Rh2DG285700

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000218
Physical Location & Seq
Reverse (-)
32968097 .. 32973234
5138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG285700.1

Sequence Viewer

Length: 1044 bp
ATGGTAGACATCTTCTCTTACACTTCTCTCTCCATCATCGTGTGCCTGGTCATCACTCTAAAGCTGTTTAAACTGCAACGTTACCCTAACCTCCCTCCAAGTCCTTCCTTATGTCTTCCGATTATCAATCACCTCTACCTTCTCAAACCCCCGGTCCACCGCACCTTCCACCGGCTCTCACAGAAACACGGTCCCATTTTCTCCCTCTGGTTCGGTTCCCGCTACGTGGTCATTATCTCTTCCTCCTCAGCCGTGCAAGAATGCTTCACCAAAAACGACATCGTGTTGGCAAATCGTCCCCCTACGCTCCTGACTAAGCACTTTGCGTACAATAGCACCACCATTGCGAGCTCCCCCTACGGCGATCACTGGCGAAATGTTCGACGTATCGGCACTGTCGAGGTCTTGTCCACCAGCCGGCTCAACTCTTTCTCAGATGTCAGAAAAGAAGAAGTCAAGCACTTGCTCCGTAAGCTTTTTCTAAACACAAAAGAAGAAGAAGGTCGTTTTGTGAAAGTGGAGCTGAGGTCTATGTTATATGAGCTGACCTTCAACAACATAATGACAATGATGGTGGGGAAGAGGTATGTTGGGGACCATGTTGCGAGCAAGAAAGAGGGGAAGGAGTTCATTGAGATCATGGATGAGGTGTTTTCGTACAGCTCGGGAACCAACCCAGGAGAATTCATGCCCTTTTTCAGATGGTTTTGTGGTAATGGTTATGAGAGGAAGGTGAAGAAGTTGGGCAAGAGAGCAGATATGTTTTTGCAACGTCTGATTGATGAGCACCGGAATAAGAGTGCTTCAGAGAGTAAAAATACCATGATCGACCACATGCTTTCTCAGCAGGAGTCAGAACCTGAATATTACACCGATGAGATTATCAAAGGACTTATACTGGACACGATCTATCATCTGGTAGAGTCATCTAGATGCGATGTTATCAAAAATGGACCTCCAGTTGTTAATTGGAGATTTTTGTCTACTGACTTGCATGACCTTTTTCTATTTCGGCAAGATTTGAATGATGGGCTGGATCAGTGA

Protein Analysis

347

Amino Acids

40.33

Weight (kDa)

