Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004432

Physical Location & Seq

Genomic Coordinates Reverse (-)

18618735 .. 18623176

Gene Structure 4442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G180300.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGACCATGACGACTTGCGGACCATCTTAGAAACCTCGGGAGTGGATGTGTGGACGTTCATTGACACCGCCATTGTGGTAGCTTCGGTTGATTATGGCACCGAGCTCAAGCACCGGAGGGATGGCATTGTCGAGCGCCTCTACGCCACAACTTGCATGCCACCTCGGTGCCCGAACTGTGATACTGATGGGCCCAATGGGAACCAACCCAAAGGAGTTTCACCGTACACGCCGCAGTTCGTTGATAGAGATGACGATGAGGAGGAGGACAAGGAGGGGTTGGATCCATACGGAGGGTTGTTCGATGATGAGCAGAAGAACATTCTAGAAATCAAGAAGCAGCTTGAGGATCCACATCAGTCTGAGGATTCTTTGGTTGAGTTGCTTCAAAGTCTAGCAGATATGGAAATATCATTCCAAGAACTCAAGGAGGCCGATATTGGAAGGCATGTGAGTCAATTGCGGAAGCAGCATCCAAGTGATGTTGTTAGGAGATTGGCAAAGCAAGTTGTCAGGAAATGGAAAGGTATTGTGGATGAATGGGTGAAGTTACATGGAGAACTGCCGTCTTCTTCGGCCATGGTTGATGAAGATTCGCCCCAGCAGAAAATTCCCCAAAATGGTCTTCACCAGGTTCCTGATTTTGCGTACTCTCCAAATCCTCACAATGGGAGTTCTGGATCAGATAAGAACAATTCAGAACCAGAACGCAAGCCAAAGGCAGTTCCTAGGAGAGAAGCTCCACCAAAACCAGCACAATCAACCCCTATGTCTGCTTCTGCTGCTCAAAATAGACAGAGAGAACAGAAGGAAAGCAATTTTGACAATGATAGATTGGCTTCTGCAAGAAAACGACTTCAGGCGAATTACAAAGAAGCTGAAAATGCCAAAAAGCAGAGAACAATTCAAGTAATGGACATCCATGACATACCAAAACCAAAGAATTCTTTCATTGCAAAGAACAAAGGTGGAGGAGGAAGTGGTTCTCATCAAGGCAGGCATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006354 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0018130 GO:0019438 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0070449 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med26

Protein Analysis

336

Amino Acids

37.68

Weight (kDa)

5.72

Isoelectric Point (pI)

