Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004432

Physical Location & Seq

Genomic Coordinates Forward (+)

33062499 .. 33066139

Gene Structure 3641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1319400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGACCACGACGACTTCCGGACCATCTTAGAAAGCTCGGGAGTGGATATATGGACGTTCATGGACACTGCCATAGCTGTCGCTTTGGCCGATTATGGCACTGAGCTCAAGCACCGGAGGGATGGCATTGTCGAGCGCCTCTATGCCACAGCTTCCGTTCCACCTCAATGCCCGAACTGCAATGCTGATGGGCCTAATGGGCCCAATGTTAACCAGCCCAAAGCAGTTTCACCGTACACTCCGCAGTCTGTTGGTGGAGATGGTGGTGAGGAGGATGAGGAGGAGTTGGATCCCTATGCAGGGTTGTTTGATGATGAGCCAAAGAATATTCTAGACATCAAGAAGCATCTTGAGGATCCTTATCAGTCTGAGGATACTCTGGTTGAGTTGCTTCAAAGTCTAGCAGATATGGAAATATCAGTCCAAGAACTCAAGGAGGCTGATATTGGAAAGCGTGTGAGTCAATTGCGGAAGCAGCATCCAAGCGATGTTGTTAGGAGATTGGCAAAGCAAATTATCAATAAATGGAAAGGTATTGTGAATGAATGGGTCAAGTTACATGGAGAACAACCATCATCTTCAACAATGGTTGATGAAGACTCACCGCAGCAGAAAATTCCCCAAAATGGCCTTCACCAGGTTCCTGATTTTGCATACTCTCCAAATCCTCACAATGGGAGTTCTGGGTCAGACAAGAACTATTCAGAACCAGAACGCAAGCCAAAGGCAGTTCCTAGGAGGATTGCTCCACCAAAACCAAAACCTACACAATGGACCCCTGTGTCTGCTTCTGCTCCTCAAAATAGACAGATGGGGCAGAAGGAAAGCGATTTAGACTCTGATAGATTGGCTTCTGCAAGAAGACGACTTCAGGCAAATTATAGAGAAGCTGAAAATGCCAAAAAGCAGAGAACAATTCAAGTGATGGACATCCATGAGATACCAAAGCCGAAGAATTCTTTCATTGCGAGGAACAAGGGTGGTGGAGGAGGGGGAGGAGGCGGAAGTGGCTCTCATCAAGGCAGGCATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006354 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0018130 GO:0019438 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0070449 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med26

Protein Analysis

345

Amino Acids

38.1

Weight (kDa)

5.85

Isoelectric Point (pI)

