Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000218

Physical Location & Seq

Genomic Coordinates Reverse (-)

21411371 .. 21431654

Gene Structure 20284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0221400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4500 bp

ATGATGCAAGGCTTACGCCGAATGGTTCGGCTCGTACACTTGCCGGCTTTTAGGTCTTCTGAGATTCCACCTCGGGTTACGCAGCGTTTTAAAACATTGGGAAAAAAAACAATAATTGAACCCATACACTGGGTGGGACGCCAAGTGGGTTATGTAATTCACTGCAAAAACAACCTTCAAACACTGCAAGGCCGAGCGGAAGAGTTAAAAGCTGCCAGAGAGTCGTTAGAACATGAGGTTGATGAGGCTATTAGAAGAGAAGAACTAGTTGCATGGCGTTTGCAGTATTGCCTAACAAGAGCGGCGCGGGTCGCTGCAGTGACAGACGAACTTTTGAGAGGTGAAAGCCAAGTAGATCTGAAATGTCTCCATGGGTTTTGTCCTAATCTGAAGTACAGTTATCGGCTGGGCAGGAAATCAACAAAATTGATAATGGAGGTTGTTCATCTCCGGGACACACTTTCCACAGTTGAAATTTGGCTTGAGAAGTGGGGTGTATCCACCGGGGAGTACCAGGCTTTTCCATCAAGGACGTCAACTGTTGAGGAAATCATGGGTGAACTGAAGAATTCTAGTGCCCGCAGGATCGGGGTGTGTGGACCTACAGGTGTGGGTAAAACTCTACTTGCCAAAGAAGTTTATAGGCAAGCTAGAGAAGATAAAAAGTTATTTGATAATGTGGTTATCCTATTAGATGTCAAGAAAAATCCAGACCTGGAAGAAATTCAGAGCAAGATTGTTCGTCAGTTAGATATGAAGATTCTTGAGGATGAGAATTTAGATGGAAGAGCAAGTCGTCTACGTGCCAGGATACTAGACAAGAAGATTCTTGTGATTCTGGATGATGTTTGGGAACAAATTGACTTGGAAGCTCTGGGACTCCCAAGTGTTCCTAATTGTAAGATATTGCTGACATCTAAAACAACCTCCTCTGATACAATAATGCGGTACTTCGAGCTCGGCCCTTTAGATACAATAATGCAGTACTTCGAGCTCGGCCCTTTAGATAACAAAGAGGCTAGGTTCCTATTTGAGAAGATGATAGGTGATGATGTTAAAGAAGCAGTTGATATACGAAATGTAGCAAATCAAGTTGCTGATAGATGTAGACGTTTGCCCATATTAATTGTCATAGTTGCAAGCACTTTGAAGAGAATATCTACTTTAACTTCATGGGAAAATGCTTTGGGATGCCTTGAAGAGTTTAATATTACAGATCACAGGATCACACGAGACCCACACTTGGGGATAGAGTGGAGTTACAAACAATTGAATGATGAGGAAGTGAAGCAGTTGTTCTTGCTATGTGGATTTGCAATATGGGGAAAAGATATTTATTTGCCAGCCTTGTTGAAATTTAGTATGGGTTTGGGCCTCTTCAGTAAGGCATACACAATGGAGCAAGCAAAAGATGCATTTCAATCATCGGTTGAAAAACTCAAGGATTTTTATCTACTGACAGACAGTGATGATGATAACAGATCTGTCAGAATGCATGACCTTGTACGTGATGTTGCTAACCAGATTTCATTCCGAGATGGACACATCTTATCATCGGCTGAAGATGGGGGTGACAATGAGTTAAAAGAATGGCTAGATAAGGATTTCTTCAAAAAGTGCAGTATGATATCTCCACAATCCAGTACAGTTCCCGTGCTTTCTGAAGTAACTAGGATACACCCCAAATTAAAAATGCTTTATTTGCACGGTAAAGGTGATAACTTGGTGGAGATGCCATCCAACTTTTTTAGGGAGATTCAGGAACTCAAAATGTTGGATTTAACCAGACTGCATCTGCTGTCACTACCTTCATCTCTTCAGTTCCTGAAGAATATGCATGCCTTATTTTTAAATCAATGCACCTTGGGAGACGTTGCTTTAGTTGGGCAGCTAAGTAACTTGGAAATTCTCAGCTTTTCTCAGTCCAGTGTCAAACAATTGACTAAAGAAATAGGGCATTTGACTCGTCTTCGGTTGTTGGATTTATCTGATTGCTCTGAACTTGAAGTTATTTCACCCAATGTCATATCAAGCTTGGAGAGACTAGAAGACTTGAGAATGAGAAACAGCTTTAACAAGTGGGAGGCTGAAGCTAAAAGAAGCAACGCAAGCCTTTCTGAGCTGAAGTATTTGTCTCAGTTATCCGTATTACAGATACATATTCTGAATGCTGACATTCTTCCAGCAAACTTGTTCTCCCGCAAGTTAGAAAGATTCAATGTTTTTATTGGGGACGTGTGGGTTGAGAGATATACTCGAAAGACCCTACTAATGGTTGAGACTACACTCAACACACTAAAACTCAAGCCCACTACCAGCACCGAAGGATTGGATACAGGACTAAAATTGTTGCTGAAGAGAACAGAAGACTTGTCCTTGGATGGAACGGAGGGTGTCAATGAGATGCTCGATGAATTAGTTACTCAAGACTTCCAGTATTTGGAGTGTTTGAAACATTTGCAAGTCCAAAACTATGTTGATATAAGATATCCCATTAACAGGGAGATGGATGAGCTTGTATTAGCAAATGTGCACTGCAAGGTTCTGTTGCGGAACTTAATAAGCTTCACTGTTCACCGATGTGATGGTTCAAGTTTCTTATTGTCACCTTCTATGGCAAGAAGTTTTGTACAACTCAAACATCTTGTAATATCAGAATGTCAAATCATGGAAGAGATAGTATCGACAAAAGAATACAGTGAAGAAAACAAGGATAACATGTTTCCTAAGTTGGAGAAATTGGAGCTAAGTGATCTTCCTCATCTCACTAGATTCTGCTTAGGAGGTTACGTTGAATTTGCATCTCTGGAGAGATTGCAACTAGAGAAGTGCACTAAGTTGGAGACTTTCATCTCTAATCATGAGAGTGCTGCTCCGTATTTTCTTTTTGACGAGAAGGTAGGGTTTCCAAGGTTGGAGATATTGACCATCAATGGCTTACCTAAGCTGACAACAATGTGGCACACCCAACTTGCTCGAAACTCTTTTTGCAAAATCAGGGACGTTACAGTTAAACGATGCAATAGTCTTAAAAGCATTCTTCCAGACTCGATAATAGCTGGAGCTTTTCAGGAGCTACAAAAGTTGACAGTGGAGGACTGTGTAGTGGAGGAAATAGTTGCCAAGGAAGAGGGACAAGAAATACAAAACCACGATAACTTCTTCCCAAAGCTAGAGTGTTTGGAACTTAAAAGTCTATCCCAACTTAAGAGATTCTATCCAAGCCTTACTGAGGAAACACATGACTCGGGCAGTCAGTCTATTCCAGTTAAACAATCTTCTGTTCTGATCAATACGACCTCATTCCCCAACCTAGAAGATTTGACCGTCTGTATGGACAATTGGCACAGCCGACCTGCCCCATCAGTTTTGTGCGCGAAAGCTCTCTTCTCTGTGATCAGTAGTAGACATCCAGATGGGGGATCCCTTCTATATTTAAGAACTTTGAGGCTGCATGGAATGAAGAAGCCTATGCGTGTCTGGGACACCGCCGAACCAGCTGGCCCAGATTTTCCAAAGTTGGAAATTCTAGAGGTGAAGTTTTGTGGATTGAATAATCTAGAGTTCTCTGCAATATCCTTCAAGAATCTAACAATTTTAGAAGTAACCTTTTGCTGGCGATTGCAATATTTGGCAACTTATACGGTTGCTCAAAGTTTAGTGAGACTCAAAAAATTGAAAGTTGATGAGTGTAAAAAAATGAAAGAAGTCTTCACAAGCGAAGGAATGGAAGAAGATACAAGTGAGTGTACGATTGTTTTCAGCCGGTTGCAACATTTGGAACTTACTGATTTAGTAAGTTTGGAACGCTTTTGCCCAAGAAATTGCAGGGTGAAGGTCCCAGAAACCTTGGAAACTTTAGAGGTAAAATGGTGCTCTTTCGAGCTGAAGATTTCCTCCGATGGGGTACTAGAAGAAATTGTTCCCAATATGCATCTAGATGTACAAAAGTCACATCCCAAAGAAGAGGCCTTGATAACAAATCAGAAACAGCCTTCCCCAAACGCCTCTGAAGGAGCTCAACATGTCGGGTTTAATCTACGAGAACTCCATGATGACAGCCTTAAAACTGAGCCGAAAAAAGACGGGCCTCTACGGCCAGGCATTGCTGAAAGTGAACATGGTGGAGTTGAAGCTGTGGTTCAAGAAACTCCTATTAATTCGCACAACATGAATCATGCTGAAGCTATGGACCTAAAGCACAAGCACATTGTCACCAATACTTGGGAGGCTGATTTTGGCAGGGAAGAGAGCCTCACTGAACCTTTGAATGCAGATGTAGGCAACCAGCTTCAATTGAAACAACTTGATGGTGTACAAACGGAATCACGGTTGCAAAGCATAGCTATTAAGCTTGATGAAGACATAGGAGGTTTGCAGAATGAATTAAGGCGTCTGCAGAAAGAATTAAGTGCCAAAGAAGCAGAGAGGAGAGATACAGAGCAAAAGCTTGCTGATCTTGTGAGAGCTAAACGATTATCTGACCCTTCAGGAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006354 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0018130 GO:0019438 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0070449 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med26