8.92

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 33 - 301 5.8e-32 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 6, 983
AciI CCGC 2 cut(s) 160, 220
AclI AACGTT 1 cut(s) 79
AcsI RAATTY 1 cut(s) 683
AcuI CTGAAG 1 cut(s) 789
AfaI GTAC 2 cut(s) 329, 659
AfiI CCNNNNNNNGG 3 cut(s) 171, 226, 417
AgsI TTSAA 2 cut(s) 553, 1024
AjnI CCWGG 2 cut(s) 45, 676
AluBI AGCT 6 cut(s) 64, 351, 475, 523, 544, 663
AluI AGCT 6 cut(s) 64, 351, 475, 523, 544, 663
Alw21I GWGCWC 2 cut(s) 353, 789
AlwNI CAGNNNCTG 1 cut(s) 860
Ama87I CYCGRG 1 cut(s) 664
ApoI RAATTY 1 cut(s) 683
ArsI GACNNNNNNTTYG 2 cut(s) 138, 170
Asp700I GAANNNNTTC 1 cut(s) 626
AspS9I GGNCC 4 cut(s) 154, 191, 595, 953
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 3 cut(s) 122, 259, 745
AvaI CYCGRG 1 cut(s) 664
AvaII GGWCC 4 cut(s) 154, 191, 595, 953
BanII GRGCYC 1 cut(s) 353
BbsI GAAGAC 1 cut(s) 107
Bbv12I GWGCWC 2 cut(s) 353, 789
BbvCI CCTCAGC 2 cut(s) 247, 524
BccI CCATC 4 cut(s) 41, 565, 696, 1022
BceAI ACGGC 2 cut(s) 236, 376
BciT130I CCWGG 2 cut(s) 47, 678
BcnI CCSGG 1 cut(s) 152
BfaI CTAG 1 cut(s) 930
Bme1390I CCNGG 3 cut(s) 47, 152, 678
Bme18I GGWCC 4 cut(s) 154, 191, 595, 953
BmeT110I CYCGRG 1 cut(s) 664
BmgT120I GGNCC 4 cut(s) 154, 191, 595, 953
BmiI GGNNCC 4 cut(s) 193, 217, 596, 670
BmrFI CCNGG 3 cut(s) 47, 152, 678
BmsI GCATC 1 cut(s) 923
BpiI GAAGAC 1 cut(s) 107
BpmI CTGGAG 1 cut(s) 942
Bpu10I CCTNAGC 2 cut(s) 247, 524
BpuMI CCSGG 1 cut(s) 152
BsaAI YACGTR 1 cut(s) 226
BsaJI CCNNGG 2 cut(s) 150, 676
BsaWI WCCGGW 1 cut(s) 789
BsaXI ACNNNNNCTCC 2 cut(s) 512, 542
Bsc4I CCNNNNNNNGG 3 cut(s) 171, 226, 417
Bse118I RCCGGY 2 cut(s) 171, 417
Bse1I ACTGG 3 cut(s) 374, 903, 959
Bse3DI GCAATG 1 cut(s) 342
BseBI CCWGG 2 cut(s) 47, 678
BseDI CCNNGG 2 cut(s) 150, 676
BseGI GGATG 1 cut(s) 649
BseLI CCNNNNNNNGG 3 cut(s) 171, 226, 417
BseMI GCAATG 1 cut(s) 342
BseMII CTCAG 4 cut(s) 261, 447, 515, 857
BseNI ACTGG 3 cut(s) 374, 903, 959
BseRI GAGGAG 1 cut(s) 235
BsiHKAI GWGCWC 2 cut(s) 353, 789
BsiHKCI CYCGRG 1 cut(s) 664
BsiSI CCGG 4 cut(s) 152, 172, 418, 790
BslFI GGGAC 3 cut(s) 177, 282, 608
BslI CCNNNNNNNGG 3 cut(s) 171, 226, 417
BsmFI GGGAC 3 cut(s) 177, 282, 608
BsmI GAATGC 1 cut(s) 266
BsoBI CYCGRG 1 cut(s) 664
Bsp1286I GDGCHC 2 cut(s) 353, 789
Bsp143I GATC 5 cut(s) 364, 636, 825, 906, 1036
BspACI CCGC 2 cut(s) 160, 220
BspCNI CTCAG 4 cut(s) 260, 446, 516, 856
BspLI GGNNCC 4 cut(s) 193, 217, 596, 670
BsrDI GCAATG 1 cut(s) 342
BsrFI RCCGGY 2 cut(s) 171, 417
BsrI ACTGG 3 cut(s) 374, 903, 959
BssAI RCCGGY 2 cut(s) 171, 417
BssECI CCNNGG 2 cut(s) 150, 676