55.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med26	PF08711	129 - 180	3.5e-13	TFIIS helical bundle-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09850 AT5G09850 AT5G09850 AT5G09850 AT5G09850
fragaria_vesca	FvH4_1g23670 FvH4_1g23670 FvH4_1g23670 FvH4_1g23670
malus_domestica	MD01G1024900.v1.1 MD15G1319400.v1.1
prunus_persica	Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1
pyrus_communis	pycom01g05280 pycom15g29740
rosa_chinensis	RchiOBHm_Chr2g0119271
rosa_laevigata	RLG00000018461
rosa_multiflora	Rmu_co8400383.1_g000001 Rmu_sc0002788.1_g000002 Rmu_ssc0000264.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124360
rosa_rugosa	Rorug02G0221400 Rorug02G0221400
rosa_samantha	Rh2AG279500 Rh2BG290200 Rh2DG285500 Rh2DG304500
rosa_wichuraiana	Rw2G022230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	781
AccIII	TCCGGA	1 cut(s)	18
AciI	CCGC	4 cut(s)	242, 469, 605, 1002
AclWI	GGATC	4 cut(s)	284, 297, 350, 363
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	2 cut(s)	615, 955
AcuI	CTGAAG	1 cut(s)	854
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	5 cut(s)	299, 300, 626, 637, 674
AgsI	TTSAA	3 cut(s)	395, 582, 920
AjnI	CCWGG	1 cut(s)	636
AjuI	GAANNNNNNNTTGG	2 cut(s)	615, 647
AluBI	AGCT	5 cut(s)	36, 77, 106, 152, 890
AluI	AGCT	5 cut(s)	36, 77, 106, 152, 890
Alw21I	GWGCWC	1 cut(s)	108
AlwI	GGATC	4 cut(s)	284, 297, 350, 363
Ama87I	CYCGRG	1 cut(s)	37
Aor13HI	TCCGGA	1 cut(s)	18
AoxI	GGCC	4 cut(s)	87, 191, 200, 628
ApaI	GGGCCC	1 cut(s)	204
ApeKI	GCWGC	2 cut(s)	475, 607
ApoI	RAATTY	2 cut(s)	615, 955
Asp700I	GAANNNNTTC	1 cut(s)	959
AspA2I	CCTAGG	1 cut(s)	734
AspLEI	GCGC	1 cut(s)	138
AspS9I	GGNCC	6 cut(s)	4, 21, 191, 200, 201, 774
AsuHPI	GGTGA	4 cut(s)	222, 278, 594, 626
AvaI	CYCGRG	1 cut(s)	37
AvaII	GGWCC	3 cut(s)	4, 21, 774
AvrII	CCTAGG	1 cut(s)	734
BaeGI	GKGCMC	1 cut(s)	204
BaeI	ACNNNNGTAYC	2 cut(s)	366, 399
BamHI	GGATCC	2 cut(s)	289, 355
BanII	GRGCYC	2 cut(s)	108, 204
BbsI	GAAGAC	2 cut(s)	603, 868
Bbv12I	GWGCWC	1 cut(s)	108
BbvI	GCAGC	2 cut(s)	487, 619
BccI	CCATC	7 cut(s)	32, 116, 182, 254, 580, 805, 919
BciT130I	CCWGG	1 cut(s)	638
BciVI	GTATCC	1 cut(s)	367
BfaI	CTAG	3 cut(s)	332, 401, 735
BfoI	RGCGCY	1 cut(s)	139
BfuI	GTATCC	1 cut(s)	367
BglI	GCCNNNNNGGC	1 cut(s)	199
BisI	GCNGC	2 cut(s)	476, 608
BlnI	CCTAGG	1 cut(s)	734
BlsI	GCNGC	2 cut(s)	477, 609
Bme1390I	CCNGG	1 cut(s)	638
Bme18I	GGWCC	3 cut(s)	4, 21, 774
BmeT110I	CYCGRG	1 cut(s)	37
BmgT120I	GGNCC	6 cut(s)	4, 21, 191, 200, 201, 774
BmiI	GGNNCC	5 cut(s)	202, 291, 357, 642, 776
BmrFI	CCNGG	1 cut(s)	638
BmsI	GCATC	2 cut(s)	355, 487
BpiI	GAAGAC	2 cut(s)	603, 868
BplI	GAGNNNNNCTC	2 cut(s)	730, 762
BpuEI	CTTGAG	3 cut(s)	92, 371, 416
BsaBI	GATNNNNATC	2 cut(s)	360, 929
BsaJI	CCNNGG	1 cut(s)	734
BsaWI	WCCGGW	2 cut(s)	18, 114
Bsc4I	CCNNNNNNNGG	5 cut(s)	299, 300, 626, 637, 674
Bse3DI	GCAATG	2 cut(s)	187, 963
Bse8I	GATNNNNATC	2 cut(s)	360, 929
BseAI	TCCGGA	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	638
BseDI	CCNNGG	1 cut(s)	734
BseGI	GGATG	4 cut(s)	127, 280, 478, 930
BseJI	GATNNNNATC	2 cut(s)	360, 929
BseLI	CCNNNNNNNGG	5 cut(s)	299, 300, 626, 637, 674
BseMI	GCAATG	2 cut(s)	187, 963
BseMII	CTCAG	2 cut(s)	93, 360
BseRI	GAGGAG	6 cut(s)	284, 293, 296, 786, 1002, 1011