Protein Analysis

1499

Amino Acids

171.12

Weight (kDa)

5.88

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	178 - 309	6.1e-20	NB-ARC domain
AAA_22	PF13401	194 - 283	1e-05	AAA domain
LRR_14	PF23598	563 - 717	2.4e-08	Leucine-rich repeat region
LRR_RPS2	PF23247	836 - 951	2.3e-13	Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2	PF23247	977 - 1073	3e-12	Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2	PF23247	1186 - 1292	6.4e-11	Plant disease resistance protein RPS2-like, leucine-rich repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca	FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica	MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica	Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis	pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis	RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata	RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora	Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa	Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha	Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana	Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	536
Acc36I	ACCTGC	1 cut(s)	3364
AccB7I	CCANNNNNTGG	3 cut(s)	129, 2440, 4224
AccBSI	CCGCTC	2 cut(s)	197, 302
AccI	GTMKAC	3 cut(s)	799, 1108, 3406
AccII	CGCG	2 cut(s)	307, 3377
AciI	CCGC	8 cut(s)	197, 302, 307, 580, 946, 2200, 2551, 3489
AclWI	GGATC	4 cut(s)	593, 1232, 3417, 3430
AcoI	YGGCCR	1 cut(s)	4097
AcsI	RAATTY	8 cut(s)	474, 568, 723, 775, 1355, 1905, 2795, 3525
AcyI	GRCGYC	3 cut(s)	139, 533, 4393
AdeI	CACNNNGTG	1 cut(s)	133
AflII	CTTAAG	1 cut(s)	3206
AflIII	ACRYGT	3 cut(s)	2235, 2718, 4024
AhlI	ACTAGT	1 cut(s)	265
AjiI	CACGTC	1 cut(s)	2236
AjnI	CCWGG	4 cut(s)	513, 714, 806, 4099
AleI	CACNNNNGTG	1 cut(s)	2580
Alw21I	GWGCWC	6 cut(s)	960, 996, 2535, 2834, 3878, 4021
Alw26I	GTCTC	8 cut(s)	371, 1227, 1863, 2035, 2139, 2273, 2837, 3658
Alw44I	GTGCAC	2 cut(s)	2531, 2830
AlwI	GGATC	4 cut(s)	593, 1232, 3417, 3430
AlwNI	CAGNNNCTG	1 cut(s)	1825
Ama87I	CYCGRG	2 cut(s)	72, 3247
AoxI	GGCC	8 cut(s)	190, 961, 997, 1372, 3502, 3969, 4088, 4097
ApaLI	GTGCAC	2 cut(s)	2531, 2830
ApeKI	GCWGC	6 cut(s)	82, 212, 314, 1888, 2870, 3451
ApoI	RAATTY	8 cut(s)	474, 568, 723, 775, 1355, 1905, 2795, 3525
AseI	ATTAAT	2 cut(s)	1124, 4158
Asp700I	GAANNNNTTC	2 cut(s)	723, 3921
AspLEI	GCGC	2 cut(s)	307, 3377
AspS9I	GGNCC	8 cut(s)	599, 962, 998, 1372, 3503, 3838, 4088, 4192
AsuC2I	CCSGG	2 cut(s)	452, 505
