Rorug06G0369500

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
51634613 .. 51638699
4087 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0369500.1

Sequence Viewer

Length: 984 bp
ATGGCTTCAGATTTTGCTTTCAAAGTTCCGGCTGAACTTGAAGCGGCTTTGCGGTTGAACTCAGTTCATCACTATGTGACAAAAAGGCCGTGGCTTGACCTTTATGGAGTCAATGTTAGACCTGTTGCACCATTTGGAAGTATGAGTAGAAAAGCAAATGTTGATCCAGCACTGTTACACCAGTACTTGCCGGATGAGTTGCTCTTTGAGTTGTTTGCACGAATGACTCCATATGACATGGGAAGGGCATCTTGTGTTTGTCGAAAATGGAGATACACTATCCGTAATCCTGTGTTTTGGCGCATTTCATGCTTAAAAGCTTGGCAGCTTTCTGGAGTTGTTGAAAACTATAAGATTTTACAAGCAAAATATGAGAGTTCATGGAGAAAAATGTGGCTTCTAAGACCAAGGGTCCGCACTGATGGTCTGTATGTGAGTAGGAATACTTATATTCGCACGGGAGTTGCAGAATGGAAGGTCTCTAACCCAGTTCACTTGGTCTGCTACTATCGCTACATCAGATTCTATCCTTCTGGCCGATTTCTTTATAAGAATTCATCTCTAAAAGTCAAGGATGTGGCAAAAATCATGAACATCCGTGCAGCCAAGGCAGACTCGGTTTTCAGTGGCCATTACTCATTGTCAGATGATAAGGTTGAAGCAGCAGTTTTGTATCCAGGCAGGCGTCCGACTGTGTTGAGAATCCGCCTAAGGTTAAGAGGAACAGTAACAGGGGCAAACAATCGTATGGATTTACTGTCACTTGTTACAAGTGGTGTGAACGATGATGAGGTCTGTGGCCCTGATGAGGATATCCTTGGGGTGGTTGAAGGATGGCAGGATGATGAGACTCACAACCCAGATGTGCCAGCTGTCTCACACACGAGGGGTCTAACACCTTTTGTCTTCATTCCGTTTGAAGAGGTGGATACATCATTTCTGAATCTACCTGTGGAAAAGATGGATTATTTTGTGCCTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

327

Amino Acids

37.6

Weight (kDa)

