Rh5DG500100

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
78415393 .. 78415834
442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG500100.1

Sequence Viewer

Length: 414 bp
ATGCTAGTACCACATTTTGCATCTGATGATTGCGTTGTTGGCGGATTCGATATACCACGTAACACAAAGGTATTGGTCAATGCTTGGGCCATACATAGAGACTCGAAGTTATGGGATGATCCTGAAAGCTTCAAACCTGAGAGGTTTGAAACTGGTAACAAGGATGAGGCACACAAACTTATACCGTTTGGAATGGGAAGAAGGGCTTGTCCTGGAGTAGGCTTGGCCCAACGTGAGGTGGGATTGACTTTGGCTTCATTGATTCAATGTATTGACTGGGAGAGGGTTAGTGAGGAGAAGGTTGATATGACTGAATTAGGAAAAGGAGTCACCATGCATAAACTTCTACCATTAGAGGTCATGTGCAAACCACGCTCATTTTTGAACAATGTGGTTCATTTATTCAACGAATAA

Protein Analysis

137

Amino Acids

15.47

Weight (kDa)

5.95

Isoelectric Point (pI)

34.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 114 2.1e-33 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 42
AclWI GGATC 1 cut(s) 113
AfaI GTAC 1 cut(s) 9
AfiI CCNNNNNNNGG 2 cut(s) 218, 235
AgsI TTSAA 5 cut(s) 133, 149, 266, 385, 406
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 1 cut(s) 129
AluI AGCT 1 cut(s) 129
Alw26I GTCTC 1 cut(s) 93
AlwI GGATC 1 cut(s) 113
AoxI GGCC 2 cut(s) 87, 225
AspS9I GGNCC 2 cut(s) 87, 226
AsuHPI GGTGA 1 cut(s) 322
BciT130I CCWGG 1 cut(s) 213
BcoDI GTCTC 1 cut(s) 93
BfaI CTAG 1 cut(s) 5
Bme1390I CCNGG 1 cut(s) 213
BmgT120I GGNCC 2 cut(s) 87, 226
BmrFI CCNGG 1 cut(s) 213
BmrI ACTGGG 1 cut(s) 286
BmsI GCATC 1 cut(s) 29
BmuI ACTGGG 1 cut(s) 286
BpmI CTGGAG 1 cut(s) 234
BsaAI YACGTR 1 cut(s) 59
Bsc4I CCNNNNNNNGG 2 cut(s) 218, 235
Bse1I ACTGG 2 cut(s) 157, 281
BseBI CCWGG 1 cut(s) 213
BseGI GGATG 2 cut(s) 121, 169
BseLI CCNNNNNNNGG 2 cut(s) 218, 235
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 2 cut(s) 157, 281
BseRI GAGGAG 1 cut(s) 308
BshFI GGCC 2 cut(s) 89, 227
BslI CCNNNNNNNGG 2 cut(s) 218, 235
BsmAI GTCTC 1 cut(s) 93
BsnI GGCC 2 cut(s) 89, 227
Bsp143I GATC 1 cut(s) 118
BspACI CCGC 1 cut(s) 42
BspANI GGCC 2 cut(s) 89, 227
BspCNI CTCAG 1 cut(s) 130
BspPI GGATC 1 cut(s) 113
BsrI ACTGG 2 cut(s) 157, 281
BssMI GATC 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 186
BstBAI YACGTR 1 cut(s) 59
BstDEI CTNAG 1 cut(s) 138
BstENI CCTNNNNNAGG 1 cut(s) 216
BstF5I GGATG 2 cut(s) 121, 169
BstKTI GATC 1 cut(s) 121
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 1 cut(s) 118
BstMWI GCNNNNNNNGC 2 cut(s) 39, 372
BstNI CCWGG 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 211
BsuRI GGCC 2 cut(s) 89, 227
BtsCI GGATG 2 cut(s) 121, 169
Cfr13I GGNCC 2 cut(s) 87, 226
Csp6I GTAC 1 cut(s) 8
CviAII CATG 2 cut(s) 334, 361