BssMI GATC 5 cut(s) 364, 636, 825, 906, 1036
Bst2UI CCWGG 2 cut(s) 47, 678
Bst4CI ACNGT 2 cut(s) 191, 397
Bst6I CTCTTC 2 cut(s) 244, 575
BstBAI YACGTR 1 cut(s) 226
BstC8I GCNNGC 3 cut(s) 349, 419, 607
BstDEI CTNAG 5 cut(s) 247, 315, 433, 524, 843
BstF5I GGATG 1 cut(s) 649
BstKTI GATC 5 cut(s) 367, 639, 828, 909, 1039
BstMBI GATC 5 cut(s) 364, 636, 825, 906, 1036
BstMWI GCNNNNNNNGC 2 cut(s) 472, 844
BstNI CCWGG 2 cut(s) 47, 678
BstNSI RCATGY 1 cut(s) 838
BstSCI CCNGG 3 cut(s) 45, 150, 676
BstV2I GAAGAC 1 cut(s) 107
BtgZI GCGATG 1 cut(s) 951
BtsCI GGATG 1 cut(s) 649
BtsIMutI CAGTG 2 cut(s) 367, 393
Cac8I GCNNGC 3 cut(s) 349, 419, 607
CaiI CAGNNNCTG 1 cut(s) 860
Cfr10I RCCGGY 2 cut(s) 171, 417
Cfr13I GGNCC 4 cut(s) 154, 191, 595, 953
Csp6I GTAC 2 cut(s) 328, 658
CspCI CAANNNNNGTGG 2 cut(s) 555, 590
CviAII CATG 6 cut(s) 599, 640, 688, 823, 835, 995
CviQI GTAC 2 cut(s) 328, 658
DdeI CTNAG 5 cut(s) 247, 315, 433, 524, 843
DpnI GATC 5 cut(s) 366, 638, 827, 908, 1038
DpnII GATC 5 cut(s) 364, 636, 825, 906, 1036
DraI TTTAAA 1 cut(s) 70
Eam1104I CTCTTC 2 cut(s) 244, 575
EarI CTCTTC 2 cut(s) 244, 575
Ecl136II GAGCTC 1 cut(s) 351
Eco24I GRGCYC 1 cut(s) 353
Eco47I GGWCC 4 cut(s) 154, 191, 595, 953
Eco53kI GAGCTC 1 cut(s) 351
Eco57I CTGAAG 1 cut(s) 789
Eco88I CYCGRG 1 cut(s) 664
EcoICRI GAGCTC 1 cut(s) 351
EcoRI GAATTC 1 cut(s) 683
EcoRII CCWGG 2 cut(s) 45, 676
EcoT38I GRGCYC 1 cut(s) 353
FaeI CATG 6 cut(s) 602, 643, 691, 826, 838, 998
FaqI GGGAC 3 cut(s) 177, 282, 608
FatI CATG 6 cut(s) 598, 639, 687, 822, 834, 994
FauI CCCGC 1 cut(s) 227
FblI GTMKAC 2 cut(s) 6, 983
FokI GGATG 1 cut(s) 656
FriOI GRGCYC 1 cut(s) 353
FspBI CTAG 1 cut(s) 930
GsuI CTGGAG 1 cut(s) 942
HapII CCGG 4 cut(s) 152, 172, 418, 790
Hin1II CATG 6 cut(s) 602, 643, 691, 826, 838, 998
HindIII AAGCTT 1 cut(s) 473
HinfI GANTC 2 cut(s) 851, 923
HpaII CCGG 4 cut(s) 152, 172, 418, 790
HphI GGTGA 3 cut(s) 122, 259, 745
Hpy166II GTNNAC 4 cut(s) 7, 157, 411, 984
Hpy188I TCNGA 7 cut(s) 120, 436, 443, 701, 777, 808, 856
Hpy188III TCNNGA 3 cut(s) 310, 666, 930
Hpy8I GTNNAC 4 cut(s) 7, 157, 411, 984
Hpy99I CGWCG 1 cut(s) 387
HpyAV CCTTC 7 cut(s) 114, 149, 175, 494, 559, 616, 724
HpyCH4III ACNGT 2 cut(s) 191, 397
HpyCH4IV ACGT 4 cut(s) 79, 225, 385, 772
HpyCH4V TGCA 4 cut(s) 76, 256, 769, 994
HpyF10VI GCNNNNNNNGC 2 cut(s) 472, 844
HpyF3I CTNAG 5 cut(s) 247, 315, 433, 524, 843
HpySE526I ACGT 4 cut(s) 79, 225, 385, 772
Hsp92II CATG 6 cut(s) 602, 643, 691, 826, 838, 998
KroI GCCGGC 1 cut(s) 417
KroNI GCCGGC 1 cut(s) 419
Kzo9I GATC 5 cut(s) 364, 636, 825, 906, 1036