9.23

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 62 - 105 2e-10 F-box-like
F-box PF00646 63 - 101 7.6e-11 F-box domain
FBO_C PF19270 117 - 327 1.1e-104 F-box only protein C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 549
AciI CCGC 4 cut(s) 44, 52, 415, 706
AclWI GGATC 1 cut(s) 158
AcoI YGGCCR 2 cut(s) 535, 628
AcsI RAATTY 1 cut(s) 553
AcyI GRCGYC 1 cut(s) 685
AdeI CACNNNGTG 1 cut(s) 76
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 2 cut(s) 808, 823
AgsI TTSAA 7 cut(s) 22, 41, 58, 344, 659, 830, 920
AhdI GACNNNNNGTC 1 cut(s) 410
AjnI CCWGG 2 cut(s) 676, 976
AluBI AGCT 3 cut(s) 320, 328, 872
AluI AGCT 3 cut(s) 320, 328, 872
Alw26I GTCTC 3 cut(s) 484, 842, 880
AlwI GGATC 1 cut(s) 158
AoxI GGCC 4 cut(s) 86, 535, 628, 799
ApeKI GCWGC 3 cut(s) 325, 602, 662
ApoI RAATTY 1 cut(s) 553
AspLEI GCGC 1 cut(s) 303
AspS9I GGNCC 2 cut(s) 412, 800
AvaII GGWCC 1 cut(s) 412
AxyI CCTNAGG 1 cut(s) 710
BalI TGGCCA 1 cut(s) 630
BauI CACGAG 1 cut(s) 883
BbsI GAAGAC 1 cut(s) 898
BbvI GCAGC 3 cut(s) 337, 614, 674
BccI CCATC 3 cut(s) 416, 828, 955
BceAI ACGGC 1 cut(s) 73
BciT130I CCWGG 2 cut(s) 678, 978
BciVI GTATCC 2 cut(s) 684, 922
BcoDI GTCTC 3 cut(s) 484, 842, 880
BfuI GTATCC 2 cut(s) 684, 922
BisI GCNGC 4 cut(s) 45, 326, 603, 663
BlsI GCNGC 4 cut(s) 46, 327, 604, 664
BmcAI AGTACT 1 cut(s) 185
Bme1390I CCNGG 2 cut(s) 678, 978
Bme18I GGWCC 1 cut(s) 412
BmeRI GACNNNNNGTC 1 cut(s) 410
BmgT120I GGNCC 2 cut(s) 412, 800
BmiI GGNNCC 1 cut(s) 413
BmrFI CCNGG 2 cut(s) 678, 978
BmrI ACTGGG 1 cut(s) 482
BmsI GCATC 1 cut(s) 257
BmuI ACTGGG 1 cut(s) 482
BpiI GAAGAC 1 cut(s) 898
BpmI CTGGAG 1 cut(s) 354
BsaHI GRCGYC 1 cut(s) 685
BsaI GGTCTC 1 cut(s) 484
BsaJI CCNNGG 4 cut(s) 89, 407, 606, 817
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bsc4I CCNNNNNNNGG 2 cut(s) 808, 823
Bse1I ACTGG 2 cut(s) 181, 488
Bse21I CCTNAGG 1 cut(s) 710
BseBI CCWGG 2 cut(s) 678, 978
BseDI CCNNGG 4 cut(s) 89, 407, 606, 817
BseGI GGATG 5 cut(s) 199, 580, 594, 839, 847
BseLI CCNNNNNNNGG 2 cut(s) 808, 823
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 2 cut(s) 181, 488
BseXI GCAGC 3 cut(s) 337, 614, 674
BsgI GTGCAG 1 cut(s) 621
BshFI GGCC 4 cut(s) 88, 537, 630, 801
BsiSI CCGG 2 cut(s) 29, 191
BslI CCNNNNNNNGG 2 cut(s) 808, 823
BsmAI GTCTC 3 cut(s) 484, 842, 880
BsnI GGCC 4 cut(s) 88, 537, 630, 801
Bso31I GGTCTC 1 cut(s) 484
Bsp143I GATC 1 cut(s) 163
BspACI CCGC 4 cut(s) 44, 52, 415, 706
BspANI GGCC 4 cut(s) 88, 537, 630, 801
BspCNI CTCAG 1 cut(s) 74
BspHI TCATGA 1 cut(s) 588
BspLI GGNNCC 1 cut(s) 413
BspPI GGATC 1 cut(s) 158
BspTNI GGTCTC 1 cut(s) 484
BsrI ACTGG 2 cut(s) 181, 488
