Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000218

Physical Location & Seq

Genomic Coordinates Forward (+)

21468816 .. 21470798

Gene Structure 1983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0221900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGATTCATCAAGAAAAGTCAAGTCCCGGTACCCAATTCAAGATCCGCTCTTTCCAAGACAGCATAGTCGAGAAAATTGCAATCTGCAAGAAGGGATGGAGGGATTTCCTTTTGCTAAAACCATGAAGAATGTTTCAAGAGGCATGGCTGTTCTTACAGTTCCGTTTACCATGGGCTTTCCAAAGATTCCCAAAGTTGTTGAGAATTCTGAGAGTGCTTGGACCACACCATCAGTAGTTGCCTTCAATCAGAAAGGAGAGCTACTAGTTGGTACTCCAGCAAAACGTCAAGCAGTTACCAACCCATCGAAGAGTCAGTCTCTATTTGCTTATTTAGCTACTTACCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00905 ko00943 ko00980 ko01100 ko01110 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00905 map00943 map00980 map01100 map01110 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

116

Amino Acids

12.92

Weight (kDa)

9.87

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	64 - 104	1.1e-10	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca	FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica	MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica	Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis	pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis	RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata	RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora	Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa	Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha	Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana	Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	66
Acc65I	GGTACC	1 cut(s)	30
AccB1I	GGYRCC	1 cut(s)	30
AccBSI	CCGCTC	1 cut(s)	49
AciI	CCGC	1 cut(s)	47
AclWI	GGATC	1 cut(s)	38
AcsI	RAATTY	1 cut(s)	205
AfaI	GTAC	2 cut(s)	32, 274
AgsI	TTSAA	3 cut(s)	41, 138, 247
AhlI	ACTAGT	1 cut(s)	265
AluBI	AGCT	2 cut(s)	262, 338
AluI	AGCT	2 cut(s)	262, 338
Alw26I	GTCTC	1 cut(s)	324
AlwI	GGATC	1 cut(s)	38
ApoI	RAATTY	1 cut(s)	205
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
Asp718I	GGTACC	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	222
AsuC2I	CCSGG	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	222
BanI	GGYRCC	1 cut(s)	30
BccI	CCATC	3 cut(s)	91, 238, 313
BcgI	CGANNNNNNTGC	2 cut(s)	60, 94
BcnI	CCSGG	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	324
BcuI	ACTAGT	1 cut(s)	265
BfaI	CTAG	1 cut(s)	266
Bme1390I	CCNGG	1 cut(s)	28
Bme18I	GGWCC	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	222
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	28
BplI	GAGNNNNNCTC	2 cut(s)	304, 336
BpmI	CTGGAG	1 cut(s)	261
BpuMI	CCSGG	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	201
BshNI	GGYRCC	1 cut(s)	30
BsiSI	CCGG	1 cut(s)	28
BslFI	GGGAC	1 cut(s)	10
BsmAI	GTCTC	1 cut(s)	324
BsmFI	GGGAC	1 cut(s)	10
Bsp143I	GATC	1 cut(s)	43
Bsp19I	CCATGG	1 cut(s)	171
BspACI	CCGC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	32
BspPI	GGATC	1 cut(s)	38
BspT107I	GGYRCC	1 cut(s)	30
BsrBI	CCGCTC	1 cut(s)	49
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	1 cut(s)	43
BssT1I	CCWWGG	1 cut(s)	171
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	1 cut(s)	305
BstDEI	CTNAG	1 cut(s)	210
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	102
BstKTI	GATC	1 cut(s)	46
BstMAI	GTCTC	1 cut(s)	324
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	26
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BtgI	CCRYGG	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	102
Cfr13I	GGNCC	1 cut(s)	222
Csp6I	GTAC	2 cut(s)	31, 273
CviAII	CATG	3 cut(s)	124, 145, 172
CviJI	RGCY	4 cut(s)	149, 177, 262, 338
CviKI_1	RGCY	4 cut(s)	149, 177, 262, 338
CviQI	GTAC	2 cut(s)	31, 273
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
DrdI	GACNNNNNNGTC	1 cut(s)	66
DseDI	GACNNNNNNGTC	1 cut(s)	66
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
Eco130I	CCWWGG	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	222
EcoRI	GAATTC	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	3 cut(s)	127, 148, 175
FaiI	YATR	4 cut(s)	66, 125, 146, 173
FaqI	GGGAC	1 cut(s)	10
FatI	CATG	3 cut(s)	123, 144, 171
FokI	GGATG	1 cut(s)	109
FspBI	CTAG	1 cut(s)	266
GsuI	CTGGAG	1 cut(s)	261
HapII	CCGG	1 cut(s)	28
Hin1II	CATG	3 cut(s)	127, 148, 175
HinfI	GANTC	3 cut(s)	5, 187, 313
HpaII	CCGG	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188I	TCNGA	2 cut(s)	211, 252
Hpy188III	TCNNGA	4 cut(s)	12, 41, 71, 138
Hpy8I	GTNNAC	1 cut(s)	168
HpyAV	CCTTC	2 cut(s)	86, 253
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	2 cut(s)	81, 88
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	286
Hsp92II	CATG	3 cut(s)	127, 148, 175
KpnI	GGTACC	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	43
LpnPI	CCDG	2 cut(s)	41, 291
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	1 cut(s)	286
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	1 cut(s)	45
MbiI	CCGCTC	1 cut(s)	49
MboI	GATC	1 cut(s)	43
MboII	GAAGA	2 cut(s)	139, 322
MflI	RGATCY	1 cut(s)	43
MluCI	AATT	3 cut(s)	36, 76, 205
MlyI	GAGTC	1 cut(s)	322
MnlI	CCTC	2 cut(s)	94, 134
MspI	CCGG	1 cut(s)	28
MspR9I	CCNGG	1 cut(s)	28
MwoI	GCNNNNNNNGC	1 cut(s)	335
NciI	CCSGG	1 cut(s)	28
NcoI	CCATGG	1 cut(s)	171
NdeII	GATC	1 cut(s)	43
NlaIII	CATG	3 cut(s)	127, 148, 175
NlaIV	GGNNCC	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	5, 187
PleI	GAGTC	1 cut(s)	321
PpsI	GAGTC	1 cut(s)	321
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	43
RsaI	GTAC	2 cut(s)	32, 274
RsaNI	GTAC	2 cut(s)	31, 273
Sau3AI	GATC	1 cut(s)	43
Sau96I	GGNCC	1 cut(s)	222
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	1 cut(s)	28
SetI	ASST	3 cut(s)	264, 289, 340
SinI	GGWCC	1 cut(s)	222
SpeI	ACTAGT	1 cut(s)	265
Sse9I	AATT	3 cut(s)	36, 76, 205
SsiI	CCGC	1 cut(s)	47
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	1 cut(s)	26
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	2 cut(s)	70, 308
TasI	AATT	3 cut(s)	36, 76, 205
TfiI	GAWTC	2 cut(s)	5, 187
TspDTI	ATGAA	1 cut(s)	140
TspGWI	ACGGA	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	222
XapI	RAATTY	1 cut(s)	205
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.