AvaI	CYCGRG	2 cut(s)	72, 3247
AvaII	GGWCC	3 cut(s)	599, 3838, 4192
BaeGI	GKGCMC	3 cut(s)	580, 2535, 2834
BamHI	GGATCC	1 cut(s)	3422
BanII	GRGCYC	3 cut(s)	960, 996, 4021
BauI	CACGAG	1 cut(s)	1230
BbsI	GAAGAC	6 cut(s)	48, 1961, 2055, 2373, 3703, 4368
Bbv12I	GWGCWC	6 cut(s)	960, 996, 2535, 2834, 3878, 4021
BbvI	GCAGC	6 cut(s)	94, 199, 301, 1900, 2857, 3438
BceAI	ACGGC	1 cut(s)	4112
BcgI	CGANNNNNNTGC	2 cut(s)	1946, 1980
BciT130I	CCWGG	4 cut(s)	515, 716, 808, 4101
BciVI	GTATCC	4 cut(s)	508, 804, 1668, 2326
BclI	TGATCA	2 cut(s)	3288, 3396
BcnI	CCSGG	2 cut(s)	452, 505
BcoDI	GTCTC	8 cut(s)	371, 1227, 1863, 2035, 2139, 2273, 2837, 3658
BcuI	ACTAGT	1 cut(s)	265
BfmI	CTRYAG	3 cut(s)	315, 603, 4397
BfrI	CTTAAG	1 cut(s)	3206
BfuAI	ACCTGC	1 cut(s)	3364
BfuI	GTATCC	4 cut(s)	508, 804, 1668, 2326
BglI	GCCNNNNNGGC	1 cut(s)	4096
BglII	AGATCT	2 cut(s)	355, 1481
BisI	GCNGC	7 cut(s)	83, 213, 303, 315, 1889, 2871, 3452
BlsI	GCNGC	7 cut(s)	84, 214, 304, 316, 1890, 2872, 3453
BmcAI	AGTACT	1 cut(s)	986
Bme1390I	CCNGG	6 cut(s)	452, 505, 515, 716, 808, 4101
Bme18I	GGWCC	3 cut(s)	599, 3838, 4192
BmeT110I	CYCGRG	2 cut(s)	72, 3247
BmgBI	CACGTC	1 cut(s)	2236
BmgT120I	GGNCC	8 cut(s)	599, 962, 998, 1372, 3503, 3838, 4088, 4192
BmiI	GGNNCC	3 cut(s)	1025, 3424, 3840
BmrFI	CCNGG	6 cut(s)	452, 505, 515, 716, 808, 4101
BmrI	ACTGGG	1 cut(s)	139
BmsI	GCATC	8 cut(s)	1181, 1402, 1722, 1801, 2394, 2810, 3008, 3943
BmuI	ACTGGG	1 cut(s)	139
BpiI	GAAGAC	6 cut(s)	48, 1961, 2055, 2373, 3703, 4368
BplI	GAGNNNNNCTC	4 cut(s)	2239, 2271, 2857, 2889
BpmI	CTGGAG	2 cut(s)	2828, 3081
Bpu10I	CCTNAGC	2 cut(s)	2779, 2943
BpuEI	CTTGAG	6 cut(s)	503, 785, 1424, 2074, 2288, 2409
BpuMI	CCSGG	2 cut(s)	452, 505
BsaAI	YACGTR	2 cut(s)	803, 1508
BsaBI	GATNNNNATC	1 cut(s)	1449
BsaHI	GRCGYC	3 cut(s)	139, 533, 4393
BsaI	GGTCTC	1 cut(s)	1227
BsaJI	CCNNGG	8 cut(s)	71, 370, 504, 1863, 2376, 2909, 3123, 3849
BsaXI	ACNNNNNCTCC	6 cut(s)	2180, 2210, 2775, 2805, 4032, 4062
Bse118I	RCCGGY	2 cut(s)	43, 3765
Bse1I	ACTGG	5 cut(s)	134, 1641, 1926, 2434, 3266
Bse3DI	GCAATG	1 cut(s)	4104
Bse8I	GATNNNNATC	1 cut(s)	1449
BseBI	CCWGG	4 cut(s)	515, 716, 808, 4101
BseDI	CCNNGG	8 cut(s)	71, 370, 504, 1863, 2376, 2909, 3123, 3849
BseGI	GGATG	8 cut(s)	775, 847, 1196, 1736, 2386, 2515, 3409, 3955
BseJI	GATNNNNATC	1 cut(s)	1449
BseMI	GCAATG	1 cut(s)	4104
BseMII	CTCAG	7 cut(s)	51, 1924, 1934, 2109, 2150, 3222, 4062
BseNI	ACTGG	5 cut(s)	134, 1641, 1926, 2434, 3266
BseRI	GAGGAG	2 cut(s)	919, 4444
BseSI	GKGCMC	3 cut(s)	580, 2535, 2834
