RLG00000018461

mediator of RNA polymerase II transcription subunit

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
30069546 .. 30071526
1981 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018461

Sequence Viewer

Length: 1017 bp
ATGGATTACGACGACTTGAGGACGATTGTGCACACCTCAGGGGTGGACGTGTTCACGTTCATCGAGGCGGCGATCGCGGTGGCTGCGGTGGATGAGGGCAGCGAGCTCAGGCGCCGGAGAGACGGTATCGTGGAGCGTCTCTACGGCGCCACGTGTGCTCCTCCGCCTCCGCCGCGGTGCCTGAACTGCGACGGAGATGGGATGAACGCGAACCAGCAGCCCAAAGGAGTTTCGCCGGCGACGCCGCAGTCGGTGGATAACAGAGACGAGGAGGATGAGGAGGAGGAGGAAGAGGAGTTGGATCCCTGCGCTGGATTGTTCGATGATGAGCCCAAGAAGATTCTTGATATCAAGAAGCAGCTTGAGGATCCTGATCAGTCTGAGGATTCTCTGGTTGAATTGCTTCAAAGCCTAGTCGACATGGATATATCATTCCAAGACCTCAAGGATACTGATATTGGGAGGCAAGTGAGTCAATTACGCAAGCAACATCAAGGCGAGGTTGTTCGGAAATTGGCGAAGCAACTTGTCAGGAAATGGAAAGGTATTGTGGATGAATGGGTGAAGTTACATGGAGAAGAGCCAACCAATTCAGTCATGGTTGACGGAGACTCACCACAGCAGAAAATTCACCAGAATGGTCATCATCAGGTGCCTGATTTTGGTTACTCCCCAAATCCTCATAATGGAAGTTCTGGGTCAGACAAGAACAATTCAGAACCAGAACGCAAGCCCAAGGTGATTCCTAGGAGAGAAGTTCCACCAAAACCAATCCAATCTGTGTCTGCTGCTCAAAATAGACAGAGAGAACAGAGGGAAAGAAATTTTGACGCTGACGATAAACTGGCTTCAGCACGAAAACGACTTCAAGCGAATTACAAAGAAGCTGAGAATGCCAAAAGGCAAAGAACAATTCAAGTGATGGACATCCATGAGATACCAAAACCAAAGAACTCCTTCATCGCCAAGAACAAAGGCGGAGGAGGTAGCGGTTCTCACCAGGGCAGGCATTGGTGA

Protein Analysis

339

Amino Acids

38.01

Weight (kDa)

5.42

Isoelectric Point (pI)

