Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031470.1

Orthogroup ID

OG0000218

Physical Location & Seq

Genomic Coordinates Reverse (-)

134 .. 676

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031470.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

aaccacccgcatgtattgaagaaggctagagcggaattggattctcatctcggtccagatcgcgtagtggacgagcctgatatcccaaaactgccttacctacaaagcatcgtgtccgagactctccgactctaccctgcagccccacttctactgccgcatctttcatctgattactgcaccatcggcgggtttgacgtgccacgcgacacaatggtgttgatcaatgcatgggctctacatagagaccccgcgctgtgggaggatcccgaaagctttaagcctgagaggtttgaaaacggtggtgatgagtcgcacaagctcatgtcgtttgggctcggacgaagggcttgccccggagctggtctggctcaacgtgtggtaggcttgactttggggtcgttaattcaatgctttgaatgggagagagttggtgaaaaagagattgacatgaaagaagggaaaggaatcaccatgcctaaagcggtgcccttggaagctatgtgtaaggcacgccccattgtgaacaaatttctcacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00905 ko00943 ko00980 ko01100 ko01110 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00905 map00943 map00980 map01100 map01110 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

180

Amino Acids

20.03

Weight (kDa)

6.09

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca	FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica	MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica	Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis	pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis	RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata	RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora	Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa	Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha	Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana	Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	397
AccB1I	GGYRCC	1 cut(s)	487
AccBSI	CCGCTC	1 cut(s)	32
AccII	CGCG	3 cut(s)	63, 207, 254
AciI	CCGC	6 cut(s)	8, 32, 158, 189, 252, 485
AclWI	GGATC	2 cut(s)	260, 273
AcsI	RAATTY	1 cut(s)	530
AfiI	CCNNNNNNNGG	3 cut(s)	189, 258, 362
AflIII	ACRYGT	1 cut(s)	376
AgsI	TTSAA	4 cut(s)	19, 296, 410, 419
AjiI	CACGTC	1 cut(s)	199
AleI	CACNNNNGTG	1 cut(s)	215
AluBI	AGCT	4 cut(s)	276, 322, 362, 500
AluI	AGCT	4 cut(s)	276, 322, 362, 500
Alw26I	GTCTC	2 cut(s)	113, 240
AlwI	GGATC	2 cut(s)	260, 273
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	530
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	1 cut(s)	53
AsuC2I	CCSGG	1 cut(s)	357
AsuHPI	GGTGA	3 cut(s)	317, 446, 463
AvaII	GGWCC	1 cut(s)	53
BaeGI	GKGCMC	1 cut(s)	492
BamHI	GGATCC	1 cut(s)	265
BanI	GGYRCC	1 cut(s)	487
BanII	GRGCYC	2 cut(s)	238, 339
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	1 cut(s)	191
BcgI	CGANNNNNNTGC	2 cut(s)	333, 367
BclI	TGATCA	1 cut(s)	222
BcnI	CCSGG	1 cut(s)	357
BcoDI	GTCTC	2 cut(s)	113, 240
BfaI	CTAG	1 cut(s)	27
BfmI	CTRYAG	1 cut(s)	138
BisI	GCNGC	2 cut(s)	141, 158
BlsI	GCNGC	2 cut(s)	142, 159
Bme1390I	CCNGG	1 cut(s)	357
Bme18I	GGWCC	1 cut(s)	53