LmnI GCTCC 4 cut(s) 312, 356, 471, 520
LweI GCATC 1 cut(s) 923
MaeI CTAG 1 cut(s) 930
MaeII ACGT 4 cut(s) 79, 225, 385, 772
MaeIII GTNAC 1 cut(s) 80
MalI GATC 5 cut(s) 366, 638, 827, 908, 1038
MboI GATC 5 cut(s) 364, 636, 825, 906, 1036
MboII GAAGA 8 cut(s) 4, 107, 231, 461, 506, 509, 592, 748
MhlI GDGCHC 2 cut(s) 353, 789
MluCI AATT 2 cut(s) 683, 967
MlyI GAGTC 2 cut(s) 860, 932
MroNI GCCGGC 1 cut(s) 417
MroXI GAANNNNTTC 1 cut(s) 626
MseI TTAA 2 cut(s) 69, 966
MslI CAYNNNNRTG 2 cut(s) 38, 931
MspI CCGG 4 cut(s) 152, 172, 418, 790
MspR9I CCNGG 3 cut(s) 47, 152, 678
MssI GTTTAAAC 1 cut(s) 70
Mva1269I GAATGC 1 cut(s) 266
MvaI CCWGG 2 cut(s) 47, 678
MwoI GCNNNNNNNGC 2 cut(s) 472, 844
NaeI GCCGGC 1 cut(s) 419
NciI CCSGG 1 cut(s) 152
NdeII GATC 5 cut(s) 364, 636, 825, 906, 1036
NgoMIV GCCGGC 1 cut(s) 417
NlaIII CATG 6 cut(s) 602, 643, 691, 826, 838, 998
NlaIV GGNNCC 4 cut(s) 193, 217, 596, 670
NspI RCATGY 1 cut(s) 838
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PctI GAATGC 1 cut(s) 266
PdiI GCCGGC 1 cut(s) 419
PdmI GAANNNNTTC 1 cut(s) 626
PleI GAGTC 2 cut(s) 859, 931
PmeI GTTTAAAC 1 cut(s) 70
PpsI GAGTC 2 cut(s) 859, 931
Ppu21I YACGTR 1 cut(s) 226
Psp124BI GAGCTC 1 cut(s) 353
Psp1406I AACGTT 1 cut(s) 79
Psp6I CCWGG 2 cut(s) 45, 676
PspGI CCWGG 2 cut(s) 45, 676
PspN4I GGNNCC 4 cut(s) 193, 217, 596, 670
PspPI GGNCC 4 cut(s) 154, 191, 595, 953
PstNI CAGNNNCTG 1 cut(s) 860
RsaI GTAC 2 cut(s) 329, 659
RsaNI GTAC 2 cut(s) 328, 658
RseI CAYNNNNRTG 2 cut(s) 38, 931
SacI GAGCTC 1 cut(s) 353
SaqAI TTAA 2 cut(s) 69, 966
Sau3AI GATC 5 cut(s) 364, 636, 825, 906, 1036
Sau96I GGNCC 4 cut(s) 154, 191, 595, 953
SchI GAGTC 2 cut(s) 860, 932
ScrFI CCNGG 3 cut(s) 47, 152, 678
SduI GDGCHC 2 cut(s) 353, 789
SfaNI GCATC 1 cut(s) 923
SinI GGWCC 4 cut(s) 154, 191, 595, 953
SmiMI CAYNNNNRTG 2 cut(s) 38, 931
Sse9I AATT 2 cut(s) 683, 967
SsiI CCGC 2 cut(s) 160, 220
SspI AATATT 1 cut(s) 866
SspMI CTAG 1 cut(s) 930
SstI GAGCTC 1 cut(s) 353
StyD4I CCNGG 3 cut(s) 45, 150, 676
TaaI ACNGT 2 cut(s) 191, 397
TaiI ACGT 4 cut(s) 82, 228, 388, 775
TaqI TCGA 3 cut(s) 382, 399, 828
TasI AATT 2 cut(s) 683, 967
Tru1I TTAA 2 cut(s) 69, 966
Tru9I TTAA 2 cut(s) 69, 966
TscAI CASTG 2 cut(s) 374, 400
TspDTI ATGAA 2 cut(s) 619, 676
TspGWI ACGGA 1 cut(s) 458
TspRI CASTG 2 cut(s) 374, 400
VpaK11BI GGWCC 4 cut(s) 154, 191, 595, 953
XapI RAATTY 1 cut(s) 683
XbaI TCTAGA 1 cut(s) 929
XceI RCATGY 1 cut(s) 838
XcmI CCANNNNNNNNNTGG 1 cut(s) 966
XmiI GTMKAC 2 cut(s) 6, 983
XmnI GAANNNNTTC 1 cut(s) 626
XspI CTAG 1 cut(s) 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.