54.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Med26 PF08711 133 - 184 1.9e-12 TFIIS helical bundle-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 247
AccB1I GGYRCC 4 cut(s) 111, 146, 177, 652
AccI GTMKAC 1 cut(s) 417
AccII CGCG 3 cut(s) 77, 175, 209
AclWI GGATC 4 cut(s) 296, 309, 362, 375
AcsI RAATTY 2 cut(s) 627, 823
AcuI CTGAAG 1 cut(s) 834
AcvI CACGTG 1 cut(s) 153
AcyI GRCGYC 3 cut(s) 112, 147, 242
AfiI CCNNNNNNNGG 3 cut(s) 311, 662, 686
AflIII ACRYGT 2 cut(s) 48, 152
AgsI TTSAA 4 cut(s) 398, 407, 869, 917
AjiI CACGTC 1 cut(s) 49
AjnI CCWGG 1 cut(s) 999
AluBI AGCT 3 cut(s) 106, 361, 887
AluI AGCT 3 cut(s) 106, 361, 887
Alw21I GWGCWC 3 cut(s) 33, 108, 160
Alw26I GTCTC 4 cut(s) 114, 143, 258, 603
Alw44I GTGCAC 1 cut(s) 29
AlwI GGATC 4 cut(s) 296, 309, 362, 375
ApaLI GTGCAC 1 cut(s) 29
ApeKI GCWGC 5 cut(s) 83, 99, 217, 358, 788
ApoI RAATTY 2 cut(s) 627, 823
AsiSI GCGATCGC 1 cut(s) 75
Asp700I GAANNNNTTC 2 cut(s) 402, 956
AspA2I CCTAGG 1 cut(s) 746
AspLEI GCGC 3 cut(s) 114, 149, 311
AsuHPI GGTGA 5 cut(s) 574, 606, 623, 751, 989
AvrII CCTAGG 1 cut(s) 746
AxyI CCTNAGG 1 cut(s) 37
BaeGI GKGCMC 1 cut(s) 33
BamHI GGATCC 2 cut(s) 301, 367
BanI GGYRCC 4 cut(s) 111, 146, 177, 652
BanII GRGCYC 2 cut(s) 108, 333
BbrPI CACGTG 1 cut(s) 153
Bbv12I GWGCWC 3 cut(s) 33, 108, 160
BbvI GCAGC 5 cut(s) 70, 111, 229, 370, 775
BccI CCATC 2 cut(s) 191, 916
BceAI ACGGC 1 cut(s) 160
BciT130I CCWGG 1 cut(s) 1001
BciVI GTATCC 1 cut(s) 442
BclI TGATCA 1 cut(s) 373
BcoDI GTCTC 4 cut(s) 114, 143, 258, 603
BfaI CTAG 2 cut(s) 413, 747
BfoI RGCGCY 2 cut(s) 115, 150
BfuI GTATCC 1 cut(s) 442
BisI GCNGC 8 cut(s) 69, 84, 100, 173, 218, 245, 359, 789
BlnI CCTAGG 1 cut(s) 746
BlsI GCNGC 8 cut(s) 70, 85, 101, 174, 219, 246, 360, 790
Bme1390I CCNGG 1 cut(s) 1001
BmgBI CACGTC 1 cut(s) 49
BmiI GGNNCC 6 cut(s) 113, 148, 179, 303, 369, 654
BmrFI CCNGG 1 cut(s) 1001
Bpu10I CCTNAGC 1 cut(s) 107
BpuEI CTTGAG 3 cut(s) 37, 383, 428
BsaAI YACGTR 1 cut(s) 153
BsaBI GATNNNNATC 2 cut(s) 372, 926
BsaHI GRCGYC 3 cut(s) 112, 147, 242
BsaJI CCNNGG 4 cut(s) 173, 735, 746, 1000
BsaXI ACNNNNNCTCC 4 cut(s) 109, 139, 142, 172
Bsc4I CCNNNNNNNGG 3 cut(s) 311, 662, 686
Bse118I RCCGGY 1 cut(s) 235
Bse1I ACTGG 1 cut(s) 849
Bse21I CCTNAGG 1 cut(s) 37
Bse8I GATNNNNATC 2 cut(s) 372, 926
BseBI CCWGG 1 cut(s) 1001
BseDI CCNNGG 4 cut(s) 173, 735, 746, 1000
BseGI GGATG 5 cut(s) 97, 207, 280, 559, 927
BseJI GATNNNNATC 2 cut(s) 372, 926
BseLI CCNNNNNNNGG 3 cut(s) 311, 662, 686
BseMII CTCAG 4 cut(s) 51, 121, 372, 879
BseNI ACTGG 1 cut(s) 849
BseRI GAGGAG 7 cut(s) 150, 284, 293, 296, 299, 308, 996
BseSI GKGCMC 1 cut(s) 33
