cut(s) 451
BclI TGATCA 1 cut(s) 382
BcnI CCSGG 2 cut(s) 1019, 1020
BcoDI GTCTC 3 cut(s) 114, 241, 612
BfaI CTAG 1 cut(s) 422
BfmI CTRYAG 1 cut(s) 167
BfoI RGCGCY 1 cut(s) 175
BfuI GTATCC 1 cut(s) 451
Bme1390I CCNGG 3 cut(s) 659, 1019, 1020
BmeT110I CYCGRG 2 cut(s) 222, 1018
BmgBI CACGTC 1 cut(s) 49
BmiI GGNNCC 4 cut(s) 215, 309, 378, 663
BmrFI CCNGG 3 cut(s) 659, 1019, 1020
Bpu10I CCTNAGC 2 cut(s) 37, 107
BpuEI CTTGAG 3 cut(s) 37, 392, 437
BpuMI CCSGG 2 cut(s) 1019, 1020
Bsa29I ATCGAT 1 cut(s) 63
BsaAI YACGTR 1 cut(s) 153
BsaBI GATNNNNATC 2 cut(s) 381, 944
BsaHI GRCGYC 1 cut(s) 248
BsaJI CCNNGG 2 cut(s) 341, 1018
BsaXI ACNNNNNCTCC 4 cut(s) 109, 139, 142, 172
Bsc4I CCNNNNNNNGG 5 cut(s) 223, 224, 317, 671, 695
Bse118I RCCGGY 1 cut(s) 241
Bse1I ACTGG 2 cut(s) 405, 867
Bse8I GATNNNNATC 2 cut(s) 381, 944
BseBI CCWGG 1 cut(s) 659
BseCI ATCGAT 1 cut(s) 63
BseDI CCNNGG 2 cut(s) 341, 1018
BseGI GGATG 3 cut(s) 292, 568, 945
BseJI GATNNNNATC 2 cut(s) 381, 944
BseLI CCNNNNNNNGG 5 cut(s) 223, 224, 317, 671, 695
BseMII CTCAG 4 cut(s) 51, 98, 381, 897
BseNI ACTGG 2 cut(s) 405, 867
BseRI GAGGAG 9 cut(s) 207, 287, 290, 293, 296, 305, 314, 792, 1014
BseXI GCAGC 8 cut(s) 70, 111, 153, 161, 181, 379, 544, 784
BseYI CCCAGC 1 cut(s) 217
BsgI GTGCAG 1 cut(s) 50
Bsh1236I CGCG 1 cut(s) 77
Bsh1285I CGRYCG 1 cut(s) 75
BshNI GGYRCC 1 cut(s) 661
BshVI ATCGAT 1 cut(s) 63
BsiEI CGRYCG 1 cut(s) 75
BsiHKAI GWGCWC 2 cut(s) 38, 160
BsiHKCI CYCGRG 2 cut(s) 222, 1018
BsiSI CCGG 3 cut(s) 242, 318, 1019
BslI CCNNNNNNNGG 5 cut(s) 223, 224, 317, 671, 695
BsmAI GTCTC 3 cut(s) 114, 241, 612
BsmBI CGTCTC 1 cut(s) 114
BsmI GAATGC 1 cut(s) 916
BsoBI CYCGRG 2 cut(s) 222, 1018
Bsp1286I GDGCHC 2 cut(s) 38, 160
Bsp143I GATC 5 cut(s) 72, 307, 376, 382, 747
BspACI CCGC 9 cut(s) 77, 86, 147, 161, 164, 251, 338, 996, 1008
BspCNI CTCAG 4 cut(s) 50, 99, 382, 898
BspDI ATCGAT 1 cut(s) 63
BspFNI CGCG 1 cut(s) 77
BspLI GGNNCC 4 cut(s) 215, 309, 378, 663
BspMAI CTGCAG 1 cut(s) 171
BspPI GGATC 4 cut(s) 302, 315, 371, 384
BspQI GCTCTTC 1 cut(s) 582
BspT107I GGYRCC 1 cut(s) 661
BsrFI RCCGGY 1 cut(s) 241
BsrI ACTGG 2 cut(s) 405, 867
BssAI RCCGGY 1 cut(s) 241
BssECI CCNNGG 2 cut(s) 341, 1018
BssMI GATC 5 cut(s) 72, 307, 376, 382, 747