BmgBI	CACGTC	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	2 cut(s)	267, 489
BmrFI	CCNGG	1 cut(s)	357
BmsI	GCATC	2 cut(s)	117, 169
BpuMI	CCSGG	1 cut(s)	357
BsaBI	GATNNNNATC	1 cut(s)	45
BsaI	GGTCTC	1 cut(s)	240
BsaJI	CCNNGG	2 cut(s)	355, 492
Bsc4I	CCNNNNNNNGG	3 cut(s)	189, 258, 362
Bse8I	GATNNNNATC	1 cut(s)	45
BseDI	CCNNGG	2 cut(s)	355, 492
BseJI	GATNNNNATC	1 cut(s)	45
BseLI	CCNNNNNNNGG	3 cut(s)	189, 258, 362
BseMII	CTCAG	1 cut(s)	276
BseSI	GKGCMC	1 cut(s)	492
BseXI	GCAGC	1 cut(s)	152
BsgI	GTGCAG	1 cut(s)	163
Bsh1236I	CGCG	3 cut(s)	63, 207, 254
BshNI	GGYRCC	1 cut(s)	487
BsiSI	CCGG	1 cut(s)	357
BslI	CCNNNNNNNGG	3 cut(s)	189, 258, 362
BsmAI	GTCTC	2 cut(s)	113, 240
Bso31I	GGTCTC	1 cut(s)	240
Bsp1286I	GDGCHC	3 cut(s)	238, 339, 492
Bsp143I	GATC	3 cut(s)	58, 222, 265
BspACI	CCGC	6 cut(s)	8, 32, 158, 189, 252, 485
BspCNI	CTCAG	1 cut(s)	277
BspFNI	CGCG	3 cut(s)	63, 207, 254
BspLI	GGNNCC	2 cut(s)	267, 489
BspMAI	CTGCAG	1 cut(s)	142
BspPI	GGATC	2 cut(s)	260, 273
BspT107I	GGYRCC	1 cut(s)	487
BspTNI	GGTCTC	1 cut(s)	240
BsrBI	CCGCTC	1 cut(s)	32
BssECI	CCNNGG	2 cut(s)	355, 492
BssMI	GATC	3 cut(s)	58, 222, 265
BssT1I	CCWWGG	1 cut(s)	492
Bst4CI	ACNGT	1 cut(s)	302
BstC8I	GCNNGC	2 cut(s)	352, 514
BstDEI	CTNAG	1 cut(s)	285
BstFNI	CGCG	3 cut(s)	63, 207, 254
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	3 cut(s)	61, 225, 268
BstMAI	GTCTC	2 cut(s)	113, 240
BstMBI	GATC	3 cut(s)	58, 222, 265
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 368
BstNSI	RCATGY	1 cut(s)	14
BstSCI	CCNGG	1 cut(s)	355
BstSFI	CTRYAG	1 cut(s)	138
BstSLI	GKGCMC	1 cut(s)	492
BstUI	CGCG	3 cut(s)	63, 207, 254
BstV1I	GCAGC	1 cut(s)	152
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
BtrI	CACGTC	1 cut(s)	199
Cac8I	GCNNGC	2 cut(s)	352, 514
CfoI	GCGC	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	53
CviAII	CATG	5 cut(s)	11, 231, 325, 451, 475
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	3 cut(s)	60, 224, 267
DpnII	GATC	3 cut(s)	58, 222, 265
DrdI	GACNNNNNNGTC	1 cut(s)	397
DseDI	GACNNNNNNGTC	1 cut(s)	397
Eco130I	CCWWGG	1 cut(s)	492
Eco24I	GRGCYC	2 cut(s)	238, 339
Eco31I	GGTCTC	1 cut(s)	240
Eco32I	GATATC	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	53
EcoRV	GATATC	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	492
EcoT22I	ATGCAT	1 cut(s)	232
EcoT38I	GRGCYC	2 cut(s)	238, 339
ErhI	CCWWGG	1 cut(s)	492
FaeI	CATG	5 cut(s)	14, 234, 328, 454, 478
FaiI	YATR	7 cut(s)	12, 232, 243, 326, 452, 476, 503
FatI	CATG	5 cut(s)	10, 230, 324, 450, 474
FauI	CCCGC	3 cut(s)	15, 182, 259
FbaI	TGATCA	1 cut(s)	222
Fnu4HI	GCNGC	2 cut(s)	141, 158
FriOI	GRGCYC	2 cut(s)	238, 339
Fsp4HI	GCNGC	2 cut(s)	141, 158
FspBI	CTAG	1 cut(s)	27
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	2 cut(s)	141, 158
HapII	CCGG	1 cut(s)	357
HhaI	GCGC	1 cut(s)	256
Hin1II	CATG	5 cut(s)	14, 234, 328, 454, 478
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HindIII	AAGCTT	1 cut(s)	274
HinfI	GANTC	5 cut(s)	41, 121, 129, 311, 468
