Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004656.1

Orthogroup ID

OG0000218

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1192

Gene Structure 1192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004656.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

tcctcctcggccgtgcaagaatgcttcactaaaaacgacatcgtgttggcaaaccgtccccccacgctcttaagcaagcactttgggtacaaccaaaccgccatagggagcgccccctacggcgatcactggcgcaacgttcgtcgtatcggcactgtcgaggtcttgtccgccggccggctcaactcgttctccgacatcagaaaagtcgaagtcaagcatttgctgcgcaagctttcccgacatgcagaagaagaagaagaaggtcgttttgtgaaagtggagctgaggtctatgttgtttgagctgactttcaacaacataatgaccatggtggcggggaagaggtatgtcggggaccatgttgcgaacaaggaagaggggaaggagttcattgagatcatggatgaggctttttcgtacaatgggggaaccaaccccggagaattcatgcccttcttgagatggtttggcggtaatggttatgagaggaagttgaagaagttgggcaagagagcagatttgttcttgcaacgtctaattgatgagcaccggaagaagagtgcttccgagagtaaaaataccatgatcgaccatttgctttctcagcaggagtcacaacctgagtattatactgatgagattatcaagggacttgcactg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00905 ko00943 ko00980 ko01100 ko01110 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00905 map00943 map00980 map01100 map01110 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

221

Amino Acids

25.36

Weight (kDa)