BseXI GCAGC 5 cut(s) 70, 111, 229, 370, 775
Bsh1236I CGCG 3 cut(s) 77, 175, 209
Bsh1285I CGRYCG 1 cut(s) 75
BshNI GGYRCC 4 cut(s) 111, 146, 177, 652
BsiEI CGRYCG 1 cut(s) 75
BsiHKAI GWGCWC 3 cut(s) 33, 108, 160
BsiSI CCGG 2 cut(s) 115, 236
BslI CCNNNNNNNGG 3 cut(s) 311, 662, 686
BsmAI GTCTC 4 cut(s) 114, 143, 258, 603
BsmBI CGTCTC 3 cut(s) 114, 143, 258
BsmI GAATGC 1 cut(s) 898
Bsp1286I GDGCHC 4 cut(s) 33, 108, 160, 333
Bsp143I GATC 4 cut(s) 72, 301, 367, 373
BspCNI CTCAG 4 cut(s) 50, 120, 373, 880
BspFNI CGCG 3 cut(s) 77, 175, 209
BspLI GGNNCC 6 cut(s) 113, 148, 179, 303, 369, 654
BspPI GGATC 4 cut(s) 296, 309, 362, 375
BspQI GCTCTTC 1 cut(s) 573
BspT107I GGYRCC 4 cut(s) 111, 146, 177, 652
BsrFI RCCGGY 1 cut(s) 235
BsrI ACTGG 1 cut(s) 849
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 4 cut(s) 173, 735, 746, 1000
BssMI GATC 4 cut(s) 72, 301, 367, 373
BssNI GRCGYC 3 cut(s) 112, 147, 242
BssT1I CCWWGG 2 cut(s) 735, 746
Bst2UI CCWGG 1 cut(s) 1001
Bst4CI ACNGT 1 cut(s) 125
Bst6I CTCTTC 2 cut(s) 285, 573
BstACI GRCGYC 3 cut(s) 112, 147, 242
BstBAI YACGTR 1 cut(s) 153
BstC8I GCNNGC 5 cut(s) 104, 237, 485, 731, 1007
BstDEI CTNAG 4 cut(s) 37, 107, 381, 888
BstDSI CCRYGG 1 cut(s) 173
BstF5I GGATG 5 cut(s) 97, 207, 280, 559, 927
BstFNI CGCG 3 cut(s) 77, 175, 209
BstH2I RGCGCY 2 cut(s) 115, 150
BstHHI GCGC 3 cut(s) 114, 149, 311
BstKTI GATC 4 cut(s) 75, 304, 370, 376
BstMAI GTCTC 4 cut(s) 114, 143, 258, 603
BstMBI GATC 4 cut(s) 72, 301, 367, 373
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 7 cut(s) 74, 83, 155, 172, 186, 241, 893
BstNI CCWGG 1 cut(s) 1001
BstSCI CCNGG 1 cut(s) 999
BstSLI GKGCMC 1 cut(s) 33
BstUI CGCG 3 cut(s) 77, 175, 209
BstV1I GCAGC 5 cut(s) 70, 111, 229, 370, 775
BstX2I RGATCY 2 cut(s) 301, 367
BstYI RGATCY 2 cut(s) 301, 367
Bsu36I CCTNAGG 1 cut(s) 37
BsuI GTATCC 1 cut(s) 442
BtgI CCRYGG 1 cut(s) 173
BtgZI GCGATG 1 cut(s) 946
BtrI CACGTC 1 cut(s) 49
BtsCI GGATG 5 cut(s) 97, 207, 280, 559, 927
Cac8I GCNNGC 5 cut(s) 104, 237, 485, 731, 1007
CfoI GCGC 3 cut(s) 114, 149, 311
Cfr10I RCCGGY 1 cut(s) 235
Cfr42I CCGCGG 1 cut(s) 176
CseI GACGC 3 cut(s) 125, 250, 839
CviAII CATG 4 cut(s) 421, 572, 598, 932
DdeI CTNAG 4 cut(s) 37, 107, 381, 888
DinI GGCGCC 2 cut(s) 113, 148
DpnI GATC 4 cut(s) 74, 303, 369, 375
DpnII GATC 4 cut(s) 72, 301, 367, 373
DrdI GACNNNNNNGTC 1 cut(s) 247
DseDI GACNNNNNNGTC 1 cut(s) 247
Eam1104I CTCTTC 2 cut(s) 285, 573
EarI CTCTTC 2 cut(s) 285, 573
EciI GGCGGA 3 cut(s) 153, 159, 993
Ecl136II GAGCTC 1 cut(s) 106
Eco130I CCWWGG 2 cut(s) 735, 746
Eco24I GRGCYC 2 cut(s) 108, 333
Eco32I GATATC 1 cut(s) 349
Eco53kI GAGCTC 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 834