BssECI CCNNGG 4 cut(s) 89, 407, 606, 817
BssMI GATC 1 cut(s) 163
BssNI GRCGYC 1 cut(s) 685
BssSI CACGAG 1 cut(s) 883
BssT1I CCWWGG 3 cut(s) 407, 606, 817
Bst2BI CACGAG 1 cut(s) 883
Bst2UI CCWGG 2 cut(s) 678, 978
Bst4CI ACNGT 4 cut(s) 174, 694, 727, 759
Bst6I CTCTTC 1 cut(s) 915
BstACI GRCGYC 1 cut(s) 685
BstAPI GCANNNNNTGC 1 cut(s) 309
BstC8I GCNNGC 2 cut(s) 683, 870
BstDEI CTNAG 3 cut(s) 61, 401, 710
BstDSI CCRYGG 1 cut(s) 89
BstF5I GGATG 5 cut(s) 199, 580, 594, 839, 847
BstHHI GCGC 1 cut(s) 303
BstKTI GATC 1 cut(s) 166
BstMAI GTCTC 3 cut(s) 484, 842, 880
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 3 cut(s) 309, 510, 608
BstNI CCWGG 2 cut(s) 678, 978
BstSCI CCNGG 2 cut(s) 676, 976
BstV1I GCAGC 3 cut(s) 337, 614, 674
BstV2I GAAGAC 1 cut(s) 898
Bsu36I CCTNAGG 1 cut(s) 710
BsuI GTATCC 2 cut(s) 684, 922
BsuRI GGCC 4 cut(s) 88, 537, 630, 801
BtgI CCRYGG 1 cut(s) 89
BtsCI GGATG 5 cut(s) 199, 580, 594, 839, 847
BtsIMutI CAGTG 3 cut(s) 170, 417, 631
Cac8I GCNNGC 2 cut(s) 683, 870
CciI TCATGA 1 cut(s) 588
CfoI GCGC 1 cut(s) 303
Cfr13I GGNCC 2 cut(s) 412, 800
CseI GACGC 1 cut(s) 674
Csp6I GTAC 1 cut(s) 184
CviAII CATG 4 cut(s) 238, 309, 381, 589
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 3 cut(s) 61, 401, 710
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
DraIII CACNNNGTG 1 cut(s) 76
DriI GACNNNNNGTC 1 cut(s) 410
EaeI YGGCCR 2 cut(s) 535, 628
Eam1104I CTCTTC 1 cut(s) 915
Eam1105I GACNNNNNGTC 1 cut(s) 410
EarI CTCTTC 1 cut(s) 915
EciI GGCGGA 1 cut(s) 695
Eco130I CCWWGG 3 cut(s) 407, 606, 817
Eco31I GGTCTC 1 cut(s) 484
Eco32I GATATC 1 cut(s) 814
Eco47I GGWCC 1 cut(s) 412
Eco81I CCTNAGG 1 cut(s) 710
EcoRI GAATTC 1 cut(s) 553
EcoRII CCWGG 2 cut(s) 676, 976
EcoRV GATATC 1 cut(s) 814
EcoT14I CCWWGG 3 cut(s) 407, 606, 817
ErhI CCWWGG 3 cut(s) 407, 606, 817
FaeI CATG 4 cut(s) 241, 312, 384, 592
FalI AAGNNNNNCTT 2 cut(s) 235, 267
FatI CATG 4 cut(s) 237, 308, 380, 588
FauNDI CATATG 1 cut(s) 232
Fnu4HI GCNGC 4 cut(s) 45, 326, 603, 663
FokI GGATG 5 cut(s) 206, 581, 587, 846, 854
Fsp4HI GCNGC 4 cut(s) 45, 326, 603, 663
GlaI GCGC 1 cut(s) 302
GluI GCNGC 4 cut(s) 45, 326, 603, 663
GsuI CTGGAG 1 cut(s) 354
HaeIII GGCC 4 cut(s) 88, 537, 630, 801
HapII CCGG 2 cut(s) 29, 191
HgaI GACGC 1 cut(s) 674
HhaI GCGC 1 cut(s) 303
Hin1I GRCGYC 1 cut(s) 685
Hin1II CATG 4 cut(s) 241, 312, 384, 592
Hin6I GCGC 1 cut(s) 301
HinP1I GCGC 1 cut(s) 301
HindIII AAGCTT 1 cut(s) 318
HinfI GANTC 7 cut(s) 108, 226, 522, 614, 702, 850, 943
HpaII CCGG 2 cut(s) 29, 191
Hpy166II GTNNAC 2 cut(s) 493, 781
Hpy188I TCNGA 5 cut(s) 10, 521, 646, 690, 942
Hpy188III TCNNGA 2 cut(s) 333, 589