49.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09850 AT5G09850 AT5G09850 AT5G09850 AT5G09850
fragaria_vesca	FvH4_1g23670 FvH4_1g23670 FvH4_1g23670 FvH4_1g23670
malus_domestica	MD01G1024900.v1.1 MD15G1319400.v1.1
prunus_persica	Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1
pyrus_communis	pycom01g05280 pycom15g29740
rosa_chinensis	RchiOBHm_Chr2g0119271
rosa_laevigata	RLG00000018461
rosa_multiflora	Rmu_co8400383.1_g000001 Rmu_sc0002788.1_g000002 Rmu_ssc0000264.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124360
rosa_rugosa	Rorug02G0221400 Rorug02G0221400
rosa_samantha	Rh2AG279500 Rh2BG290200 Rh2DG285500 Rh2DG304500
rosa_wichuraiana	Rw2G022230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	98, 168
AciI	CCGC	4 cut(s)	19, 69, 233, 463
AclWI	GGATC	5 cut(s)	278, 291, 344, 357, 688
AcoI	YGGCCR	1 cut(s)	576
AcsI	RAATTY	2 cut(s)	609, 943
AcuI	CTGAAG	1 cut(s)	842
AfaI	GTAC	2 cut(s)	227, 650
AfiI	CCNNNNNNNGG	3 cut(s)	293, 620, 668
AgsI	TTSAA	2 cut(s)	389, 908
AjnI	CCWGG	1 cut(s)	630
AjuI	GAANNNNNNNTTGG	2 cut(s)	609, 641
AleI	CACNNNNGTG	1 cut(s)	166
AluBI	AGCT	5 cut(s)	83, 106, 343, 740, 878
AluI	AGCT	5 cut(s)	83, 106, 343, 740, 878
Alw21I	GWGCWC	1 cut(s)	108
AlwI	GGATC	5 cut(s)	278, 291, 344, 357, 688
Ama87I	CYCGRG	1 cut(s)	37
AoxI	GGCC	3 cut(s)	191, 432, 576
ApaI	GGGCCC	1 cut(s)	195
ApeKI	GCWGC	3 cut(s)	340, 469, 782
ApoI	RAATTY	2 cut(s)	609, 943
Asp700I	GAANNNNTTC	2 cut(s)	947, 982
AspA2I	CCTAGG	1 cut(s)	728
AspLEI	GCGC	1 cut(s)	138
AspS9I	GGNCC	4 cut(s)	4, 21, 191, 192
AsuHPI	GGTGA	3 cut(s)	213, 556, 620
AvaI	CYCGRG	1 cut(s)	37
AvaII	GGWCC	2 cut(s)	4, 21
AvrII	CCTAGG	1 cut(s)	728
BaeGI	GKGCMC	2 cut(s)	173, 195
BamHI	GGATCC	2 cut(s)	283, 349
BanI	GGYRCC	2 cut(s)	98, 168
BanII	GRGCYC	2 cut(s)	108, 195
BbsI	GAAGAC	2 cut(s)	561, 617
Bbv12I	GWGCWC	1 cut(s)	108
BbvI	GCAGC	3 cut(s)	352, 481, 769
BccI	CCATC	3 cut(s)	32, 116, 182
BceAI	ACGGC	1 cut(s)	550
BciT130I	CCWGG	1 cut(s)	632
BfaI	CTAG	3 cut(s)	326, 395, 729
BfoI	RGCGCY	1 cut(s)	139
BisI	GCNGC	4 cut(s)	233, 341, 470, 783
BlnI	CCTAGG	1 cut(s)	728
BlsI	GCNGC	4 cut(s)	234, 342, 471, 784
Bme1390I	CCNGG	1 cut(s)	632
Bme18I	GGWCC	2 cut(s)	4, 21
BmeT110I	CYCGRG	1 cut(s)	37
BmgT120I	GGNCC	4 cut(s)	4, 21, 191, 192
BmiI	GGNNCC	7 cut(s)	100, 170, 193, 203, 285, 351, 636
BmrFI	CCNGG	1 cut(s)	632
BmsI	GCATC	1 cut(s)	481
BpiI	GAAGAC	2 cut(s)	561, 617
BplI	GAGNNNNNCTC	2 cut(s)	724, 756
BpuEI	CTTGAG	3 cut(s)	92, 365, 410
BsaBI	GATNNNNATC	1 cut(s)	354
BsaJI	CCNNGG	4 cut(s)	36, 164, 579, 728
BsaWI	WCCGGW	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	3 cut(s)	293, 620, 668
Bse3DI	GCAATG	1 cut(s)	951
Bse8I	GATNNNNATC	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	632
BseDI	CCNNGG	4 cut(s)	36, 164, 579, 728
BseGI	GGATG	5 cut(s)	52, 127, 472, 541, 918
BseJI	GATNNNNATC	1 cut(s)	354
BseLI	CCNNNNNNNGG	3 cut(s)	293, 620, 668
BseMI	GCAATG	1 cut(s)	951
BseMII	CTCAG	1 cut(s)	354
BseRI	GAGGAG	3 cut(s)	275, 278, 987
BseSI	GKGCMC	2 cut(s)	173, 195
BseXI	GCAGC	3 cut(s)	352, 481, 769
BseYI	CCCAGC	1 cut(s)	600
BshFI	GGCC	3 cut(s)	193, 434, 578