BseXI	GCAGC	6 cut(s)	94, 199, 301, 1900, 2857, 3438
BseYI	CCCAGC	1 cut(s)	406
BsgI	GTGCAG	1 cut(s)	1639
Bsh1236I	CGCG	2 cut(s)	307, 3377
BshFI	GGCC	8 cut(s)	192, 963, 999, 1374, 3504, 3971, 4090, 4099
BsiHKAI	GWGCWC	6 cut(s)	960, 996, 2535, 2834, 3878, 4021
BsiHKCI	CYCGRG	2 cut(s)	72, 3247
BsiSI	CCGG	4 cut(s)	44, 451, 504, 3766
BslFI	GGGAC	8 cut(s)	150, 467, 891, 2246, 3014, 3147, 3497, 3824
BsmAI	GTCTC	8 cut(s)	371, 1227, 1863, 2035, 2139, 2273, 2837, 3658
BsmBI	CGTCTC	1 cut(s)	1863
BsmFI	GGGAC	8 cut(s)	150, 467, 891, 2246, 3014, 3147, 3497, 3824
BsmI	GAATGC	4 cut(s)	1497, 2173, 3036, 4276
BsnI	GGCC	8 cut(s)	192, 963, 999, 1374, 3504, 3971, 4090, 4099
Bso31I	GGTCTC	1 cut(s)	1227
BsoBI	CYCGRG	2 cut(s)	72, 3247
Bsp1286I	GDGCHC	7 cut(s)	580, 960, 996, 2535, 2834, 3878, 4021
Bsp1407I	TGTACA	3 cut(s)	2629, 3943, 4315
Bsp19I	CCATGG	1 cut(s)	370
BspACI	CCGC	8 cut(s)	197, 302, 307, 580, 946, 2200, 2551, 3489
BspANI	GGCC	8 cut(s)	192, 963, 999, 1374, 3504, 3971, 4090, 4099
BspCNI	CTCAG	7 cut(s)	52, 1923, 1933, 2110, 2149, 3223, 4063
BspFNI	CGCG	2 cut(s)	307, 3377
BspHI	TCATGA	1 cut(s)	2860
BspLI	GGNNCC	3 cut(s)	1025, 3424, 3840
BspMAI	CTGCAG	2 cut(s)	319, 4401
BspMI	ACCTGC	1 cut(s)	3364
BspPI	GGATC	4 cut(s)	593, 1232, 3417, 3430
BspQI	GCTCTTC	1 cut(s)	781
BspTI	CTTAAG	1 cut(s)	3206
BspTNI	GGTCTC	1 cut(s)	1227
BsrBI	CCGCTC	2 cut(s)	197, 302
BsrDI	GCAATG	1 cut(s)	4104
BsrFI	RCCGGY	2 cut(s)	43, 3765
BsrGI	TGTACA	3 cut(s)	2629, 3943, 4315
BsrI	ACTGG	5 cut(s)	134, 1641, 1926, 2434, 3266
BssAI	RCCGGY	2 cut(s)	43, 3765
BssECI	CCNNGG	8 cut(s)	71, 370, 504, 1863, 2376, 2909, 3123, 3849
BssNI	GRCGYC	3 cut(s)	139, 533, 4393
BssSI	CACGAG	1 cut(s)	1230
BssT1I	CCWWGG	6 cut(s)	370, 1863, 2376, 2909, 3123, 3849
Bst2BI	CACGAG	1 cut(s)	1230
Bst2UI	CCWGG	4 cut(s)	515, 716, 808, 4101
BstACI	GRCGYC	3 cut(s)	139, 533, 4393
BstAFI	CTTAAG	1 cut(s)	3206
BstAPI	GCANNNNNTGC	1 cut(s)	1412
BstAUI	TGTACA	3 cut(s)	2629, 3943, 4315
BstBAI	YACGTR	2 cut(s)	803, 1508
BstDSI	CCRYGG	1 cut(s)	370
BstENI	CCTNNNNNAGG	1 cut(s)	3230
BstF5I	GGATG	8 cut(s)	775, 847, 1196, 1736, 2386, 2515, 3409, 3955
BstFNI	CGCG	2 cut(s)	307, 3377
BstHHI	GCGC	2 cut(s)	307, 3377
BstMAI	GTCTC	8 cut(s)	371, 1227, 1863, 2035, 2139, 2273, 2837, 3658
BstMWI	GCNNNNNNNGC	7 cut(s)	311, 1412, 1702, 2109, 3497, 4096, 4421
BstNI	CCWGG	4 cut(s)	515, 716, 808, 4101
BstNSI	RCATGY	3 cut(s)	1841, 2722, 4028
BstSCI	CCNGG	6 cut(s)	450, 503, 513, 714, 806, 4099
BstSFI	CTRYAG	3 cut(s)	315, 603, 4397
BstSLI	GKGCMC	3 cut(s)	580, 2535, 2834
BstUI	CGCG	2 cut(s)	307, 3377