HpaII	CCGG	1 cut(s)	357
HphI	GGTGA	3 cut(s)	317, 446, 463
Hpy166II	GTNNAC	2 cut(s)	70, 526
Hpy188I	TCNGA	4 cut(s)	118, 128, 172, 341
Hpy188III	TCNNGA	2 cut(s)	56, 269
Hpy8I	GTNNAC	2 cut(s)	70, 526
HpyAV	CCTTC	3 cut(s)	16, 339, 452
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4IV	ACGT	2 cut(s)	198, 376
HpyCH4V	TGCA	3 cut(s)	140, 180, 230
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 368
HpyF3I	CTNAG	1 cut(s)	285
HpySE526I	ACGT	2 cut(s)	198, 376
Hsp92II	CATG	5 cut(s)	14, 234, 328, 454, 478
HspAI	GCGC	1 cut(s)	254
Ksp22I	TGATCA	1 cut(s)	222
Kzo9I	GATC	3 cut(s)	58, 222, 265
LmnI	GCTCC	1 cut(s)	359
LpnPI	CCDG	7 cut(s)	69, 90, 150, 297, 348, 353, 370
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	2 cut(s)	117, 169
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	2 cut(s)	198, 376
MalI	GATC	3 cut(s)	60, 224, 267
MbiI	CCGCTC	1 cut(s)	32
MboI	GATC	3 cut(s)	58, 222, 265
MboII	GAAGA	1 cut(s)	31
MflI	RGATCY	1 cut(s)	265
MhlI	GDGCHC	3 cut(s)	238, 339, 492
MluCI	AATT	3 cut(s)	35, 405, 530
MlyI	GAGTC	3 cut(s)	115, 123, 320
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	2 cut(s)	256, 282
Mph1103I	ATGCAT	1 cut(s)	232
MseI	TTAA	3 cut(s)	279, 404, 541
MslI	CAYNNNNRTG	2 cut(s)	9, 215
MspI	CCGG	1 cut(s)	357
MspR9I	CCNGG	1 cut(s)	357
MvnI	CGCG	3 cut(s)	63, 207, 254
MwoI	GCNNNNNNNGC	2 cut(s)	186, 368
NciI	CCSGG	1 cut(s)	357
NdeII	GATC	3 cut(s)	58, 222, 265
NlaIII	CATG	5 cut(s)	14, 234, 328, 454, 478
NlaIV	GGNNCC	2 cut(s)	267, 489
NsiI	ATGCAT	1 cut(s)	232
NspI	RCATGY	1 cut(s)	14
OliI	CACNNNNGTG	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PfeI	GAWTC	2 cut(s)	41, 468
PkrI	GCNGC	2 cut(s)	142, 159
PleI	GAGTC	3 cut(s)	115, 123, 319
PpsI	GAGTC	3 cut(s)	115, 123, 319
PspN4I	GGNNCC	2 cut(s)	267, 489
PspPI	GGNCC	1 cut(s)	53
PstI	CTGCAG	1 cut(s)	142
PsuI	RGATCY	1 cut(s)	265
RseI	CAYNNNNRTG	2 cut(s)	9, 215
SaqAI	TTAA	3 cut(s)	279, 404, 541
SatI	GCNGC	2 cut(s)	141, 158
Sau3AI	GATC	3 cut(s)	58, 222, 265
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	3 cut(s)	115, 123, 320
ScrFI	CCNGG	1 cut(s)	357
SduI	GDGCHC	3 cut(s)	238, 339, 492
SetI	ASST	8 cut(s)	102, 201, 278, 293, 324, 364, 379, 502
SfaNI	GCATC	2 cut(s)	117, 169
SfcI	CTRYAG	1 cut(s)	138
SinI	GGWCC	1 cut(s)	53
SmiMI	CAYNNNNRTG	2 cut(s)	9, 215
Sse9I	AATT	3 cut(s)	35, 405, 530
SsiI	CCGC	6 cut(s)	8, 32, 158, 189, 252, 485
SspMI	CTAG	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	355
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	1 cut(s)	302
TaiI	ACGT	2 cut(s)	201, 379
TaqII	GACCGA	1 cut(s)	41
TasI	AATT	3 cut(s)	35, 405, 530
TauI	GCSGC	1 cut(s)	160
TfiI	GAWTC	2 cut(s)	41, 468
Tru1I	TTAA	3 cut(s)	279, 404, 541
Tru9I	TTAA	3 cut(s)	279, 404, 541
TseI	GCWGC	1 cut(s)	140
TspDTI	ATGAA	2 cut(s)	156, 467
VpaK11BI	GGWCC	1 cut(s)	53
XapI	RAATTY	1 cut(s)	530
XceI	RCATGY	1 cut(s)	14
XspI	CTAG	1 cut(s)	27
Zsp2I	ATGCAT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.