Rh6BG491200

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000218
Physical Location & Seq
Forward (+)
69459282 .. 69459623
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG491200.1

Sequence Viewer

Length: 342 bp
ATGTGGGCCATACAGAATGATCCCAAATTGTGGGAGCAGCCTGAGCAGTTCAAGCCAGAGAGATTTTTAACTCCACAGAAAGAAGCAAACGGTTTCAAGTTGCTGCCATTTGGGACAGGAAGGAGGGGCTGTCCCGGCGAAGGGTTAGCGACCAGAATCGTAGGGCTGGCCTTAGGGTCACTGATCCAGTGTTTCGAGTGGAAGAGAAATGGTGAAGAAATGGTGGACATGAGTGAAGGGGCTGGCCTCACCGTGCCTAAAGCTCAAGCCTTACTAGCGAAGTGCAGGCCACGCCCGATAATGCTAGCCCTACTTTCACATGCAGCTCTAGTCTTTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko00905 ko00943 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 map00140 map00905 map00943 map01100 map01110 map04913 map04917 map04927 map04934
Pfam Domains
Protein Families
p450

Protein Analysis

113

Amino Acids

12.52

Weight (kDa)

8.96

Isoelectric Point (pI)

30.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 88 8.9e-25 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 30
AclWI GGATC 2 cut(s) 14, 178
AfiI CCNNNNNNNGG 3 cut(s) 30, 140, 141
AgsI TTSAA 2 cut(s) 52, 97
AluBI AGCT 2 cut(s) 263, 326
AluI AGCT 2 cut(s) 263, 326
AlwI GGATC 2 cut(s) 14, 178
AoxI GGCC 4 cut(s) 6, 168, 244, 287
ApeKI GCWGC 3 cut(s) 37, 103, 323
AspS9I GGNCC 1 cut(s) 6
AsuC2I CCSGG 1 cut(s) 135
AsuHPI GGTGA 2 cut(s) 224, 241
AsuNHI GCTAGC 1 cut(s) 304
AxyI CCTNAGG 1 cut(s) 172
BbvI GCAGC 3 cut(s) 49, 90, 335
BcnI CCSGG 1 cut(s) 135
BfaI CTAG 3 cut(s) 275, 305, 329
BisI GCNGC 3 cut(s) 38, 104, 324
BlsI GCNGC 3 cut(s) 39, 105, 325
Bme1390I CCNGG 1 cut(s) 135
BmgT120I GGNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 135
BmtI GCTAGC 1 cut(s) 308
Bpu10I CCTNAGC 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 249
BpuMI CCSGG 1 cut(s) 135
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 140, 141
Bse1I ACTGG 1 cut(s) 187
Bse21I CCTNAGG 1 cut(s) 172
BseLI CCNNNNNNNGG 3 cut(s) 30, 140, 141
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 187
BseXI GCAGC 3 cut(s) 49, 90, 335
BsgI GTGCAG 1 cut(s) 304
BshFI GGCC 4 cut(s) 8, 170, 246, 289
BsiSI CCGG 1 cut(s) 135
BslFI GGGAC 2 cut(s) 117, 127
BslI CCNNNNNNNGG 3 cut(s) 30, 140, 141
BsmFI GGGAC 2 cut(s) 117, 127
BsnI GGCC 4 cut(s) 8, 170, 246, 289
Bsp143I GATC 2 cut(s) 19, 183
BspANI GGCC 4 cut(s) 8, 170, 246, 289
BspCNI CTCAG 1 cut(s) 34
BspOI GCTAGC 1 cut(s) 308
BspPI GGATC 2 cut(s) 14, 178
BsrI ACTGG 1 cut(s) 187
BssMI GATC 2 cut(s) 19, 183
Bst4CI ACNGT 2 cut(s) 92, 253
Bst6I CTCTTC 1 cut(s) 197
BstC8I GCNNGC 4 cut(s) 168, 244, 287, 306
BstDEI CTNAG 2 cut(s) 42, 172
BstKTI GATC 2 cut(s) 22, 186
BstMBI GATC 2 cut(s) 19, 183
BstMWI GCNNNNNNNGC 5 cut(s) 43, 52, 135, 275, 291
