RchiOBHm_Chr2g0106831

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000218
Physical Location & Seq
Reverse (-)
18226207 .. 18226716
510 bp
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UTR
Exon/CDS
Intron
PRQ48090

Sequence Viewer

Length: 510 bp
ATGCTTTTGGCGGGTACTGATTCATCATCCTTGACACTGGAATGGGCCATGTTCAATCTGCTCAACCATCCTGAGGTGCTAAAAAGGGCTAGAGCTGAACTGGATGCTGAATTTGGACAAGAACGCTTACTAGACGAACCAGATATCTTCAAACTACCTTACCTACAAAGTATCATCTCCGAGACTCTCCGATTGTACCCTACAGCGCCACTACTAGTACCACATTATACATCTGATGACTGCACCATTGGAGGATTTGACGTGTCATGTGACACGATAGTAATGATCAGTGCGTGGGCCATACACAGAGATCCAACGTTGTGGGATAGCTTCAAGCCTGAGAGGTTTGCAAATGGTGGAGAAGCTTCAAGTCTGAGAGGTTTGCAAATGGTGGAGAAGAGCCATACAAGCTCATGCCATTTGGACAAGGAAGAACGGCTTGGCCTGGCATGGGCTTGGCCTGGCTTTGGGATCATTGATTCAATTTTTCGATTGGGAAAAAGTCAGTGA

Protein Analysis

169

Amino Acids

18.98

Weight (kDa)