CviJI RGCY 6 cut(s) 89, 129, 206, 222, 227, 254
CviKI_1 RGCY 6 cut(s) 89, 129, 206, 222, 227, 254
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 1 cut(s) 138
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
EciI GGCGGA 1 cut(s) 57
EcoNI CCTNNNNNAGG 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 211
EcoT22I ATGCAT 1 cut(s) 339
FaeI CATG 2 cut(s) 337, 364
FaiI YATR 9 cut(s) 53, 92, 96, 112, 182, 308, 335, 339, 362
FalI AAGNNNNNCTT 2 cut(s) 190, 222
FatI CATG 2 cut(s) 333, 360
FokI GGATG 2 cut(s) 128, 176
FspBI CTAG 1 cut(s) 5
GsuI CTGGAG 1 cut(s) 234
HaeIII GGCC 2 cut(s) 89, 227
Hin1II CATG 2 cut(s) 337, 364
HindIII AAGCTT 1 cut(s) 127
HinfI GANTC 4 cut(s) 45, 101, 262, 327
HphI GGTGA 1 cut(s) 322
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 1 cut(s) 122
HpyAV CCTTC 2 cut(s) 195, 292
HpyCH4III ACNGT 1 cut(s) 186
HpyCH4IV ACGT 2 cut(s) 58, 232
HpyCH4V TGCA 3 cut(s) 20, 337, 366
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 372
HpyF3I CTNAG 1 cut(s) 138
HpySE526I ACGT 2 cut(s) 58, 232
Hsp92II CATG 2 cut(s) 337, 364
Kzo9I GATC 1 cut(s) 118
LpnPI CCDG 6 cut(s) 135, 138, 150, 198, 225, 262
LweI GCATC 1 cut(s) 29
MaeI CTAG 1 cut(s) 5
MaeII ACGT 2 cut(s) 58, 232
MaeIII GTNAC 3 cut(s) 59, 155, 328
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 1 cut(s) 210
MluCI AATT 1 cut(s) 314
MlyI GAGTC 2 cut(s) 95, 336
MnlI CCTC 6 cut(s) 135, 160, 229, 276, 286, 349
Mph1103I ATGCAT 1 cut(s) 339
MspR9I CCNGG 1 cut(s) 213
MvaI CCWGG 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 39, 372
NdeII GATC 1 cut(s) 118
NlaIII CATG 2 cut(s) 337, 364
NmuCI GTSAC 1 cut(s) 328
NsiI ATGCAT 1 cut(s) 339
PfeI GAWTC 2 cut(s) 45, 262
PfoI TCCNGGA 1 cut(s) 211
PleI GAGTC 2 cut(s) 95, 335
PpsI GAGTC 2 cut(s) 95, 335
Ppu21I YACGTR 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
PspPI GGNCC 2 cut(s) 87, 226
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
Sau3AI GATC 1 cut(s) 118
Sau96I GGNCC 2 cut(s) 87, 226
SchI GAGTC 2 cut(s) 95, 336
ScrFI CCNGG 1 cut(s) 213
SetI ASST 9 cut(s) 61, 72, 131, 139, 146, 235, 240, 303, 360
SfaNI GCATC 1 cut(s) 29
Sse9I AATT 1 cut(s) 314
SsiI CCGC 1 cut(s) 42
SspMI CTAG 1 cut(s) 5
StyD4I CCNGG 1 cut(s) 211
TaaI ACNGT 1 cut(s) 186
TaiI ACGT 2 cut(s) 61, 235
TaqI TCGA 2 cut(s) 48, 104
TasI AATT 1 cut(s) 314
TfiI GAWTC 2 cut(s) 45, 262
TseFI GTSAC 1 cut(s) 328
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 2 cut(s) 246, 386
XagI CCTNNNNNAGG 1 cut(s) 216
XspI CTAG 1 cut(s) 5
Zsp2I ATGCAT 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.