8.53

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca	FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica	MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica	Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis	pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis	RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata	RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora	Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa	Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha	Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana	Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	230
AciI	CCGC	4 cut(s)	99, 171, 338, 474
AclI	AACGTT	1 cut(s)	138
AcoI	YGGCCR	2 cut(s)	9, 175
AcsI	RAATTY	1 cut(s)	446
AfaI	GTAC	2 cut(s)	89, 422
AfiI	CCNNNNNNNGG	2 cut(s)	105, 177
AflII	CTTAAG	1 cut(s)	70
AgsI	TTSAA	2 cut(s)	316, 499
AluBI	AGCT	3 cut(s)	235, 286, 307
AluI	AGCT	3 cut(s)	235, 286, 307
Alw21I	GWGCWC	1 cut(s)	552
AoxI	GGCC	2 cut(s)	9, 175
ApeKI	GCWGC	1 cut(s)	226
ApoI	RAATTY	1 cut(s)	446
Asp700I	GAANNNNTTC	1 cut(s)	389
AspLEI	GCGC	3 cut(s)	113, 135, 231
AspS9I	GGNCC	1 cut(s)	358
AsuC2I	CCSGG	1 cut(s)	441
AvaII	GGWCC	1 cut(s)	358
Bbv12I	GWGCWC	1 cut(s)	552
BbvCI	CCTCAGC	1 cut(s)	287
BbvI	GCAGC	1 cut(s)	213
BccI	CCATC	1 cut(s)	459
BceAI	ACGGC	1 cut(s)	136
BcnI	CCSGG	1 cut(s)	441
BfoI	RGCGCY	1 cut(s)	114
BfrI	CTTAAG	1 cut(s)	70
BisI	GCNGC	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	228
Bme1390I	CCNGG	1 cut(s)	441
Bme18I	GGWCC	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	2 cut(s)	359, 433
BmrFI	CCNGG	1 cut(s)	441
Bpu10I	CCTNAGC	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	481
BpuMI	CCSGG	1 cut(s)	441
BsaJI	CCNNGG	3 cut(s)	6, 330, 439
BsaWI	WCCGGW	1 cut(s)	552
BsaXI	ACNNNNNCTCC	4 cut(s)	176, 206, 275, 305
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 177
Bse118I	RCCGGY	2 cut(s)	173, 177
Bse1I	ACTGG	1 cut(s)	134
BseDI	CCNNGG	3 cut(s)	6, 330, 439
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	2 cut(s)	105, 177
BseMII	CTCAG	3 cut(s)	278, 615, 620
BseNI	ACTGG	1 cut(s)	134
BseX3I	CGGCCG	2 cut(s)	9, 175
BseXI	GCAGC	1 cut(s)	213
Bsh1285I	CGRYCG	2 cut(s)	12, 178
BshFI	GGCC	2 cut(s)	11, 177
BsiEI	CGRYCG	2 cut(s)	12, 178
BsiHKAI	GWGCWC	1 cut(s)	552
BsiSI	CCGG	4 cut(s)	174, 178, 441, 553
BslFI	GGGAC	2 cut(s)	42, 371
BslI	CCNNNNNNNGG	2 cut(s)	105, 177
BsmFI	GGGAC	2 cut(s)	42, 371
BsmI	GAATGC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	11, 177
Bsp1286I	GDGCHC	1 cut(s)	552
Bsp143I	GATC	3 cut(s)	124, 399, 588
Bsp19I	CCATGG	1 cut(s)	330
BspACI	CCGC	4 cut(s)	99, 171, 338, 474
BspANI	GGCC	2 cut(s)	11, 177
BspCNI	CTCAG	3 cut(s)	279, 616, 619
BspLI	GGNNCC	2 cut(s)	359, 433
BspTI	CTTAAG	1 cut(s)	70
BsrFI	RCCGGY	2 cut(s)	173, 177
BsrI	ACTGG	1 cut(s)	134
BssAI	RCCGGY	2 cut(s)	173, 177
BssECI	CCNNGG	3 cut(s)	6, 330, 439
BssMI	GATC	3 cut(s)	124, 399, 588
BssT1I	CCWWGG	1 cut(s)	330
Bst4CI	ACNGT	2 cut(s)	56, 157
Bst6I	CTCTTC	3 cut(s)	338, 372, 554
BstAFI	CTTAAG	1 cut(s)	70
BstAPI	GCANNNNNTGC	1 cut(s)	226
BstC8I	GCNNGC	4 cut(s)	77, 175, 179, 233
BstDEI	CTNAG	3 cut(s)	287, 606, 624
BstDSI	CCRYGG	1 cut(s)	330
BstF5I	GGATG	1 cut(s)	412
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	3 cut(s)	113, 135, 231
BstKTI	GATC	3 cut(s)	127, 402, 591
BstMBI	GATC	3 cut(s)	124, 399, 588
BstMCI	CGRYCG	2 cut(s)	12, 178
BstMWI	GCNNNNNNNGC	3 cut(s)	226, 232, 607
BstNSI	RCATGY	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	439
BstV1I	GCAGC	1 cut(s)	213
BstZI	CGGCCG	2 cut(s)	9, 175
BsuRI	GGCC	2 cut(s)	11, 177
BtgI	CCRYGG	1 cut(s)	330
BtsCI	GGATG	1 cut(s)	412
BtsIMutI	CAGTG	3 cut(s)	127, 153, 659
Cac8I	GCNNGC	4 cut(s)	77, 175, 179, 233
CfoI	GCGC	3 cut(s)	113, 135, 231
Cfr10I	RCCGGY	2 cut(s)	173, 177
Cfr13I	GGNCC	1 cut(s)	358
Csp6I	GTAC	2 cut(s)	88, 421
CviAII	CATG	6 cut(s)	245, 331, 362, 403, 451, 586
CviJI	RGCY	7 cut(s)	11, 177, 181, 235, 286, 307, 413
CviKI_1	RGCY	7 cut(s)	11, 177, 181, 235, 286, 307, 413
CviQI	GTAC	2 cut(s)	88, 421