4.93

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 119 1.6e-38 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 11
AclI AACGTT 1 cut(s) 317
AclWI GGATC 2 cut(s) 305, 479
AcsI RAATTY 1 cut(s) 110
AfaI GTAC 3 cut(s) 16, 197, 219
AfiI CCNNNNNNNGG 3 cut(s) 73, 451, 467
AflIII ACRYGT 1 cut(s) 261
AgsI TTSAA 5 cut(s) 55, 151, 334, 369, 483
AhlI ACTAGT 1 cut(s) 214
AjiI CACGTC 1 cut(s) 262
AjnI CCWGG 2 cut(s) 444, 460
AjuI GAANNNNNNNTTGG 2 cut(s) 423, 455
AluBI AGCT 4 cut(s) 95, 330, 365, 411
AluI AGCT 4 cut(s) 95, 330, 365, 411
Alw26I GTCTC 1 cut(s) 176
AlwI GGATC 2 cut(s) 305, 479
AoxI GGCC 4 cut(s) 45, 297, 442, 458
ApoI RAATTY 1 cut(s) 110
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 2 cut(s) 45, 297
AxyI CCTNAGG 1 cut(s) 72
BccI CCATC 1 cut(s) 75
BceAI ACGGC 1 cut(s) 452
BciT130I CCWGG 2 cut(s) 446, 462
BclI TGATCA 1 cut(s) 285
BcoDI GTCTC 1 cut(s) 176
BcuI ACTAGT 1 cut(s) 214
BfaI CTAG 3 cut(s) 90, 131, 215
BfmI CTRYAG 1 cut(s) 201
BfoI RGCGCY 1 cut(s) 209
Bme1390I CCNGG 2 cut(s) 446, 462
BmgBI CACGTC 1 cut(s) 262
BmgT120I GGNCC 2 cut(s) 45, 297
BmrFI CCNGG 2 cut(s) 446, 462
BmsI GCATC 1 cut(s) 94
Bsc4I CCNNNNNNNGG 3 cut(s) 73, 451, 467
Bse1I ACTGG 2 cut(s) 42, 105
Bse21I CCTNAGG 1 cut(s) 72
BseBI CCWGG 2 cut(s) 446, 462
BseGI GGATG 3 cut(s) 26, 67, 109
BseLI CCNNNNNNNGG 3 cut(s) 73, 451, 467
BseMII CTCAG 3 cut(s) 63, 330, 365
BseNI ACTGG 2 cut(s) 42, 105
BsgI GTGCAG 1 cut(s) 226
BshFI GGCC 4 cut(s) 47, 299, 444, 460
BslI CCNNNNNNNGG 3 cut(s) 73, 451, 467
BsmAI GTCTC 1 cut(s) 176
BsnI GGCC 4 cut(s) 47, 299, 444, 460
Bsp143I GATC 3 cut(s) 285, 310, 471
BspACI CCGC 1 cut(s) 11
BspANI GGCC 4 cut(s) 47, 299, 444, 460
BspCNI CTCAG 3 cut(s) 64, 331, 366
BspPI GGATC 2 cut(s) 305, 479
BspQI GCTCTTC 1 cut(s) 392
BsrI ACTGG 2 cut(s) 42, 105
BssMI GATC 3 cut(s) 285, 310, 471
Bst2UI CCWGG 2 cut(s) 446, 462
Bst6I CTCTTC 1 cut(s) 392
BstDEI CTNAG 3 cut(s) 72, 339, 374
BstF5I GGATG 3 cut(s) 26, 67, 109
BstH2I RGCGCY 1 cut(s) 209
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 3 cut(s) 288, 313, 474
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 3 cut(s) 285, 310, 471
BstMWI GCNNNNNNNGC 1 cut(s) 408
BstNI CCWGG 2 cut(s) 446, 462
BstSCI CCNGG 2 cut(s) 444, 460
BstSFI CTRYAG 1 cut(s) 201
BstX2I RGATCY 1 cut(s) 310
BstXI CCANNNNNNTGG 1 cut(s) 321
BstYI RGATCY 1 cut(s) 310
Bsu36I CCTNAGG 1 cut(s) 72
BsuRI GGCC 4 cut(s) 47, 299, 444, 460
BtrI CACGTC 1 cut(s) 262
BtsCI GGATG 3 cut(s) 26, 67, 109
BtsIMutI CAGTG 2 cut(s) 35, 295
CfoI GCGC 1 cut(s) 208
Cfr13I GGNCC 2 cut(s) 45, 297
Csp6I GTAC 3 cut(s) 15, 196, 218
CviAII CATG 4 cut(s) 49, 267, 414, 450
CviQI GTAC 3 cut(s) 15, 196, 218
DdeI CTNAG 3 cut(s) 72, 339, 374
DpnI GATC 3 cut(s) 287, 312, 473
DpnII GATC 3 cut(s) 285, 310, 471
Eam1104I CTCTTC 1 cut(s) 392
EarI CTCTTC 1 cut(s) 392
Eco32I GATATC 1 cut(s) 145
Eco81I CCTNAGG 1 cut(s) 72
EcoRII CCWGG 2 cut(s) 444, 460
EcoRV GATATC 1 cut(s) 145
FaeI CATG 4 cut(s) 52, 270, 417, 453
FaiI YATR 7 cut(s) 50, 228, 268, 302, 405, 415, 451
FalI AAGNNNNNCTT 2 cut(s) 423, 455
FatI CATG 4 cut(s) 48, 266, 413, 449
FauI CCCGC 1 cut(s) 4
FbaI TGATCA 1 cut(s) 285
FokI GGATG 3 cut(s) 13, 54, 116
FspBI CTAG 3 cut(s) 90, 131, 215
GlaI GCGC 1 cut(s) 207
HaeII RGCGCY 1 cut(s) 209
HaeIII GGCC 4 cut(s) 47, 299, 444, 460
HhaI GCGC 1 cut(s) 208
Hin1II CATG 4 cut(s) 52, 270, 417, 453
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HindIII AAGCTT 1 cut(s) 363
HinfI GANTC 3 cut(s) 20, 184, 479
Hpy188I TCNGA 4 cut(s) 181, 191, 235, 375
Hpy188III TCNNGA 1 cut(s) 71
HpyCH4IV ACGT 2 cut(s) 261, 317
HpyCH4V TGCA 3 cut(s) 243, 350, 385
HpyF10VI GCNNNNNNNGC 1 cut(s) 408
HpyF3I CTNAG 3 cut(s) 72, 339, 374
HpySE526I ACGT 2 cut(s) 261, 317
Hsp92II CATG 4 cut(s) 52, 270, 417, 453
HspAI GCGC 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 285
Kzo9I GATC 3 cut(s) 285, 310, 471
LguI GCTCTTC 1 cut(s) 392
LpnPI CCDG 9 cut(s) 23, 84, 86, 153, 351, 431, 447, 458, 474
LweI GCATC 1 cut(s) 94
MaeI CTAG 3 cut(s) 90, 131, 215
MaeII ACGT 2 cut(s) 261, 317
MaeIII GTNAC 1 cut(s) 269
MalI GATC 3 cut(s) 287, 312, 473
MboI GATC 3 cut(s) 285, 310, 471
MboII GAAGA 3 cut(s) 139, 409, 443
MflI RGATCY 1 cut(s) 310
MluCI AATT 2 cut(s) 110, 483
MlyI GAGTC 1 cut(s) 178
MmeI TCCRAC 1 cut(s) 338
MnlI CCTC 4 cut(s) 67, 245, 336, 371
MslI CAYNNNNRTG 1 cut(s) 40
MspR9I CCNGG 2 cut(s) 446, 462
MvaI CCWGG 2 cut(s) 446, 462
MwoI GCNNNNNNNGC 1 cut(s) 408
NdeII GATC 3 cut(s) 285, 310, 471
NlaIII CATG 4 cut(s) 52, 270, 417, 453
NmuCI GTSAC 1 cut(s) 269
PciSI GCTCTTC 1 cut(s) 392
PfeI GAWTC 2 cut(s) 20, 479
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
Psp1406I AACGTT 1 cut(s) 317
Psp6I CCWGG 2 cut(s) 444, 460
PspGI CCWGG 2 cut(s) 444, 460
PspPI GGNCC 2 cut(s) 45, 297
PsuI RGATCY 1 cut(s) 310
RsaI GTAC 3 cut(s) 16, 197, 219
RsaNI GTAC 3 cut(s) 15, 196, 218
RseI CAYNNNNRTG 1 cut(s) 40
SapI GCTCTTC 1 cut(s) 392
Sau3AI GATC 3 cut(s) 285, 310, 471
Sau96I GGNCC 2 cut(s) 45, 297
SchI GAGTC 1 cut(s) 178
ScrFI CCNGG 2 cut(s) 446, 462
SfaNI GCATC 1 cut(s) 94
SfcI CTRYAG 1 cut(s) 201
SmiMI CAYNNNNRTG 1 cut(s) 40
SpeI ACTAGT 1 cut(s) 214
Sse9I AATT 2 cut(s) 110, 483
SsiI CCGC 1 cut(s) 11
SspMI CTAG 3 cut(s) 90, 131, 215
StyD4I CCNGG 2 cut(s) 444, 460
TaiI ACGT 2 cut(s) 264, 320
TaqI TCGA 1 cut(s) 490
TasI AATT 2 cut(s) 110, 483
TfiI GAWTC 2 cut(s) 20, 479
TscAI CASTG 2 cut(s) 42, 295
TseFI GTSAC 1 cut(s) 269
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 1 cut(s) 12
TspRI CASTG 2 cut(s) 42, 295
XapI RAATTY 1 cut(s) 110
XspI CTAG 3 cut(s) 90, 131, 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.