BshNI	GGYRCC	2 cut(s)	98, 168
BsiHKAI	GWGCWC	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	115
BslI	CCNNNNNNNGG	3 cut(s)	293, 620, 668
BsnI	GGCC	3 cut(s)	193, 434, 578
BsoBI	CYCGRG	1 cut(s)	37
Bsp120I	GGGCCC	1 cut(s)	191
Bsp1286I	GDGCHC	3 cut(s)	108, 173, 195
Bsp143I	GATC	3 cut(s)	283, 349, 680
Bsp19I	CCATGG	1 cut(s)	579
BspACI	CCGC	4 cut(s)	19, 69, 233, 463
BspANI	GGCC	3 cut(s)	193, 434, 578
BspCNI	CTCAG	1 cut(s)	355
BspLI	GGNNCC	7 cut(s)	100, 170, 193, 203, 285, 351, 636
BspPI	GGATC	5 cut(s)	278, 291, 344, 357, 688
BspT107I	GGYRCC	2 cut(s)	98, 168
BsrDI	GCAATG	1 cut(s)	951
BssECI	CCNNGG	4 cut(s)	36, 164, 579, 728
BssMI	GATC	3 cut(s)	283, 349, 680
BssT1I	CCWWGG	2 cut(s)	579, 728
Bst2UI	CCWGG	1 cut(s)	632
Bst4CI	ACNGT	2 cut(s)	179, 225
BstC8I	GCNNGC	3 cut(s)	158, 713, 998
BstDEI	CTNAG	2 cut(s)	28, 363
BstDSI	CCRYGG	1 cut(s)	579
BstF5I	GGATG	5 cut(s)	52, 127, 472, 541, 918
BstH2I	RGCGCY	1 cut(s)	139
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	3 cut(s)	286, 352, 683
BstMBI	GATC	3 cut(s)	283, 349, 680
BstMWI	GCNNNNNNNGC	3 cut(s)	469, 782, 884
BstNI	CCWGG	1 cut(s)	632
BstNSI	RCATGY	2 cut(s)	160, 452
BstSCI	CCNGG	1 cut(s)	630
BstSLI	GKGCMC	2 cut(s)	173, 195
BstV1I	GCAGC	3 cut(s)	352, 481, 769
BstV2I	GAAGAC	2 cut(s)	561, 617
BstX2I	RGATCY	2 cut(s)	283, 349
BstYI	RGATCY	2 cut(s)	283, 349
BsuRI	GGCC	3 cut(s)	193, 434, 578
BtgI	CCRYGG	1 cut(s)	579
BtsCI	GGATG	5 cut(s)	52, 127, 472, 541, 918
Cac8I	GCNNGC	3 cut(s)	158, 713, 998
CfoI	GCGC	1 cut(s)	138
Cfr13I	GGNCC	4 cut(s)	4, 21, 191, 192
CsiI	ACCWGGT	1 cut(s)	630
Csp6I	GTAC	2 cut(s)	226, 649
CviAII	CATG	6 cut(s)	8, 157, 449, 554, 580, 923
CviQI	GTAC	2 cut(s)	226, 649
DdeI	CTNAG	2 cut(s)	28, 363
DpnI	GATC	3 cut(s)	285, 351, 682
DpnII	GATC	3 cut(s)	283, 349, 680
EaeI	YGGCCR	1 cut(s)	576
Ecl136II	GAGCTC	1 cut(s)	106
Eco130I	CCWWGG	2 cut(s)	579, 728
Eco24I	GRGCYC	2 cut(s)	108, 195
Eco47I	GGWCC	2 cut(s)	4, 21
Eco53kI	GAGCTC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	842
Eco88I	CYCGRG	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	106
EcoRI	GAATTC	1 cut(s)	943
EcoRII	CCWGG	1 cut(s)	630
EcoT14I	CCWWGG	2 cut(s)	579, 728
EcoT38I	GRGCYC	2 cut(s)	108, 195
ErhI	CCWWGG	2 cut(s)	579, 728
FaeI	CATG	6 cut(s)	11, 160, 452, 557, 583, 926
FatI	CATG	6 cut(s)	7, 156, 448, 553, 579, 922
Fnu4HI	GCNGC	4 cut(s)	233, 341, 470, 783
FokI	GGATG	5 cut(s)	59, 134, 459, 548, 905
FriOI	GRGCYC	2 cut(s)	108, 195
Fsp4HI	GCNGC	4 cut(s)	233, 341, 470, 783
FspBI	CTAG	3 cut(s)	326, 395, 729
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	4 cut(s)	233, 341, 470, 783
GsaI	CCCAGC	1 cut(s)	604
HaeII	RGCGCY	1 cut(s)	139
HaeIII	GGCC	3 cut(s)	193, 434, 578
HapII	CCGG	1 cut(s)	115
HhaI	GCGC	1 cut(s)	138
Hin1II	CATG	6 cut(s)	11, 160, 452, 557, 583, 926
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HinfI	GANTC	3 cut(s)	368, 454, 593
HpaII	CCGG	1 cut(s)	115
HphI	GGTGA	3 cut(s)	213, 556, 620
Hpy166II	GTNNAC	2 cut(s)	54, 228
Hpy188I	TCNGA	3 cut(s)	364, 685, 700
Hpy188III	TCNNGA	6 cut(s)	39, 326, 334, 514, 638, 678
Hpy8I	GTNNAC	2 cut(s)	54, 228