BssNI GRCGYC 1 cut(s) 248
Bst2UI CCWGG 1 cut(s) 659
Bst4CI ACNGT 2 cut(s) 125, 559
Bst6I CTCTTC 2 cut(s) 291, 582
BstACI GRCGYC 1 cut(s) 248
BstBAI YACGTR 1 cut(s) 153
BstC8I GCNNGC 4 cut(s) 104, 243, 494, 740
BstDEI CTNAG 5 cut(s) 37, 107, 390, 756, 906
BstF5I GGATG 3 cut(s) 292, 568, 945
BstFNI CGCG 1 cut(s) 77
BstH2I RGCGCY 1 cut(s) 175
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 5 cut(s) 75, 310, 379, 385, 750
BstMAI GTCTC 3 cut(s) 114, 241, 612
BstMBI GATC 5 cut(s) 72, 307, 376, 382, 747
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 7 cut(s) 83, 155, 169, 183, 247, 806, 911
BstNI CCWGG 1 cut(s) 659
BstNSI RCATGY 1 cut(s) 479
BstSCI CCNGG 3 cut(s) 657, 1017, 1018
BstSFI CTRYAG 1 cut(s) 167
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 8 cut(s) 70, 111, 153, 161, 181, 379, 544, 784
BstX2I RGATCY 2 cut(s) 307, 376
BstYI RGATCY 2 cut(s) 307, 376
Bsu15I ATCGAT 1 cut(s) 63
BsuI GTATCC 1 cut(s) 451
BsuTUI ATCGAT 1 cut(s) 63
BtgZI GCGATG 1 cut(s) 964
BtrI CACGTC 1 cut(s) 49
BtsCI GGATG 3 cut(s) 292, 568, 945
BtsIMutI CAGTG 1 cut(s) 398
Cac8I GCNNGC 4 cut(s) 104, 243, 494, 740
CfoI GCGC 1 cut(s) 174
Cfr10I RCCGGY 1 cut(s) 241
Cfr9I CCCGGG 1 cut(s) 1018
ClaI ATCGAT 1 cut(s) 63
CseI GACGC 2 cut(s) 256, 857
CsiI ACCWGGT 1 cut(s) 657
Csp6I GTAC 1 cut(s) 555
CviAII CATG 5 cut(s) 430, 476, 581, 607, 950
CviQI GTAC 1 cut(s) 555
DdeI CTNAG 5 cut(s) 37, 107, 390, 756, 906
DpnI GATC 5 cut(s) 74, 309, 378, 384, 749
DpnII GATC 5 cut(s) 72, 307, 376, 382, 747
DraIII CACNNNGTG 1 cut(s) 661
DrdI GACNNNNNNGTC 1 cut(s) 253
DseDI GACNNNNNNGTC 1 cut(s) 253
Eam1104I CTCTTC 2 cut(s) 291, 582
EarI CTCTTC 2 cut(s) 291, 582
EciI GGCGGA 2 cut(s) 150, 1011
Ecl136II GAGCTC 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 38
Eco32I GATATC 1 cut(s) 358
Eco47III AGCGCT 1 cut(s) 173
Eco53kI GAGCTC 1 cut(s) 36
Eco72I CACGTG 1 cut(s) 153
Eco88I CYCGRG 2 cut(s) 222, 1018
EcoICRI GAGCTC 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 657
EcoRV GATATC 1 cut(s) 358
EcoT38I GRGCYC 1 cut(s) 38
Esp3I CGTCTC 1 cut(s) 114
FaeI CATG 5 cut(s) 433, 479, 584, 610, 953
FaiI YATR 9 cut(s) 142, 144, 431, 437, 477, 582, 608, 693, 951
FalI AAGNNNNNCTT 2 cut(s) 959, 991
FatI CATG 5 cut(s) 429, 475, 580, 606, 949