BstV1I	GCAGC	6 cut(s)	94, 199, 301, 1900, 2857, 3438
BstV2I	GAAGAC	6 cut(s)	48, 1961, 2055, 2373, 3703, 4368
BstX2I	RGATCY	3 cut(s)	355, 1481, 3422
BstYI	RGATCY	3 cut(s)	355, 1481, 3422
BsuI	GTATCC	4 cut(s)	508, 804, 1668, 2326
BsuRI	GGCC	8 cut(s)	192, 963, 999, 1374, 3504, 3971, 4090, 4099
BtgI	CCRYGG	1 cut(s)	370
BtrI	CACGTC	1 cut(s)	2236
BtsCI	GGATG	8 cut(s)	775, 847, 1196, 1736, 2386, 2515, 3409, 3955
BtsI	GCAGTG	4 cut(s)	160, 182, 324, 2533
BveI	ACCTGC	1 cut(s)	3364
CaiI	CAGNNNCTG	1 cut(s)	1825
CciI	TCATGA	1 cut(s)	2860
CfoI	GCGC	2 cut(s)	307, 3377
Cfr10I	RCCGGY	2 cut(s)	43, 3765
Cfr13I	GGNCC	8 cut(s)	599, 962, 998, 1372, 3503, 3838, 4088, 4192
CseI	GACGC	2 cut(s)	147, 4382
DraI	TTTAAA	2 cut(s)	91, 1851
DraIII	CACNNNGTG	1 cut(s)	133
EaeI	YGGCCR	1 cut(s)	4097
Ecl136II	GAGCTC	3 cut(s)	958, 994, 4019
Eco130I	CCWWGG	6 cut(s)	370, 1863, 2376, 2909, 3123, 3849
Eco147I	AGGCCT	1 cut(s)	3971
Eco24I	GRGCYC	3 cut(s)	960, 996, 4021
Eco31I	GGTCTC	1 cut(s)	1227
Eco32I	GATATC	2 cut(s)	1629, 2489
Eco47I	GGWCC	3 cut(s)	599, 3838, 4192
Eco53kI	GAGCTC	3 cut(s)	958, 994, 4019
Eco88I	CYCGRG	2 cut(s)	72, 3247
EcoICRI	GAGCTC	3 cut(s)	958, 994, 4019
EcoNI	CCTNNNNNAGG	1 cut(s)	3230
EcoO109I	RGGNCCY	1 cut(s)	3838
EcoRI	GAATTC	1 cut(s)	568
EcoRII	CCWGG	4 cut(s)	513, 714, 806, 4099
EcoRV	GATATC	2 cut(s)	1629, 2489
EcoT14I	CCWWGG	6 cut(s)	370, 1863, 2376, 2909, 3123, 3849
EcoT22I	ATGCAT	4 cut(s)	1417, 1497, 1839, 3936
EcoT38I	GRGCYC	3 cut(s)	960, 996, 4021
ErhI	CCWWGG	6 cut(s)	370, 1863, 2376, 2909, 3123, 3849
Esp3I	CGTCTC	1 cut(s)	1863
FalI	AAGNNNNNCTT	2 cut(s)	1592, 1624
FaqI	GGGAC	8 cut(s)	150, 467, 891, 2246, 3014, 3147, 3497, 3824
FauI	CCCGC	3 cut(s)	300, 587, 2207
FbaI	TGATCA	2 cut(s)	3288, 3396
FblI	GTMKAC	3 cut(s)	799, 1108, 3406
Fnu4HI	GCNGC	7 cut(s)	83, 213, 303, 315, 1889, 2871, 3452
FokI	GGATG	8 cut(s)	782, 854, 1203, 1723, 2393, 2522, 3396, 3942
FriOI	GRGCYC	3 cut(s)	960, 996, 4021
Fsp4HI	GCNGC	7 cut(s)	83, 213, 303, 315, 1889, 2871, 3452
GlaI	GCGC	2 cut(s)	306, 3376
GluI	GCNGC	7 cut(s)	83, 213, 303, 315, 1889, 2871, 3452
GsaI	CCCAGC	1 cut(s)	410
GsuI	CTGGAG	2 cut(s)	2828, 3081
HaeIII	GGCC	8 cut(s)	192, 963, 999, 1374, 3504, 3971, 4090, 4099
HapII	CCGG	4 cut(s)	44, 451, 504, 3766
HgaI	GACGC	2 cut(s)	147, 4382
HhaI	GCGC	2 cut(s)	307, 3377
Hin1I	GRCGYC	3 cut(s)	139, 533, 4393
Hin6I	GCGC	2 cut(s)	305, 3375
HinP1I	GCGC	2 cut(s)	305, 3375
HincII	GTYRAC	2 cut(s)	537, 3087
HindII	GTYRAC	2 cut(s)	537, 3087
HindIII	AAGCTT	4 cut(s)	2032, 2563, 4352, 4448