BstNSI RCATGY 1 cut(s) 323
BstSCI CCNGG 1 cut(s) 133
BstV1I GCAGC 3 cut(s) 49, 90, 335
Bsu36I CCTNAGG 1 cut(s) 172
BsuRI GGCC 4 cut(s) 8, 170, 246, 289
BtsIMutI CAGTG 2 cut(s) 179, 194
Cac8I GCNNGC 4 cut(s) 168, 244, 287, 306
Cfr13I GGNCC 1 cut(s) 6
CviAII CATG 2 cut(s) 229, 320
DdeI CTNAG 2 cut(s) 42, 172
DpnI GATC 2 cut(s) 21, 185
DpnII GATC 2 cut(s) 19, 183
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
Eco81I CCTNAGG 1 cut(s) 172
FaeI CATG 2 cut(s) 232, 323
FaiI YATR 3 cut(s) 11, 230, 321
FaqI GGGAC 2 cut(s) 117, 127
FatI CATG 2 cut(s) 228, 319
Fnu4HI GCNGC 3 cut(s) 38, 104, 324
Fsp4HI GCNGC 3 cut(s) 38, 104, 324
FspBI CTAG 3 cut(s) 275, 305, 329
GluI GCNGC 3 cut(s) 38, 104, 324
HaeIII GGCC 4 cut(s) 8, 170, 246, 289
HapII CCGG 1 cut(s) 135
Hin1II CATG 2 cut(s) 232, 323
HinfI GANTC 1 cut(s) 156
HpaII CCGG 1 cut(s) 135
HphI GGTGA 2 cut(s) 224, 241
Hpy166II GTNNAC 1 cut(s) 226
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 3 cut(s) 114, 134, 230
HpyCH4III ACNGT 2 cut(s) 92, 253
HpyCH4V TGCA 2 cut(s) 285, 323
HpyF10VI GCNNNNNNNGC 5 cut(s) 43, 52, 135, 275, 291
HpyF3I CTNAG 2 cut(s) 42, 172
Hsp92II CATG 2 cut(s) 232, 323
Kzo9I GATC 2 cut(s) 19, 183
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 9 cut(s) 54, 69, 102, 148, 152, 166, 200, 228, 271
Lsp1109I GCAGC 3 cut(s) 49, 90, 335
MaeI CTAG 3 cut(s) 275, 305, 329
MaeIII GTNAC 1 cut(s) 177
MalI GATC 2 cut(s) 21, 185
MboI GATC 2 cut(s) 19, 183
MboII GAAGA 2 cut(s) 214, 227
MluCI AATT 1 cut(s) 26
MnlI CCTC 2 cut(s) 117, 257
MseI TTAA 1 cut(s) 68
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 1 cut(s) 135
MwoI GCNNNNNNNGC 5 cut(s) 43, 52, 135, 275, 291
NciI CCSGG 1 cut(s) 135
NdeII GATC 2 cut(s) 19, 183
NheI GCTAGC 1 cut(s) 304
NlaIII CATG 2 cut(s) 232, 323
NmuCI GTSAC 1 cut(s) 177
NspI RCATGY 1 cut(s) 323
PfeI GAWTC 1 cut(s) 156
PflMI CCANNNNNTGG 1 cut(s) 30
PkrI GCNGC 3 cut(s) 39, 105, 325
PspPI GGNCC 1 cut(s) 6
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 3 cut(s) 38, 104, 324
Sau3AI GATC 2 cut(s) 19, 183
Sau96I GGNCC 1 cut(s) 6
ScrFI CCNGG 1 cut(s) 135
SetI ASST 2 cut(s) 265, 328
SmlI CTYRAG 1 cut(s) 264
SmoI CTYRAG 1 cut(s) 264
Sse9I AATT 1 cut(s) 26
SspMI CTAG 3 cut(s) 275, 305, 329
StyD4I CCNGG 1 cut(s) 133
TaaI ACNGT 2 cut(s) 92, 253
TaqI TCGA 1 cut(s) 195
TasI AATT 1 cut(s) 26
TfiI GAWTC 1 cut(s) 156
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TscAI CASTG 2 cut(s) 186, 194
TseFI GTSAC 1 cut(s) 177
TseI GCWGC 3 cut(s) 37, 103, 323
Tsp45I GTSAC 1 cut(s) 177
TspRI CASTG 2 cut(s) 186, 194
Van91I CCANNNNNTGG 1 cut(s) 30
XceI RCATGY 1 cut(s) 323
XspI CTAG 3 cut(s) 275, 305, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.