HpyAV	CCTTC	2 cut(s)	438, 802
HpyCH4III	ACNGT	2 cut(s)	179, 225
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	3 cut(s)	156, 845, 956
HpyF10VI	GCNNNNNNNGC	3 cut(s)	469, 782, 884
HpyF3I	CTNAG	2 cut(s)	28, 363
HpySE526I	ACGT	1 cut(s)	56
Hsp92II	CATG	6 cut(s)	11, 160, 452, 557, 583, 926
HspAI	GCGC	1 cut(s)	136
Kzo9I	GATC	3 cut(s)	283, 349, 680
LmnI	GCTCC	1 cut(s)	745
Lsp1109I	GCAGC	3 cut(s)	352, 481, 769
LweI	GCATC	1 cut(s)	481
MabI	ACCWGGT	1 cut(s)	630
MaeI	CTAG	3 cut(s)	326, 395, 729
MaeII	ACGT	1 cut(s)	56
MaeIII	GTNAC	1 cut(s)	549
MalI	GATC	3 cut(s)	285, 351, 682
MboI	GATC	3 cut(s)	283, 349, 680
MboII	GAAGA	5 cut(s)	328, 561, 564, 602, 617
MfeI	CAATTG	1 cut(s)	458
MflI	RGATCY	2 cut(s)	283, 349
MhlI	GDGCHC	3 cut(s)	108, 173, 195
MluCI	AATT	7 cut(s)	458, 609, 694, 817, 865, 903, 943
MlyI	GAGTC	1 cut(s)	463
MmeI	TCCRAC	1 cut(s)	261
MroXI	GAANNNNTTC	2 cut(s)	947, 982
MslI	CAYNNNNRTG	2 cut(s)	166, 477
MspI	CCGG	1 cut(s)	115
MspR9I	CCNGG	1 cut(s)	632
MunI	CAATTG	1 cut(s)	458
MvaI	CCWGG	1 cut(s)	632
MwoI	GCNNNNNNNGC	3 cut(s)	469, 782, 884
NcoI	CCATGG	1 cut(s)	579
NdeII	GATC	3 cut(s)	283, 349, 680
NlaIII	CATG	6 cut(s)	11, 160, 452, 557, 583, 926
NlaIV	GGNNCC	7 cut(s)	100, 170, 193, 203, 285, 351, 636
NspI	RCATGY	2 cut(s)	160, 452
OliI	CACNNNNGTG	1 cut(s)	166
PaeI	GCATGC	1 cut(s)	160
PdmI	GAANNNNTTC	2 cut(s)	947, 982
PfeI	GAWTC	2 cut(s)	368, 593
PkrI	GCNGC	4 cut(s)	234, 342, 471, 784
PleI	GAGTC	1 cut(s)	462
PpsI	GAGTC	1 cut(s)	462
Psp124BI	GAGCTC	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	630
PspFI	CCCAGC	1 cut(s)	600
PspGI	CCWGG	1 cut(s)	630
PspN4I	GGNNCC	7 cut(s)	100, 170, 193, 203, 285, 351, 636
PspOMI	GGGCCC	1 cut(s)	191
PspPI	GGNCC	4 cut(s)	4, 21, 191, 192
PsuI	RGATCY	2 cut(s)	283, 349
RsaI	GTAC	2 cut(s)	227, 650
RsaNI	GTAC	2 cut(s)	226, 649
RseI	CAYNNNNRTG	2 cut(s)	166, 477
SacI	GAGCTC	1 cut(s)	108
SatI	GCNGC	4 cut(s)	233, 341, 470, 783
Sau3AI	GATC	3 cut(s)	283, 349, 680
Sau96I	GGNCC	4 cut(s)	4, 21, 191, 192
SchI	GAGTC	1 cut(s)	463
ScrFI	CCNGG	1 cut(s)	632
SduI	GDGCHC	3 cut(s)	108, 173, 195
SexAI	ACCWGGT	1 cut(s)	630
SfaNI	GCATC	1 cut(s)	481
SinI	GGWCC	2 cut(s)	4, 21
SmiMI	CAYNNNNRTG	2 cut(s)	166, 477
SmlI	CTYRAG	3 cut(s)	107, 344, 425
SmoI	CTYRAG	3 cut(s)	107, 344, 425
SphI	GCATGC	1 cut(s)	160
Sse9I	AATT	7 cut(s)	458, 609, 694, 817, 865, 903, 943
SsiI	CCGC	4 cut(s)	19, 69, 233, 463
SspMI	CTAG	3 cut(s)	326, 395, 729
SstI	GAGCTC	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	630
StyI	CCWWGG	2 cut(s)	579, 728
TaaI	ACNGT	2 cut(s)	179, 225
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	2 cut(s)	132, 303
TasI	AATT	7 cut(s)	458, 609, 694, 817, 865, 903, 943
TauI	GCSGC	1 cut(s)	235
TfiI	GAWTC	2 cut(s)	368, 593
TseI	GCWGC	3 cut(s)	340, 469, 782
TspDTI	ATGAA	4 cut(s)	49, 552, 603, 940
TspGWI	ACGGA	1 cut(s)	306
VpaK11BI	GGWCC	2 cut(s)	4, 21
XapI	RAATTY	2 cut(s)	609, 943
XbaI	TCTAGA	1 cut(s)	325
XceI	RCATGY	2 cut(s)	160, 452
XmaJI	CCTAGG	1 cut(s)	728
XmnI	GAANNNNTTC	2 cut(s)	947, 982
XspI	CTAG	3 cut(s)	326, 395, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.