Eco72I CACGTG 1 cut(s) 153
Eco81I CCTNAGG 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 999
EcoRV GATATC 1 cut(s) 349
EcoT14I CCWWGG 2 cut(s) 735, 746
EcoT38I GRGCYC 2 cut(s) 108, 333
EgeI GGCGCC 2 cut(s) 113, 148
EheI GGCGCC 2 cut(s) 113, 148
ErhI CCWWGG 2 cut(s) 735, 746
Esp3I CGTCTC 3 cut(s) 114, 143, 258
FaeI CATG 4 cut(s) 424, 575, 601, 935
FaiI YATR 6 cut(s) 422, 428, 573, 599, 684, 933
FalI AAGNNNNNCTT 2 cut(s) 941, 973
FatI CATG 4 cut(s) 420, 571, 597, 931
FbaI TGATCA 1 cut(s) 373
FblI GTMKAC 1 cut(s) 417
Fnu4HI GCNGC 8 cut(s) 69, 84, 100, 173, 218, 245, 359, 789
FokI GGATG 5 cut(s) 104, 214, 287, 566, 914
FriOI GRGCYC 2 cut(s) 108, 333
Fsp4HI GCNGC 8 cut(s) 69, 84, 100, 173, 218, 245, 359, 789
FspBI CTAG 2 cut(s) 413, 747
GlaI GCGC 3 cut(s) 113, 148, 310
GluI GCNGC 8 cut(s) 69, 84, 100, 173, 218, 245, 359, 789
HaeII RGCGCY 2 cut(s) 115, 150
HapII CCGG 2 cut(s) 115, 236
HgaI GACGC 3 cut(s) 125, 250, 839
HhaI GCGC 3 cut(s) 114, 149, 311
Hin1I GRCGYC 3 cut(s) 112, 147, 242
Hin1II CATG 4 cut(s) 424, 575, 601, 935
Hin6I GCGC 3 cut(s) 112, 147, 309
HinP1I GCGC 3 cut(s) 112, 147, 309
HincII GTYRAC 2 cut(s) 418, 604
HindII GTYRAC 2 cut(s) 418, 604
HinfI GANTC 5 cut(s) 340, 386, 472, 611, 742
HpaII CCGG 2 cut(s) 115, 236
HphI GGTGA 5 cut(s) 574, 606, 623, 751, 989
Hpy166II GTNNAC 5 cut(s) 31, 46, 54, 418, 604
Hpy188I TCNGA 4 cut(s) 382, 510, 703, 718
Hpy188III TCNNGA 4 cut(s) 344, 352, 371, 532
Hpy8I GTNNAC 5 cut(s) 31, 46, 54, 418, 604
Hpy99I CGWCG 3 cut(s) 14, 194, 244
HpyAV CCTTC 1 cut(s) 967
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4IV ACGT 3 cut(s) 48, 56, 152
HpyCH4V TGCA 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 7 cut(s) 74, 83, 155, 172, 186, 241, 893
HpyF3I CTNAG 4 cut(s) 37, 107, 381, 888
HpySE526I ACGT 3 cut(s) 48, 56, 152
Hsp92I GRCGYC 3 cut(s) 112, 147, 242
Hsp92II CATG 4 cut(s) 424, 575, 601, 935
HspAI GCGC 3 cut(s) 112, 147, 309
KasI GGCGCC 2 cut(s) 111, 146
KroI GCCGGC 1 cut(s) 235
KroNI GCCGGC 1 cut(s) 237
Ksp22I TGATCA 1 cut(s) 373
KspI CCGCGG 1 cut(s) 176
Kzo9I GATC 4 cut(s) 72, 301, 367, 373
LguI GCTCTTC 1 cut(s) 573
LmnI GCTCC 2 cut(s) 133, 163
Lsp1109I GCAGC 5 cut(s) 70, 111, 229, 370, 775
MaeI CTAG 2 cut(s) 413, 747
MaeII ACGT 3 cut(s) 48, 56, 152
MaeIII GTNAC 2 cut(s) 567, 665
MalI GATC 4 cut(s) 74, 303, 369, 375
MboI GATC 4 cut(s) 72, 301, 367, 373
MboII GAAGA 3 cut(s) 302, 349, 590
MflI RGATCY 2 cut(s) 301, 367
MhlI GDGCHC 4 cut(s) 33, 108, 160, 333
MluCI AATT 9 cut(s) 398, 476, 512, 589, 627, 712, 823, 874, 912
Mly113I GGCGCC 2 cut(s) 112, 147
MlyI GAGTC 2 cut(s) 481, 605