BseSI	GKGCMC	1 cut(s)	204
BseXI	GCAGC	2 cut(s)	487, 619
BshFI	GGCC	4 cut(s)	89, 193, 202, 630
BsiHKAI	GWGCWC	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	37
BsiSI	CCGG	2 cut(s)	19, 115
BslI	CCNNNNNNNGG	5 cut(s)	299, 300, 626, 637, 674
BsnI	GGCC	4 cut(s)	89, 193, 202, 630
BsoBI	CYCGRG	1 cut(s)	37
Bsp120I	GGGCCC	1 cut(s)	200
Bsp1286I	GDGCHC	2 cut(s)	108, 204
Bsp13I	TCCGGA	1 cut(s)	18
Bsp143I	GATC	2 cut(s)	289, 355
BspACI	CCGC	4 cut(s)	242, 469, 605, 1002
BspANI	GGCC	4 cut(s)	89, 193, 202, 630
BspCNI	CTCAG	2 cut(s)	94, 361
BspEI	TCCGGA	1 cut(s)	18
BspLI	GGNNCC	5 cut(s)	202, 291, 357, 642, 776
BspPI	GGATC	4 cut(s)	284, 297, 350, 363
BsrDI	GCAATG	2 cut(s)	187, 963
BssECI	CCNNGG	1 cut(s)	734
BssMI	GATC	2 cut(s)	289, 355
BssT1I	CCWWGG	1 cut(s)	734
Bst2UI	CCWGG	1 cut(s)	638
Bst4CI	ACNGT	1 cut(s)	234
BstC8I	GCNNGC	2 cut(s)	719, 1025
BstDEI	CTNAG	3 cut(s)	28, 102, 369
BstENI	CCTNNNNNAGG	1 cut(s)	635
BstF5I	GGATG	4 cut(s)	127, 280, 478, 930
BstH2I	RGCGCY	1 cut(s)	139
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	2 cut(s)	292, 358
BstMBI	GATC	2 cut(s)	289, 355
BstMWI	GCNNNNNNNGC	5 cut(s)	177, 199, 475, 896, 1008
BstNI	CCWGG	1 cut(s)	638
BstSCI	CCNGG	1 cut(s)	636
BstSLI	GKGCMC	1 cut(s)	204
BstV1I	GCAGC	2 cut(s)	487, 619
BstV2I	GAAGAC	2 cut(s)	603, 868
BstX2I	RGATCY	2 cut(s)	289, 355
BstYI	RGATCY	2 cut(s)	289, 355
BsuI	GTATCC	1 cut(s)	367
BsuRI	GGCC	4 cut(s)	89, 193, 202, 630
BtgZI	GCGATG	1 cut(s)	501
BtsCI	GGATG	4 cut(s)	127, 280, 478, 930
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	2 cut(s)	66, 99
Cac8I	GCNNGC	2 cut(s)	719, 1025
CfoI	GCGC	1 cut(s)	138
Cfr13I	GGNCC	6 cut(s)	4, 21, 191, 200, 201, 774
CsiI	ACCWGGT	1 cut(s)	636
Csp6I	GTAC	1 cut(s)	235
CspCI	CAANNNNNGTGG	2 cut(s)	964, 999
CviAII	CATG	3 cut(s)	61, 560, 935
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	3 cut(s)	28, 102, 369
DpnI	GATC	2 cut(s)	291, 357
DpnII	GATC	2 cut(s)	289, 355
DrdI	GACNNNNNNGTC	1 cut(s)	781
DseDI	GACNNNNNNGTC	1 cut(s)	781
EaeI	YGGCCR	1 cut(s)	87
EciI	GGCGGA	1 cut(s)	1017
Ecl136II	GAGCTC	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	734
Eco24I	GRGCYC	2 cut(s)	108, 204
Eco47I	GGWCC	3 cut(s)	4, 21, 774
Eco53kI	GAGCTC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	854
Eco88I	CYCGRG	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	106
EcoNI	CCTNNNNNAGG	1 cut(s)	635
EcoRI	GAATTC	1 cut(s)	955
EcoRII	CCWGG	1 cut(s)	636
EcoT14I	CCWWGG	1 cut(s)	734
EcoT38I	GRGCYC	2 cut(s)	108, 204
ErhI	CCWWGG	1 cut(s)	734
FaeI	CATG	3 cut(s)	64, 563, 938
FatI	CATG	3 cut(s)	60, 559, 934
Fnu4HI	GCNGC	2 cut(s)	476, 608
FokI	GGATG	4 cut(s)	134, 287, 465, 917
FriOI	GRGCYC	2 cut(s)	108, 204
Fsp4HI	GCNGC	2 cut(s)	476, 608
FspBI	CTAG	3 cut(s)	332, 401, 735
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	2 cut(s)	476, 608
HaeII	RGCGCY	1 cut(s)	139
HaeIII	GGCC	4 cut(s)	89, 193, 202, 630
HapII	CCGG	2 cut(s)	19, 115
HhaI	GCGC	1 cut(s)	138
Hin1II	CATG	3 cut(s)	64, 563, 938
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	3 cut(s)	460, 599, 836
HpaI	GTTAAC	1 cut(s)	211
HpaII	CCGG	2 cut(s)	19, 115
HphI	GGTGA	4 cut(s)	222, 278, 594, 626
Hpy166II	GTNNAC	2 cut(s)	211, 237
Hpy188I	TCNGA	4 cut(s)	370, 691, 706, 841