HpaII	CCGG	4 cut(s)	44, 451, 504, 3766
HpyCH4IV	ACGT	8 cut(s)	533, 802, 1111, 1507, 1872, 2235, 2790, 3003
HpyF10VI	GCNNNNNNNGC	7 cut(s)	311, 1412, 1702, 2109, 3497, 4096, 4421
HpySE526I	ACGT	8 cut(s)	533, 802, 1111, 1507, 1872, 2235, 2790, 3003
Hsp92I	GRCGYC	3 cut(s)	139, 533, 4393
HspAI	GCGC	2 cut(s)	305, 3375
KroI	GCCGGC	1 cut(s)	43
KroNI	GCCGGC	1 cut(s)	45
Ksp22I	TGATCA	2 cut(s)	3288, 3396
LguI	GCTCTTC	1 cut(s)	781
LmnI	GCTCC	6 cut(s)	1399, 2743, 2878, 3062, 3073, 4016
Lsp1109I	GCAGC	6 cut(s)	94, 199, 301, 1900, 2857, 3438
LweI	GCATC	8 cut(s)	1181, 1402, 1722, 1801, 2394, 2810, 3008, 3943
MaeII	ACGT	8 cut(s)	533, 802, 1111, 1507, 1872, 2235, 2790, 3003
MbiI	CCGCTC	2 cut(s)	197, 302
MfeI	CAATTG	4 cut(s)	1268, 1937, 3340, 4295
MflI	RGATCY	3 cut(s)	355, 1481, 3422
MhlI	GDGCHC	7 cut(s)	580, 960, 996, 2535, 2834, 3878, 4021
MlyI	GAGTC	6 cut(s)	230, 873, 1957, 3041, 3239, 3660
MmeI	TCCRAC	7 cut(s)	1755, 1764, 1959, 2712, 2820, 2895, 3501
Mph1103I	ATGCAT	4 cut(s)	1417, 1497, 1839, 3936
MroNI	GCCGGC	1 cut(s)	43
MroXI	GAANNNNTTC	2 cut(s)	723, 3921
MslI	CAYNNNNRTG	4 cut(s)	2580, 2865, 3414, 3939
MspA1I	CMGCKG	1 cut(s)	3500
MspCI	CTTAAG	1 cut(s)	3206
MspI	CCGG	4 cut(s)	44, 451, 504, 3766
MspR9I	CCNGG	6 cut(s)	452, 505, 515, 716, 808, 4101
MunI	CAATTG	4 cut(s)	1268, 1937, 3340, 4295
Mva1269I	GAATGC	4 cut(s)	1497, 2173, 3036, 4276
MvaI	CCWGG	4 cut(s)	515, 716, 808, 4101
MvnI	CGCG	2 cut(s)	307, 3377
MwoI	GCNNNNNNNGC	7 cut(s)	311, 1412, 1702, 2109, 3497, 4096, 4421
NaeI	GCCGGC	1 cut(s)	45
NciI	CCSGG	2 cut(s)	452, 505
NcoI	CCATGG	1 cut(s)	370
NgoMIV	GCCGGC	1 cut(s)	43
NlaIV	GGNNCC	3 cut(s)	1025, 3424, 3840
NmeAIII	GCCGAG	3 cut(s)	218, 939, 975
NmuCI	GTSAC	6 cut(s)	319, 1571, 1800, 2604, 3951, 4213
NsiI	ATGCAT	4 cut(s)	1417, 1497, 1839, 3936
NspI	RCATGY	3 cut(s)	1841, 2722, 4028
OliI	CACNNNNGTG	1 cut(s)	2580
PaeI	GCATGC	1 cut(s)	1841
PagI	TCATGA	1 cut(s)	2860
PceI	AGGCCT	1 cut(s)	3971
PciI	ACATGT	2 cut(s)	2718, 4024
PciSI	GCTCTTC	1 cut(s)	781
PctI	GAATGC	4 cut(s)	1497, 2173, 3036, 4276
PdiI	GCCGGC	1 cut(s)	45
PdmI	GAANNNNTTC	2 cut(s)	723, 3921
PflMI	CCANNNNNTGG	3 cut(s)	129, 2440, 4224
PfoI	TCCNGGA	1 cut(s)	450
PkrI	GCNGC	7 cut(s)	84, 214, 304, 316, 1890, 2872, 3453
PleI	GAGTC	6 cut(s)	229, 873, 1957, 3041, 3239, 3660
PpsI	GAGTC	6 cut(s)	229, 873, 1957, 3041, 3239, 3660
Ppu21I	YACGTR	2 cut(s)	803, 1508
PpuMI	RGGWCCY	1 cut(s)	3838
PscI	ACATGT	2 cut(s)	2718, 4024
PshBI	ATTAAT	2 cut(s)	1124, 4158
Psp124BI	GAGCTC	3 cut(s)	960, 996, 4021
Psp5II	RGGWCCY	1 cut(s)	3838