MmeI TCCRAC 1 cut(s) 279
MreI CGCCGGCG 1 cut(s) 235
MroNI GCCGGC 1 cut(s) 235
MroXI GAANNNNTTC 2 cut(s) 402, 956
MslI CAYNNNNRTG 1 cut(s) 636
MspA1I CMGCKG 1 cut(s) 175
MspI CCGG 2 cut(s) 115, 236
MspR9I CCNGG 1 cut(s) 1001
Mva1269I GAATGC 1 cut(s) 898
MvaI CCWGG 1 cut(s) 1001
MvnI CGCG 3 cut(s) 77, 175, 209
MwoI GCNNNNNNNGC 7 cut(s) 74, 83, 155, 172, 186, 241, 893
NaeI GCCGGC 1 cut(s) 237
NarI GGCGCC 2 cut(s) 112, 147
NdeII GATC 4 cut(s) 72, 301, 367, 373
NgoMIV GCCGGC 1 cut(s) 235
NlaIII CATG 4 cut(s) 424, 575, 601, 935
NlaIV GGNNCC 6 cut(s) 113, 148, 179, 303, 369, 654
PciSI GCTCTTC 1 cut(s) 573
PctI GAATGC 1 cut(s) 898
PdiI GCCGGC 1 cut(s) 237
PdmI GAANNNNTTC 2 cut(s) 402, 956
PfeI GAWTC 3 cut(s) 340, 386, 742
PkrI GCNGC 8 cut(s) 70, 85, 101, 174, 219, 246, 360, 790
Ple19I CGATCG 1 cut(s) 75
PleI GAGTC 2 cut(s) 480, 605
PluTI GGCGCC 2 cut(s) 115, 150
PmaCI CACGTG 1 cut(s) 153
PmlI CACGTG 1 cut(s) 153
PpsI GAGTC 2 cut(s) 480, 605
Ppu21I YACGTR 1 cut(s) 153
Psp124BI GAGCTC 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 999
PspCI CACGTG 1 cut(s) 153
PspGI CCWGG 1 cut(s) 999
PspN4I GGNNCC 6 cut(s) 113, 148, 179, 303, 369, 654
PsuI RGATCY 2 cut(s) 301, 367
PvuI CGATCG 1 cut(s) 75
RgaI GCGATCGC 1 cut(s) 75
RseI CAYNNNNRTG 1 cut(s) 636
SacI GAGCTC 1 cut(s) 108
SacII CCGCGG 1 cut(s) 176
SalI GTCGAC 1 cut(s) 416
SapI GCTCTTC 1 cut(s) 573
SatI GCNGC 8 cut(s) 69, 84, 100, 173, 218, 245, 359, 789
Sau3AI GATC 4 cut(s) 72, 301, 367, 373
SchI GAGTC 2 cut(s) 481, 605
ScrFI CCNGG 1 cut(s) 1001
SduI GDGCHC 4 cut(s) 33, 108, 160, 333
SfaAI GCGATCGC 1 cut(s) 75
SfoI GGCGCC 2 cut(s) 113, 148
Sfr303I CCGCGG 1 cut(s) 176
SgfI GCGATCGC 1 cut(s) 75
SgrAI CRCCGGYG 1 cut(s) 235
SgrBI CCGCGG 1 cut(s) 176
SmiMI CAYNNNNRTG 1 cut(s) 636
SmlI CTYRAG 3 cut(s) 16, 362, 443
SmoI CTYRAG 3 cut(s) 16, 362, 443
Sse9I AATT 9 cut(s) 398, 476, 512, 589, 627, 712, 823, 874, 912
SspDI GGCGCC 2 cut(s) 111, 146
SspMI CTAG 2 cut(s) 413, 747
SstI GAGCTC 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 999
StyI CCWWGG 2 cut(s) 735, 746
TaaI ACNGT 1 cut(s) 125
TaiI ACGT 3 cut(s) 51, 59, 155
TaqI TCGA 3 cut(s) 63, 321, 417
TasI AATT 9 cut(s) 398, 476, 512, 589, 627, 712, 823, 874, 912
TauI GCSGC 3 cut(s) 71, 175, 247
TfiI GAWTC 3 cut(s) 340, 386, 742
TseI GCWGC 5 cut(s) 83, 99, 217, 358, 788
TspDTI ATGAA 4 cut(s) 49, 218, 570, 949
TspGWI ACGGA 2 cut(s) 207, 621
VneI GTGCAC 1 cut(s) 29
XapI RAATTY 2 cut(s) 627, 823
XcmI CCANNNNNNNNNTGG 1 cut(s) 595
XmaJI CCTAGG 1 cut(s) 746
XmiI GTMKAC 1 cut(s) 417
XmnI GAANNNNTTC 2 cut(s) 402, 956
XspI CTAG 2 cut(s) 413, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.