FbaI TGATCA 1 cut(s) 382
FokI GGATG 3 cut(s) 299, 575, 932
FriOI GRGCYC 1 cut(s) 38
FspBI CTAG 1 cut(s) 422
GlaI GCGC 1 cut(s) 173
GsaI CCCAGC 1 cut(s) 221
HaeII RGCGCY 1 cut(s) 175
HapII CCGG 3 cut(s) 242, 318, 1019
HgaI GACGC 2 cut(s) 256, 857
HhaI GCGC 1 cut(s) 174
Hin1I GRCGYC 1 cut(s) 248
Hin1II CATG 5 cut(s) 433, 479, 584, 610, 953
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HinfI GANTC 4 cut(s) 234, 395, 481, 620
HpaII CCGG 3 cut(s) 242, 318, 1019
HphI GGTGA 5 cut(s) 583, 615, 632, 647, 1007
Hpy166II GTNNAC 4 cut(s) 46, 54, 91, 427
Hpy188I TCNGA 4 cut(s) 391, 519, 712, 727
Hpy188III TCNNGA 4 cut(s) 353, 361, 380, 541
Hpy8I GTNNAC 4 cut(s) 46, 54, 91, 427
Hpy99I CGWCG 4 cut(s) 14, 191, 250, 851
HpyAV CCTTC 2 cut(s) 985, 1017
HpyCH4III ACNGT 2 cut(s) 125, 559
HpyCH4IV ACGT 3 cut(s) 48, 56, 152
HpyCH4V TGCA 2 cut(s) 31, 169
HpyF10VI GCNNNNNNNGC 7 cut(s) 83, 155, 169, 183, 247, 806, 911
HpyF3I CTNAG 5 cut(s) 37, 107, 390, 756, 906
HpySE526I ACGT 3 cut(s) 48, 56, 152
Hsp92I GRCGYC 1 cut(s) 248
Hsp92II CATG 5 cut(s) 433, 479, 584, 610, 953
HspAI GCGC 1 cut(s) 172
KroI GCCGGC 1 cut(s) 241
KroNI GCCGGC 1 cut(s) 243
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 5 cut(s) 72, 307, 376, 382, 747
LguI GCTCTTC 1 cut(s) 582
LmnI GCTCC 2 cut(s) 163, 805
Lsp1109I GCAGC 8 cut(s) 70, 111, 153, 161, 181, 379, 544, 784
MabI ACCWGGT 1 cut(s) 657
MaeI CTAG 1 cut(s) 422
MaeII ACGT 3 cut(s) 48, 56, 152
MaeIII GTNAC 2 cut(s) 576, 674
MalI GATC 5 cut(s) 74, 309, 378, 384, 749
MboI GATC 5 cut(s) 72, 307, 376, 382, 747
MboII GAAGA 3 cut(s) 308, 599, 757
MflI RGATCY 2 cut(s) 307, 376
MhlI GDGCHC 2 cut(s) 38, 160
MluCI AATT 9 cut(s) 348, 407, 485, 598, 636, 721, 841, 892, 930
MlyI GAGTC 3 cut(s) 243, 490, 614
MmeI TCCRAC 1 cut(s) 285
MreI CGCCGGCG 1 cut(s) 241
MroNI GCCGGC 1 cut(s) 241
MroXI GAANNNNTTC 2 cut(s) 411, 974
MslI CAYNNNNRTG 1 cut(s) 645
MspA1I CMGCKG 1 cut(s) 166
MspI CCGG 3 cut(s) 242, 318, 1019
MspR9I CCNGG 3 cut(s) 659, 1019, 1020
Mva1269I GAATGC 1 cut(s) 916
MvaI CCWGG 1 cut(s) 659
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 7 cut(s) 83, 155, 169, 183, 247, 806, 911
NaeI GCCGGC 1 cut(s) 243
NciI CCSGG 2 cut(s) 1019, 1020