Hpy188III	TCNNGA	6 cut(s)	19, 39, 332, 340, 350, 644
Hpy8I	GTNNAC	2 cut(s)	211, 237
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	2 cut(s)	641, 814
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	4 cut(s)	180, 299, 653, 857
HpyF10VI	GCNNNNNNNGC	5 cut(s)	177, 199, 475, 896, 1008
HpyF3I	CTNAG	3 cut(s)	28, 102, 369
HpySE526I	ACGT	1 cut(s)	56
Hsp92II	CATG	3 cut(s)	64, 563, 938
HspAI	GCGC	1 cut(s)	136
Kpn2I	TCCGGA	1 cut(s)	18
KspAI	GTTAAC	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	289, 355
LmnI	GCTCC	2 cut(s)	751, 799
Lsp1109I	GCAGC	2 cut(s)	487, 619
LweI	GCATC	2 cut(s)	355, 487
MabI	ACCWGGT	1 cut(s)	636
MaeI	CTAG	3 cut(s)	332, 401, 735
MaeII	ACGT	1 cut(s)	56
MaeIII	GTNAC	1 cut(s)	555
MalI	GATC	2 cut(s)	291, 357
MboI	GATC	2 cut(s)	289, 355
MboII	GAAGA	4 cut(s)	570, 608, 873, 964
MfeI	CAATTG	1 cut(s)	464
MflI	RGATCY	2 cut(s)	289, 355
MhlI	GDGCHC	2 cut(s)	108, 204
MluCI	AATT	6 cut(s)	464, 513, 615, 877, 915, 955
MlyI	GAGTC	3 cut(s)	469, 593, 830
MmeI	TCCRAC	1 cut(s)	267
MroI	TCCGGA	1 cut(s)	18
MroXI	GAANNNNTTC	1 cut(s)	959
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	166
MspI	CCGG	2 cut(s)	19, 115
MspR9I	CCNGG	1 cut(s)	638
MunI	CAATTG	1 cut(s)	464
MvaI	CCWGG	1 cut(s)	638
MwoI	GCNNNNNNNGC	5 cut(s)	177, 199, 475, 896, 1008
NdeII	GATC	2 cut(s)	289, 355
NlaIII	CATG	3 cut(s)	64, 563, 938
NlaIV	GGNNCC	5 cut(s)	202, 291, 357, 642, 776
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	959
PkrI	GCNGC	2 cut(s)	477, 609
PleI	GAGTC	3 cut(s)	468, 593, 830
PpsI	GAGTC	3 cut(s)	468, 593, 830
Psp124BI	GAGCTC	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	636
PspGI	CCWGG	1 cut(s)	636
PspN4I	GGNNCC	5 cut(s)	202, 291, 357, 642, 776
PspOMI	GGGCCC	1 cut(s)	200
PspPI	GGNCC	6 cut(s)	4, 21, 191, 200, 201, 774
PsuI	RGATCY	2 cut(s)	289, 355
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
RseI	CAYNNNNRTG	1 cut(s)	166
SacI	GAGCTC	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	2 cut(s)	476, 608
Sau3AI	GATC	2 cut(s)	289, 355
Sau96I	GGNCC	6 cut(s)	4, 21, 191, 200, 201, 774
SchI	GAGTC	3 cut(s)	469, 593, 830
ScrFI	CCNGG	1 cut(s)	638
SduI	GDGCHC	2 cut(s)	108, 204
SexAI	ACCWGGT	1 cut(s)	636
SfaNI	GCATC	2 cut(s)	355, 487
SfiI	GGCCNNNNNGGCC	1 cut(s)	199
SinI	GGWCC	3 cut(s)	4, 21, 774
SmiMI	CAYNNNNRTG	1 cut(s)	166
SmlI	CTYRAG	3 cut(s)	107, 350, 431
SmoI	CTYRAG	3 cut(s)	107, 350, 431
Sse9I	AATT	6 cut(s)	464, 513, 615, 877, 915, 955
SsiI	CCGC	4 cut(s)	242, 469, 605, 1002
SspI	AATATT	1 cut(s)	328
SspMI	CTAG	3 cut(s)	332, 401, 735
SstI	GAGCTC	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	636
StyI	CCWWGG	1 cut(s)	734
TaaI	ACNGT	1 cut(s)	234
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	1 cut(s)	132
TasI	AATT	6 cut(s)	464, 513, 615, 877, 915, 955
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	2 cut(s)	73, 106
TseI	GCWGC	2 cut(s)	475, 607
TspDTI	ATGAA	4 cut(s)	49, 558, 609, 952
TspGWI	ACGGA	1 cut(s)	145
TspRI	CASTG	2 cut(s)	73, 106
VpaK11BI	GGWCC	3 cut(s)	4, 21, 774
XagI	CCTNNNNNAGG	1 cut(s)	635
XapI	RAATTY	2 cut(s)	615, 955
XbaI	TCTAGA	1 cut(s)	331
XmaJI	CCTAGG	1 cut(s)	734
XmnI	GAANNNNTTC	1 cut(s)	959
XspI	CTAG	3 cut(s)	332, 401, 735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.