Hpy8I GTNNAC 2 cut(s) 493, 781
HpyAV CCTTC 4 cut(s) 237, 469, 540, 824
HpyCH4III ACNGT 4 cut(s) 174, 694, 727, 759
HpyCH4V TGCA 4 cut(s) 128, 218, 467, 602
HpyF10VI GCNNNNNNNGC 3 cut(s) 309, 510, 608
HpyF3I CTNAG 3 cut(s) 61, 401, 710
Hsp92I GRCGYC 1 cut(s) 685
Hsp92II CATG 4 cut(s) 241, 312, 384, 592
HspAI GCGC 1 cut(s) 301
Kzo9I GATC 1 cut(s) 163
Lsp1109I GCAGC 3 cut(s) 337, 614, 674
LweI GCATC 1 cut(s) 257
MaeIII GTNAC 5 cut(s) 76, 174, 727, 759, 766
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 2 cut(s) 898, 932
MlsI TGGCCA 1 cut(s) 630
MluCI AATT 1 cut(s) 553
MluNI TGGCCA 1 cut(s) 630
MlyI GAGTC 4 cut(s) 117, 220, 608, 844
MmeI TCCRAC 1 cut(s) 713
MnlI CCTC 5 cut(s) 713, 784, 802, 879, 916
Mox20I TGGCCA 1 cut(s) 630
MscI TGGCCA 1 cut(s) 630
MseI TTAA 2 cut(s) 314, 716
MslI CAYNNNNRTG 1 cut(s) 72
Msp20I TGGCCA 1 cut(s) 630
MspA1I CMGCKG 1 cut(s) 872
MspI CCGG 2 cut(s) 29, 191
MspR9I CCNGG 2 cut(s) 678, 978
MvaI CCWGG 2 cut(s) 678, 978
MwoI GCNNNNNNNGC 3 cut(s) 309, 510, 608
NdeI CATATG 1 cut(s) 232
NdeII GATC 1 cut(s) 163
NlaIII CATG 4 cut(s) 241, 312, 384, 592
NlaIV GGNNCC 1 cut(s) 413
NmuCI GTSAC 2 cut(s) 76, 759
PagI TCATGA 1 cut(s) 588
PfeI GAWTC 3 cut(s) 522, 702, 943
PkrI GCNGC 4 cut(s) 46, 327, 604, 664
PleI GAGTC 4 cut(s) 116, 220, 608, 844
PpsI GAGTC 4 cut(s) 116, 220, 608, 844
PsiI TTATAA 1 cut(s) 549
Psp6I CCWGG 2 cut(s) 676, 976
PspGI CCWGG 2 cut(s) 676, 976
PspN4I GGNNCC 1 cut(s) 413
PspPI GGNCC 2 cut(s) 412, 800
PvuII CAGCTG 1 cut(s) 872
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 72
SaqAI TTAA 2 cut(s) 314, 716
SatI GCNGC 4 cut(s) 45, 326, 603, 663
Sau3AI GATC 1 cut(s) 163
Sau96I GGNCC 2 cut(s) 412, 800
ScaI AGTACT 1 cut(s) 185
SchI GAGTC 4 cut(s) 117, 220, 608, 844
ScrFI CCNGG 2 cut(s) 678, 978
SfaNI GCATC 1 cut(s) 257
SinI GGWCC 1 cut(s) 412
SmiMI CAYNNNNRTG 1 cut(s) 72
Sse9I AATT 1 cut(s) 553
SsiI CCGC 4 cut(s) 44, 52, 415, 706
StyD4I CCNGG 2 cut(s) 676, 976
StyI CCWWGG 3 cut(s) 407, 606, 817
TaaI ACNGT 4 cut(s) 174, 694, 727, 759
TaqI TCGA 1 cut(s) 262
TasI AATT 1 cut(s) 553
TatI WGTACW 1 cut(s) 183
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 3 cut(s) 522, 702, 943
Tru1I TTAA 2 cut(s) 314, 716
Tru9I TTAA 2 cut(s) 314, 716
TscAI CASTG 3 cut(s) 177, 424, 631
TseFI GTSAC 2 cut(s) 76, 759
TseI GCWGC 3 cut(s) 325, 602, 662
Tsp45I GTSAC 2 cut(s) 76, 759
TspDTI ATGAA 6 cut(s) 56, 297, 369, 546, 605, 898
TspGWI ACGGA 3 cut(s) 272, 587, 903
TspRI CASTG 3 cut(s) 177, 424, 631
VpaK11BI GGWCC 1 cut(s) 412
XapI RAATTY 1 cut(s) 553
ZrmI AGTACT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.