Psp6I	CCWGG	4 cut(s)	513, 714, 806, 4099
PspFI	CCCAGC	1 cut(s)	406
PspGI	CCWGG	4 cut(s)	513, 714, 806, 4099
PspN4I	GGNNCC	3 cut(s)	1025, 3424, 3840
PspPI	GGNCC	8 cut(s)	599, 962, 998, 1372, 3503, 3838, 4088, 4192
PspPPI	RGGWCCY	1 cut(s)	3838
PstI	CTGCAG	2 cut(s)	319, 4401
PstNI	CAGNNNCTG	1 cut(s)	1825
PsuI	RGATCY	3 cut(s)	355, 1481, 3422
PvuII	CAGCTG	1 cut(s)	3500
RseI	CAYNNNNRTG	4 cut(s)	2580, 2865, 3414, 3939
SacI	GAGCTC	3 cut(s)	960, 996, 4021
SapI	GCTCTTC	1 cut(s)	781
SatI	GCNGC	7 cut(s)	83, 213, 303, 315, 1889, 2871, 3452
Sau96I	GGNCC	8 cut(s)	599, 962, 998, 1372, 3503, 3838, 4088, 4192
ScaI	AGTACT	1 cut(s)	986
SchI	GAGTC	6 cut(s)	230, 873, 1957, 3041, 3239, 3660
ScrFI	CCNGG	6 cut(s)	452, 505, 515, 716, 808, 4101
SduI	GDGCHC	7 cut(s)	580, 960, 996, 2535, 2834, 3878, 4021
SfaNI	GCATC	8 cut(s)	1181, 1402, 1722, 1801, 2394, 2810, 3008, 3943
SfcI	CTRYAG	3 cut(s)	315, 603, 4397
SfiI	GGCCNNNNNGGCC	1 cut(s)	4096
SinI	GGWCC	3 cut(s)	599, 3838, 4192
SmiMI	CAYNNNNRTG	4 cut(s)	2580, 2865, 3414, 3939
SmlI	CTYRAG	7 cut(s)	482, 764, 1439, 2053, 2303, 2424, 3206
SmoI	CTYRAG	7 cut(s)	482, 764, 1439, 2053, 2303, 2424, 3206
SpeI	ACTAGT	1 cut(s)	265
SphI	GCATGC	1 cut(s)	1841
SseBI	AGGCCT	1 cut(s)	3971
SsiI	CCGC	8 cut(s)	197, 302, 307, 580, 946, 2200, 2551, 3489
SspI	AATATT	2 cut(s)	1210, 3629
SstI	GAGCTC	3 cut(s)	960, 996, 4021
StuI	AGGCCT	1 cut(s)	3971
StyD4I	CCNGG	6 cut(s)	450, 503, 513, 714, 806, 4099
StyI	CCWWGG	6 cut(s)	370, 1863, 2376, 2909, 3123, 3849
TaiI	ACGT	8 cut(s)	536, 805, 1114, 1510, 1875, 2238, 2793, 3006
TaqI	TCGA	8 cut(s)	954, 990, 2257, 2409, 2684, 2977, 3050, 3882
TatI	WGTACW	6 cut(s)	393, 984, 1643, 2629, 3943, 4315
TauI	GCSGC	1 cut(s)	305
TseFI	GTSAC	6 cut(s)	319, 1571, 1800, 2604, 3951, 4213
TseI	GCWGC	6 cut(s)	82, 212, 314, 1888, 2870, 3451
Tsp45I	GTSAC	6 cut(s)	319, 1571, 1800, 2604, 3951, 4213
TspGWI	ACGGA	4 cut(s)	2134, 2402, 2865, 4337
Van91I	CCANNNNNTGG	3 cut(s)	129, 2440, 4224
Vha464I	CTTAAG	1 cut(s)	3206
VneI	GTGCAC	2 cut(s)	2531, 2830
VpaK11BI	GGWCC	3 cut(s)	599, 3838, 4192
VspI	ATTAAT	2 cut(s)	1124, 4158
XagI	CCTNNNNNAGG	1 cut(s)	3230
XapI	RAATTY	8 cut(s)	474, 568, 723, 775, 1355, 1905, 2795, 3525
XbaI	TCTAGA	3 cut(s)	3529, 3559, 3937
XceI	RCATGY	3 cut(s)	1841, 2722, 4028
XcmI	CCANNNNNNNNNTGG	1 cut(s)	130
XmiI	GTMKAC	3 cut(s)	799, 1108, 3406
XmnI	GAANNNNTTC	2 cut(s)	723, 3921
ZraI	GACGTC	1 cut(s)	534
ZrmI	AGTACT	1 cut(s)	986
Zsp2I	ATGCAT	4 cut(s)	1417, 1497, 1839, 3936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.