NdeII GATC 5 cut(s) 72, 307, 376, 382, 747
NgoMIV GCCGGC 1 cut(s) 241
NlaIII CATG 5 cut(s) 433, 479, 584, 610, 953
NlaIV GGNNCC 4 cut(s) 215, 309, 378, 663
NmeAIII GCCGAG 1 cut(s) 366
NspI RCATGY 1 cut(s) 479
PciSI GCTCTTC 1 cut(s) 582
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PctI GAATGC 1 cut(s) 916
PdiI GCCGGC 1 cut(s) 243
PdmI GAANNNNTTC 2 cut(s) 411, 974
PfeI GAWTC 1 cut(s) 395
Ple19I CGATCG 1 cut(s) 75
PleI GAGTC 3 cut(s) 242, 489, 614
PmaCI CACGTG 1 cut(s) 153
PmlI CACGTG 1 cut(s) 153
PpsI GAGTC 3 cut(s) 242, 489, 614
Ppu21I YACGTR 1 cut(s) 153
Psp124BI GAGCTC 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 657
PspCI CACGTG 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 217
PspGI CCWGG 1 cut(s) 657
PspN4I GGNNCC 4 cut(s) 215, 309, 378, 663
PstI CTGCAG 1 cut(s) 171
PsuI RGATCY 2 cut(s) 307, 376
PvuI CGATCG 1 cut(s) 75
RgaI GCGATCGC 1 cut(s) 75
RsaI GTAC 1 cut(s) 556
RsaNI GTAC 1 cut(s) 555
RseI CAYNNNNRTG 1 cut(s) 645
SacI GAGCTC 1 cut(s) 38
SapI GCTCTTC 1 cut(s) 582
Sau3AI GATC 5 cut(s) 72, 307, 376, 382, 747
SchI GAGTC 3 cut(s) 243, 490, 614
ScrFI CCNGG 3 cut(s) 659, 1019, 1020
SduI GDGCHC 2 cut(s) 38, 160
SexAI ACCWGGT 1 cut(s) 657
SfaAI GCGATCGC 1 cut(s) 75
SfcI CTRYAG 1 cut(s) 167
SgfI GCGATCGC 1 cut(s) 75
SgrAI CRCCGGYG 1 cut(s) 241
SmaI CCCGGG 1 cut(s) 1020
SmiMI CAYNNNNRTG 1 cut(s) 645
SmlI CTYRAG 3 cut(s) 16, 371, 452
SmoI CTYRAG 3 cut(s) 16, 371, 452
Sse9I AATT 9 cut(s) 348, 407, 485, 598, 636, 721, 841, 892, 930
SsiI CCGC 9 cut(s) 77, 86, 147, 161, 164, 251, 338, 996, 1008
SspMI CTAG 1 cut(s) 422
SstI GAGCTC 1 cut(s) 38
StyD4I CCNGG 3 cut(s) 657, 1017, 1018
TaaI ACNGT 2 cut(s) 125, 559
TaiI ACGT 3 cut(s) 51, 59, 155
TaqI TCGA 2 cut(s) 63, 846
TasI AATT 9 cut(s) 348, 407, 485, 598, 636, 721, 841, 892, 930
TauI GCSGC 3 cut(s) 149, 166, 253
TfiI GAWTC 1 cut(s) 395
TscAI CASTG 1 cut(s) 405
TseI GCWGC 8 cut(s) 83, 99, 166, 169, 174, 367, 532, 797
TspDTI ATGAA 5 cut(s) 49, 221, 348, 579, 967
TspGWI ACGGA 2 cut(s) 204, 711
TspMI CCCGGG 1 cut(s) 1018
TspRI CASTG 1 cut(s) 405
XapI RAATTY 3 cut(s) 348, 636, 841
XceI RCATGY 1 cut(s) 479
XmaI CCCGGG 1 cut(s) 1018
XmnI GAANNNNTTC 2 cut(s) 411, 974
XspI CTAG 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.