DdeI	CTNAG	3 cut(s)	287, 606, 624
DpnI	GATC	3 cut(s)	126, 401, 590
DpnII	GATC	3 cut(s)	124, 399, 588
EaeI	YGGCCR	2 cut(s)	9, 175
EagI	CGGCCG	2 cut(s)	9, 175
Eam1104I	CTCTTC	3 cut(s)	338, 372, 554
EarI	CTCTTC	3 cut(s)	338, 372, 554
EciI	GGCGGA	1 cut(s)	160
EclXI	CGGCCG	2 cut(s)	9, 175
Eco130I	CCWWGG	1 cut(s)	330
Eco47I	GGWCC	1 cut(s)	358
Eco52I	CGGCCG	2 cut(s)	9, 175
EcoRI	GAATTC	1 cut(s)	446
EcoT14I	CCWWGG	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	6 cut(s)	248, 334, 365, 406, 454, 589
FaqI	GGGAC	2 cut(s)	42, 371
FatI	CATG	6 cut(s)	244, 330, 361, 402, 450, 585
FauI	CCCGC	1 cut(s)	331
Fnu4HI	GCNGC	1 cut(s)	227
FokI	GGATG	1 cut(s)	419
Fsp4HI	GCNGC	1 cut(s)	227
FspI	TGCGCA	1 cut(s)	230
GlaI	GCGC	3 cut(s)	112, 134, 230
GluI	GCNGC	1 cut(s)	227
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	2 cut(s)	11, 177
HapII	CCGG	4 cut(s)	174, 178, 441, 553
HhaI	GCGC	3 cut(s)	113, 135, 231
Hin1II	CATG	6 cut(s)	248, 334, 365, 406, 454, 589
Hin6I	GCGC	3 cut(s)	111, 133, 229
HinP1I	GCGC	3 cut(s)	111, 133, 229
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	1 cut(s)	614
HpaII	CCGG	4 cut(s)	174, 178, 441, 553
Hpy188I	TCNGA	3 cut(s)	196, 203, 571
Hpy188III	TCNNGA	2 cut(s)	240, 460
Hpy99I	CGWCG	1 cut(s)	147
HpyAV	CCTTC	3 cut(s)	257, 379, 466
HpyCH4III	ACNGT	2 cut(s)	56, 157
HpyCH4IV	ACGT	2 cut(s)	138, 535
HpyCH4V	TGCA	4 cut(s)	16, 248, 532, 659
HpyF10VI	GCNNNNNNNGC	3 cut(s)	226, 232, 607
HpyF3I	CTNAG	3 cut(s)	287, 606, 624
HpySE526I	ACGT	2 cut(s)	138, 535
Hsp92II	CATG	6 cut(s)	248, 334, 365, 406, 454, 589
HspAI	GCGC	3 cut(s)	111, 133, 229
KroI	GCCGGC	2 cut(s)	173, 177
KroNI	GCCGGC	2 cut(s)	175, 179
Kzo9I	GATC	3 cut(s)	124, 399, 588
LmnI	GCTCC	2 cut(s)	108, 283
LpnPI	CCDG	7 cut(s)	115, 187, 191, 454, 566, 596, 636
Lsp1109I	GCAGC	1 cut(s)	213
MaeII	ACGT	2 cut(s)	138, 535
MaeIII	GTNAC	1 cut(s)	615
MalI	GATC	3 cut(s)	126, 401, 590
MboI	GATC	3 cut(s)	124, 399, 588
MboII	GAAGA	9 cut(s)	263, 266, 269, 272, 355, 389, 511, 568, 571
MhlI	GDGCHC	1 cut(s)	552
MluCI	AATT	2 cut(s)	446, 540
MlyI	GAGTC	1 cut(s)	623
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	8 cut(s)	13, 16, 154, 282, 339, 373, 403, 483
MroNI	GCCGGC	2 cut(s)	173, 177
MroXI	GAANNNNTTC	1 cut(s)	389
MseI	TTAA	1 cut(s)	71
MspCI	CTTAAG	1 cut(s)	70
MspI	CCGG	4 cut(s)	174, 178, 441, 553
MspR9I	CCNGG	1 cut(s)	441
Mva1269I	GAATGC	1 cut(s)	26
MwoI	GCNNNNNNNGC	3 cut(s)	226, 232, 607
NaeI	GCCGGC	2 cut(s)	175, 179
NciI	CCSGG	1 cut(s)	441
NcoI	CCATGG	1 cut(s)	330
NdeII	GATC	3 cut(s)	124, 399, 588
NgoMIV	GCCGGC	2 cut(s)	173, 177
NlaIII	CATG	6 cut(s)	248, 334, 365, 406, 454, 589
NlaIV	GGNNCC	2 cut(s)	359, 433
NmuCI	GTSAC	1 cut(s)	615
NsbI	TGCGCA	1 cut(s)	230
NspI	RCATGY	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PctI	GAATGC	1 cut(s)	26
PdiI	GCCGGC	2 cut(s)	175, 179
PdmI	GAANNNNTTC	1 cut(s)	389
PkrI	GCNGC	1 cut(s)	228
PleI	GAGTC	1 cut(s)	622
PpsI	GAGTC	1 cut(s)	622
Psp1406I	AACGTT	1 cut(s)	138
PspN4I	GGNNCC	2 cut(s)	359, 433
PspPI	GGNCC	1 cut(s)	358
RsaI	GTAC	2 cut(s)	89, 422
RsaNI	GTAC	2 cut(s)	88, 421
SaqAI	TTAA	1 cut(s)	71
SatI	GCNGC	1 cut(s)	227
Sau3AI	GATC	3 cut(s)	124, 399, 588
Sau96I	GGNCC	1 cut(s)	358
SchI	GAGTC	1 cut(s)	623
ScrFI	CCNGG	1 cut(s)	441
SduI	GDGCHC	1 cut(s)	552
SinI	GGWCC	1 cut(s)	358
SmlI	CTYRAG	2 cut(s)	70, 460
SmoI	CTYRAG	2 cut(s)	70, 460
Sse9I	AATT	2 cut(s)	446, 540
SsiI	CCGC	4 cut(s)	99, 171, 338, 474
StyD4I	CCNGG	1 cut(s)	439
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	2 cut(s)	56, 157
TaiI	ACGT	2 cut(s)	141, 538
TaqI	TCGA	3 cut(s)	159, 210, 591
TasI	AATT	2 cut(s)	446, 540
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TscAI	CASTG	2 cut(s)	134, 160
TseFI	GTSAC	1 cut(s)	615
TseI	GCWGC	1 cut(s)	226
Tsp45I	GTSAC	1 cut(s)	615
TspDTI	ATGAA	2 cut(s)	382, 439
TspRI	CASTG	2 cut(s)	134, 160
Vha464I	CTTAAG	1 cut(s)	70
VpaK11BI	GGWCC	1 cut(s)	358
XapI	RAATTY	1 cut(s)	446
XceI	RCATGY	1 cut(s)	248
XmnI	GAANNNNTTC	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.